##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139326_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9849412 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.226392803956216 32.0 28.0 33.0 18.0 33.0 2 31.22471229754629 33.0 31.0 33.0 27.0 34.0 3 31.613539265085063 33.0 31.0 33.0 29.0 34.0 4 32.110030629239596 33.0 33.0 34.0 29.0 34.0 5 32.374089945673916 33.0 33.0 34.0 31.0 34.0 6 35.750410278298844 38.0 36.0 38.0 31.0 38.0 7 36.099405121848896 38.0 37.0 38.0 33.0 38.0 8 36.28786713359133 38.0 37.0 38.0 33.0 38.0 9 36.70387501304646 38.0 38.0 38.0 34.0 38.0 10-11 36.783962941138014 38.0 38.0 38.0 34.5 38.0 12-13 36.855167343999824 38.0 38.0 38.0 35.0 38.0 14-15 36.85406844591332 38.0 38.0 38.0 35.0 38.0 16-17 36.86897857455857 38.0 38.0 38.0 35.0 38.0 18-19 36.893422977940205 38.0 38.0 38.0 35.0 38.0 20-21 36.910528473857894 38.0 38.0 38.0 35.0 38.0 22-23 36.93412611340967 38.0 38.0 38.0 35.0 38.0 24-25 36.9274071788179 38.0 38.0 38.0 35.0 38.0 26-27 36.907453660170106 38.0 38.0 38.0 35.0 38.0 28-29 36.89071243978091 38.0 38.0 38.0 35.0 38.0 30-31 36.88567861058547 38.0 38.0 38.0 35.0 38.0 32-33 36.861725404564424 38.0 38.0 38.0 35.0 38.0 34-35 36.839639635982124 38.0 38.0 38.0 35.0 38.0 36-37 36.81379676008902 38.0 38.0 38.0 35.0 38.0 38-39 36.797616195248075 38.0 38.0 38.0 35.0 38.0 40-41 36.78382072187407 38.0 38.0 38.0 35.0 38.0 42-43 36.73688184361168 38.0 38.0 38.0 35.0 38.0 44-45 36.69781885796465 38.0 38.0 38.0 34.5 38.0 46-47 36.647019878907386 38.0 38.0 38.0 34.0 38.0 48-49 36.61007833595494 38.0 38.0 38.0 34.0 38.0 50-51 36.578758579417794 38.0 38.0 38.0 34.0 38.0 52-53 36.5518139760095 38.0 38.0 38.0 34.0 38.0 54-55 36.53864878893162 38.0 38.0 38.0 34.0 38.0 56-57 36.52095721155388 38.0 38.0 38.0 34.0 38.0 58-59 36.511115178491096 38.0 38.0 38.0 34.0 38.0 60-61 36.508315408006325 38.0 38.0 38.0 34.0 38.0 62-63 36.49545563690894 38.0 38.0 38.0 34.0 38.0 64-65 36.48490590955053 38.0 38.0 38.0 34.0 38.0 66-67 36.4604905635933 38.0 38.0 38.0 34.0 38.0 68-69 36.44888499297262 38.0 38.0 38.0 34.0 38.0 70-71 36.452937843657466 38.0 38.0 38.0 34.0 38.0 72-73 36.434519046314804 38.0 38.0 38.0 34.0 38.0 74-75 36.42418961737131 38.0 38.0 38.0 34.0 38.0 76-77 36.4115193712216 38.0 38.0 38.0 34.0 38.0 78-79 36.39932104855396 38.0 38.0 38.0 34.0 38.0 80-81 36.395222861284275 38.0 38.0 38.0 34.0 38.0 82-83 36.373143001726284 38.0 38.0 38.0 34.0 38.0 84-85 36.361581808712785 38.0 38.0 38.0 34.0 38.0 86-87 36.34713635496459 38.0 38.0 38.0 33.5 38.0 88-89 36.3466370354618 38.0 38.0 38.0 34.0 38.0 90-91 36.35223488108238 38.0 38.0 38.0 34.0 38.0 92-93 36.32058770558679 38.0 37.0 38.0 33.0 38.0 94-95 36.30951014482858 38.0 37.0 38.0 33.0 38.0 96-97 36.30518954264093 38.0 37.0 38.0 33.0 38.0 98-99 36.33713965750446 38.0 37.0 38.0 34.0 38.0 100-101 35.80841839574647 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 10.0 19 14.0 20 61.0 21 399.0 22 1782.0 23 5418.0 24 12176.0 25 23251.0 26 39245.0 27 60678.0 28 87519.0 29 118979.0 30 153377.0 31 195558.0 32 249565.0 33 324911.0 34 448721.0 35 697778.0 36 1486370.0 37 5943597.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.99131115644264 19.92912876423486 16.074756543842415 24.004803535480086 2 14.419114562371846 21.418060286238408 41.43969203440774 22.72313311698201 3 17.880514517378515 26.017851141662852 30.94131216348892 25.160322177469713 4 12.635292340294018 18.362111362586926 37.7534212194596 31.24917507765946 5 13.69668452509509 37.067752245645394 35.10701952250156 14.128543706757954 6 30.083054704179297 37.8038607786942 18.389351567382906 13.7237329497436 7 26.6427579636226 32.7455080567246 22.488641961570906 18.12309201808189 8 24.692265893639135 36.67466646739927 20.539642366468172 18.093425272493423 9 25.526640575092195 17.084634087801383 20.889054087695794 36.499671249410625 10-11 24.47887752081038 26.798543913078266 28.290551760856385 20.432026805254974 12-13 25.429573866947592 24.24884856070596 28.524946463809208 21.79663110853724 14-15 22.444605559582307 25.54772575694643 26.478050611970726 25.529618071500533 16-17 21.803301557493988 28.706652742315985 27.050386358089195 22.43965934210083 18-19 21.816408938929552 27.53425280615736 29.235933068897918 21.413405186015165 20-21 22.74029820196115 26.63374429942805 29.160520247722893 21.465437250887913 22-23 22.38926018715707 26.578407993155594 29.065546808255284 21.96678501143205 24-25 22.114470889267864 26.760532487163974 29.181185323559657 21.94381130000851 26-27 22.07623410998041 26.885026262067363 29.124206911362215 21.91453271659001 28-29 21.967671245986768 26.938152789071157 29.12851631928547 21.9656596456566 30-31 22.396964215445532 26.751117727147477 29.02180444935224 21.830113608054752 32-33 22.01721035065402 26.98682895877277 29.004945760609296 21.991014929963914 34-35 22.189354095287754 26.950919342395665 29.054621801562824 21.805104760753764 36-37 22.134186279728578 26.88484532479022 29.030125382526194 21.950843012955012 38-39 21.976590395612035 26.95721083280032 29.110618485882046 21.955580285705597 40-41 22.320605899817103 26.796126418134747 28.94932787715488 21.933939804893274 42-43 22.180647917932774 26.869830633636266 28.825641269194097 22.123880179236867 44-45 22.206648253385765 27.051245410362206 28.635207598770013 22.106898737482013 46-47 22.340598381464225 26.963340863583664 28.31847975795654 22.377580996995572 48-49 22.213429882971155 27.120007362512787 28.313649428421105 22.35291332609495 50-51 22.179205140047213 27.247779464885596 28.274578047429276 22.29843734763791 52-53 22.442894780664705 27.164949710046514 28.13946585744867 22.25268965184011 54-55 22.35384126233569 27.119688004799723 28.128823397425563 22.39764733543902 56-57 22.366991723074413 27.30233350232157 28.018839236662885 22.31183553794114 58-59 22.290236736160594 27.380292082342862 28.134575378347172 22.19489580314938 60-61 22.404416521720762 27.37998481623805 28.083954192749488 22.131644469291697 62-63 22.341131527319373 27.498114709444078 27.969088272258407 22.191665490978142 64-65 22.272013786806273 27.468864818330385 27.97215570054693 22.286965694316407 66-67 22.377445014133354 27.49265831633254 27.815476361595902 22.314420307938203 68-69 22.31925251703459 27.360377872259058 27.957093218882314 22.363276391824037 70-71 22.342466621948564 27.07536634699974 28.062589496538287 22.519577534513406 72-73 22.42377923975715 27.11853222655517 27.958525437061986 22.499163096625697 74-75 22.214975250428132 27.288977643277732 27.978270814272644 22.517776292021487 76-77 22.3986809822009 27.20823075810529 27.881629221608495 22.511459038085317 78-79 22.35753906986692 27.285684583179805 27.80367173426896 22.55310461268432 80-81 22.400846269760642 27.291435412737368 27.760432374705484 22.547285942796503 82-83 22.4270293405906 27.291970766123214 27.829621338439075 22.451378554847107 84-85 22.544601115018683 27.215184831981286 27.77884596767098 22.46136808532905 86-87 22.330821527069077 27.322303904901347 27.849694198941684 22.497180369087893 88-89 22.41644931386826 27.33020037436998 27.768991444532055 22.48435886722971 90-91 22.468263506187977 27.32796837975154 27.79329641506139 22.410471698999093 92-93 22.538959338035394 27.303894233787478 27.712668506928743 22.444477921248378 94-95 22.41081386455638 27.398336165231463 27.714484198806133 22.476365771406027 96-97 22.442161784576065 27.391286940371018 27.752825629763162 22.41372564528976 98-99 22.672049428288474 27.99202677763759 27.758951070071475 21.576972724002463 100-101 23.296208482757883 30.517406795630613 25.08236727841603 21.104017443195477 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3051.0 1 2888.0 2 3285.0 3 4084.5 4 5029.5 5 6940.0 6 8993.5 7 12598.5 8 16507.5 9 17963.0 10 16954.5 11 15589.5 12 16593.0 13 20262.5 14 28645.5 15 39069.5 16 46252.5 17 49341.0 18 48348.5 19 44078.5 20 38936.0 21 34539.0 22 32681.0 23 35285.5 24 42152.0 25 53587.0 26 69401.0 27 87407.0 28 106268.5 29 126093.0 30 144589.5 31 164856.0 32 188407.0 33 212710.5 34 237117.5 35 257320.0 36 280127.0 37 301759.0 38 316085.0 39 328250.0 40 343767.5 41 358853.0 42 368084.0 43 378873.0 44 394359.0 45 403391.0 46 402931.0 47 402036.0 48 400252.0 49 396339.0 50 390875.5 51 383317.0 52 370662.5 53 355934.0 54 340726.0 55 320472.5 56 295640.5 57 268713.0 58 241820.0 59 211801.0 60 177949.5 61 144436.0 62 113057.0 63 86436.0 64 64646.5 65 47775.0 66 35332.0 67 26808.5 68 20348.5 69 14659.0 70 10572.0 71 7720.5 72 5412.5 73 3624.5 74 2423.0 75 1523.5 76 903.0 77 531.0 78 331.5 79 205.0 80 125.0 81 75.0 82 49.5 83 37.5 84 28.5 85 21.5 86 15.5 87 11.5 88 6.5 89 4.0 90 3.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0018478260428135202 4 0.0 5 0.05781055762516585 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 3.0458671035387696E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 2.5722458988883063E-5 40-41 0.0 42-43 0.0 44-45 5.2372944807086355E-6 46-47 2.586559340290122E-4 48-49 0.0 50-51 6.429341112550331E-5 52-53 4.314140155196878E-5 54-55 0.0017530806049636932 56-57 0.002218877752843033 58-59 8.091803547964111E-4 60-61 0.0025839786117547183 62-63 0.004484729440405737 64-65 0.002019423024403799 66-67 0.0068435100731705605 68-69 0.003968224017338509 70-71 0.0017133889171312814 72-73 6.982631925047032E-4 74-75 6.392621062020799E-4 76-77 0.0 78-79 0.0 80-81 1.8657767433216026E-4 82-83 0.0 84-85 8.884483274470057E-4 86-87 9.458440016397103E-4 88-89 1.310511626235095E-4 90-91 3.5292582123160147E-4 92-93 1.9101267534645243E-4 94-95 1.9298889361783156E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 91.0 20-21 485.0 22-23 919.0 24-25 1238.0 26-27 2550.0 28-29 5811.0 30-31 15282.0 32-33 20144.0 34-35 27091.0 36-37 43336.0 38-39 53194.0 40-41 52879.0 42-43 61566.0 44-45 73644.0 46-47 74359.0 48-49 68872.0 50-51 61702.0 52-53 58647.0 54-55 62448.0 56-57 65507.0 58-59 65812.0 60-61 65335.0 62-63 63320.0 64-65 68954.0 66-67 73634.0 68-69 74108.0 70-71 78829.0 72-73 67458.0 74-75 68532.0 76-77 71948.0 78-79 74882.0 80-81 76117.0 82-83 72686.0 84-85 71652.0 86-87 74861.0 88-89 77931.0 90-91 81047.0 92-93 79675.0 94-95 85817.0 96-97 142752.0 98-99 837793.0 100-101 6726504.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.23353162006464 #Duplication Level Percentage of deduplicated Percentage of total 1 88.31233229645412 72.62234970342115 2 7.824634611882457 12.868946755433763 3 2.0515097269079123 5.061086699896559 4 0.7891677879685958 2.59584216981808 5 0.368538468395351 1.5153109896999644 6 0.20748047305909337 1.0237111225110551 7 0.13261378766504003 0.7633710070846725 8 0.07780279517289647 0.5118398893583835 9 0.05712922111139994 0.4228143849624574 >10 0.174319545423159 2.182088331040379 >50 0.003619949159198689 0.19725707722829836 >100 7.39518141169692E-4 0.11001432561313529 >500 2.2364219784360468E-5 0.010298897138853578 >1k 8.945443980609965E-5 0.11506864679308362 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0152890345129232E-5 2 0.0 5.076445172564616E-5 0.0 0.0 1.0152890345129232E-5 3 0.0 5.076445172564616E-5 0.0 0.0 1.0152890345129232E-5 4 0.0 1.0152890345129231E-4 0.0 0.0 1.0152890345129232E-5 5 0.0 1.2183468414155078E-4 0.0 0.0 1.0152890345129232E-5 6 9.137601310616309E-5 1.2183468414155078E-4 0.0 0.0 1.0152890345129232E-5 7 9.137601310616309E-5 1.2183468414155078E-4 0.0 0.0 2.0305780690258465E-5 8 9.137601310616309E-5 1.2183468414155078E-4 0.0 0.0 3.0458671035387696E-5 9 9.137601310616309E-5 1.8275202621232617E-4 0.0 2.0305780690258465E-5 3.0458671035387696E-5 10-11 9.137601310616309E-5 1.8275202621232617E-4 0.0 4.5688006553081544E-5 3.0458671035387696E-5 12-13 9.137601310616309E-5 1.8275202621232617E-4 0.0 5.584089689821078E-5 3.0458671035387696E-5 14-15 9.137601310616309E-5 2.538222586282308E-4 0.0 6.599378724334E-5 3.0458671035387696E-5 16-17 2.2844003276540774E-4 2.9443382000874773E-4 0.0 7.107023241590462E-5 3.0458671035387696E-5 18-19 2.3351647793797234E-4 3.2489249104413544E-4 0.0 8.122312276103385E-5 5.076445172564616E-5 20-21 2.3351647793797234E-4 3.5535116207952315E-4 0.0 1.2183468414155078E-4 5.076445172564616E-5 22-23 2.3351647793797234E-4 3.756569427697816E-4 0.0 1.3198757448668E-4 6.091734207077539E-5 24-25 2.3351647793797234E-4 3.858098331149108E-4 0.0 1.7767558103976157E-4 7.107023241590462E-5 26-27 2.3351647793797234E-4 3.9596272346004006E-4 0.0 2.233635875928431E-4 7.107023241590462E-5 28-29 2.3351647793797234E-4 3.9596272346004006E-4 0.0 4.924151817387678E-4 7.107023241590462E-5 30-31 2.3351647793797234E-4 4.568800655308154E-4 0.0 0.001309722854521671 7.107023241590462E-5 32-33 2.3859292311053694E-4 4.670329558759447E-4 0.0 0.0032590778007864835 7.614667758846925E-5 34-35 2.538222586282308E-4 5.736383044998017E-4 0.0 0.005680542148099805 8.122312276103386E-5 36-37 2.538222586282308E-4 6.599378724334001E-4 0.0 0.009366041343381717 8.122312276103386E-5 38-39 2.538222586282308E-4 6.954729886413524E-4 0.0 0.014960283923547923 8.122312276103386E-5 40-41 2.538222586282308E-4 7.513138855395632E-4 0.0 0.02122461726649266 8.122312276103386E-5 42-43 2.842809296636185E-4 8.122312276103386E-4 0.0 0.0276463204097869 8.122312276103386E-5 44-45 2.893573748361831E-4 9.239130214067601E-4 0.0 0.03436753381826245 8.122312276103386E-5 46-47 2.9443382000874773E-4 9.949832538226648E-4 0.0 0.041951742906073994 8.629956793359847E-5 48-49 2.9443382000874773E-4 0.001005136144167794 0.0 0.049749162691133234 1.1168179379642156E-4 50-51 3.096631555264416E-4 0.0011625059445172971 0.0 0.05764811137964378 1.1168179379642156E-4 52-53 3.147396006990062E-4 0.0011828117252075557 0.0 0.06498357465399965 1.2183468414155078E-4 54-55 3.2489249104413544E-4 0.0012031175058978142 0.0 0.07209567434076267 1.3198757448668E-4 56-57 3.2489249104413544E-4 0.001228499731760637 0.0 0.07815187343163227 1.370640196592446E-4 58-59 3.2489249104413544E-4 0.0012386526221057662 0.0 0.08338061195937382 1.4721691000437387E-4 60-61 3.502747169069585E-4 0.0012589584027960247 0.0 0.08881240829401796 1.6244624552206772E-4 62-63 3.6550405242465235E-4 0.001309722854521671 0.0 0.0938583947955472 1.8275202621232617E-4 64-65 3.6550405242465235E-4 0.0014518633193534801 0.0 0.09861502392224022 1.8275202621232617E-4 66-67 3.858098331149108E-4 0.0014518633193534801 0.0 0.10343764683617662 1.8782847138489077E-4 68-69 3.858098331149108E-4 0.0014975513259065617 0.0 0.10844302177632534 1.929049165574554E-4 70-71 4.1119205897773394E-4 0.0015381628872870785 0.0 0.11354992561992533 2.1321069724771388E-4 72-73 4.6195651070338005E-4 0.0015432393324596432 0.0 0.11750955285452573 2.4366936828310157E-4 74-75 4.721094010485093E-4 0.0015432393324596432 0.0 0.12077878354565734 2.4366936828310157E-4 76-77 4.8733873656620313E-4 0.001588927339012725 0.0 0.12345914659677146 2.4366936828310157E-4 78-79 4.974916269113324E-4 0.0016193860100481125 0.0 0.12602782785408917 2.4366936828310157E-4 80-81 4.974916269113324E-4 0.0016295389003932416 0.0 0.12702281110791183 2.7920448449105385E-4 82-83 4.974916269113324E-4 0.0016447682359109355 0.0 0.12743400316688958 3.451982717343939E-4 84-85 4.974916269113324E-4 0.0016599975714286295 0.0 0.1277741249934514 3.604276072520878E-4 86-87 5.02568072083897E-4 0.0016752269069463233 0.0 0.12790611256793807 3.70580497597217E-4 88-89 5.076445172564616E-4 0.0017462971393622279 0.0 0.1279873356906991 3.858098331149108E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14190 0.0 53.657627 1 GTATCAA 26585 0.0 39.827374 1 TCAACGC 34185 0.0 31.304314 4 ATCAACG 34580 0.0 30.959656 3 TATCAAC 35055 0.0 30.701868 2 CAACGCA 35085 0.0 30.488867 5 AACGCAG 36440 0.0 29.420544 6 ACGCAGA 41540 0.0 25.777014 7 CGCAGAG 42380 0.0 25.235249 8 TGGTATC 6300 0.0 23.327003 2 GTGGTAT 6685 0.0 23.15776 1 GCAGAGT 48245 0.0 22.140375 9 TACATGG 32490 0.0 20.95187 2 GTACATG 32930 0.0 20.698404 1 GAGTACT 28725 0.0 20.572811 12-13 ACATGGG 33000 0.0 20.191986 3 AGAGTAC 43750 0.0 19.763212 10-11 CAGAGTA 46950 0.0 19.483671 10-11 GTACTTT 31400 0.0 18.723368 14-15 AGTACTT 31065 0.0 18.19544 12-13 >>END_MODULE