##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139325_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10963539 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.77798117925243 32.0 30.0 33.0 18.0 34.0 2 31.454014073375394 33.0 31.0 33.0 27.0 34.0 3 31.778890283511554 33.0 31.0 33.0 29.0 34.0 4 32.17920363123623 33.0 33.0 34.0 30.0 34.0 5 32.4321366485767 33.0 33.0 34.0 31.0 34.0 6 35.881307121724106 38.0 36.0 38.0 31.0 38.0 7 36.21400534991484 38.0 37.0 38.0 33.0 38.0 8 36.41313293089029 38.0 37.0 38.0 34.0 38.0 9 36.76269533040381 38.0 38.0 38.0 34.0 38.0 10-11 36.821528842101074 38.0 38.0 38.0 35.0 38.0 12-13 36.88027556612879 38.0 38.0 38.0 35.0 38.0 14-15 36.87551560677625 38.0 38.0 38.0 35.0 38.0 16-17 36.89341475412273 38.0 38.0 38.0 35.0 38.0 18-19 36.92069002536498 38.0 38.0 38.0 35.0 38.0 20-21 36.93876302962843 38.0 38.0 38.0 35.0 38.0 22-23 36.95900996181048 38.0 38.0 38.0 35.0 38.0 24-25 36.951049604883096 38.0 38.0 38.0 35.0 38.0 26-27 36.92606644994109 38.0 38.0 38.0 35.0 38.0 28-29 36.898421227299394 38.0 38.0 38.0 35.0 38.0 30-31 36.891671940111195 38.0 38.0 38.0 35.0 38.0 32-33 36.857175354876475 38.0 38.0 38.0 35.0 38.0 34-35 36.8216953520904 38.0 38.0 38.0 35.0 38.0 36-37 36.79186710149345 38.0 38.0 38.0 35.0 38.0 38-39 36.734362754834 38.0 38.0 38.0 35.0 38.0 40-41 36.77651444280184 38.0 38.0 38.0 35.0 38.0 42-43 36.73862363547467 38.0 38.0 38.0 35.0 38.0 44-45 36.69356003390571 38.0 38.0 38.0 34.5 38.0 46-47 36.64161606392379 38.0 38.0 38.0 34.0 38.0 48-49 36.604684756492205 38.0 38.0 38.0 34.0 38.0 50-51 36.57493148525944 38.0 38.0 38.0 34.0 38.0 52-53 36.559499801540156 38.0 38.0 38.0 34.0 38.0 54-55 36.547454183821465 38.0 38.0 38.0 34.0 38.0 56-57 36.53488507507112 38.0 38.0 38.0 34.0 38.0 58-59 36.518708771177614 38.0 38.0 38.0 34.0 38.0 60-61 36.51840615534694 38.0 38.0 38.0 34.0 38.0 62-63 36.501108229889326 38.0 38.0 38.0 34.0 38.0 64-65 36.494184112630805 38.0 38.0 38.0 34.0 38.0 66-67 36.465432608777704 38.0 38.0 38.0 34.0 38.0 68-69 36.45012187045768 38.0 38.0 38.0 34.0 38.0 70-71 36.4562682548005 38.0 38.0 38.0 34.0 38.0 72-73 36.43885495610831 38.0 38.0 38.0 34.0 38.0 74-75 36.43565281189919 38.0 38.0 38.0 34.0 38.0 76-77 36.43374256353633 38.0 38.0 38.0 34.0 38.0 78-79 36.429000014923076 38.0 38.0 38.0 34.0 38.0 80-81 36.434331178736784 38.0 38.0 38.0 34.0 38.0 82-83 36.41927529591295 38.0 38.0 38.0 34.0 38.0 84-85 36.416264926307406 38.0 38.0 38.0 34.0 38.0 86-87 36.40478738494134 38.0 38.0 38.0 34.0 38.0 88-89 36.41294847953763 38.0 38.0 38.0 34.0 38.0 90-91 36.42266709822478 38.0 38.0 38.0 34.0 38.0 92-93 36.39793651974804 38.0 38.0 38.0 34.0 38.0 94-95 36.39092244393693 38.0 38.0 38.0 34.0 38.0 96-97 36.38905850077476 38.0 38.0 38.0 34.0 38.0 98-99 36.41949278695609 38.0 38.0 38.0 34.0 38.0 100-101 35.881281657683886 38.0 36.5 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 12.0 18 22.0 19 30.0 20 111.0 21 489.0 22 2030.0 23 6289.0 24 14311.0 25 27541.0 26 46192.0 27 70422.0 28 100780.0 29 134396.0 30 172183.0 31 215836.0 32 269891.0 33 351882.0 34 485202.0 35 754657.0 36 1616591.0 37 6694672.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.52005825856049 20.845103027407482 16.131415230063944 23.503423483968085 2 13.898878820059837 21.6716062213123 42.625241721673994 21.80427323695387 3 17.04954565861395 27.48089952862913 32.06891657671538 23.40063823604153 4 11.999063441102367 19.350485276697608 38.40313789187962 30.247313390320407 5 12.5858376482223 38.0245015479571 35.74300571815955 13.646655085661049 6 28.25897732474888 38.91630248225504 18.84928762509989 13.975432567896187 7 25.049028420476272 33.90752748724659 22.946139927992228 18.097304164284907 8 24.065477397398777 36.72902518064651 21.30804660794293 17.89745081401179 9 25.20156128418023 16.946772388003545 21.249881083106466 36.60178524470976 10-11 23.764912953746048 27.220042725255052 28.686854673477242 20.328189647521665 12-13 25.105539602930204 24.780056183503163 28.87303674812653 21.241367465440103 14-15 22.076325936509157 26.009957190810916 27.01664901116738 24.897067861512536 16-17 21.014441595911684 29.480056576621838 27.444573326186006 22.060928501280472 18-19 21.10248342255179 27.74947031246024 30.12412324159197 21.023923023396005 20-21 22.09701582212908 26.583401331197916 30.09835944715934 21.221223399513665 22-23 21.761027736872357 26.95395431459061 29.93177666464728 21.353241283889744 24-25 21.61181238724273 27.240302851942843 30.067842918610594 21.08004184220383 26-27 21.462188235574626 27.279289301738036 30.130223700328866 21.128298762358476 28-29 20.79568034659917 27.116774253594546 30.32234845291869 21.765196946887595 30-31 21.674191311490535 26.763563304885363 30.54794874923622 21.014296634387883 32-33 21.094822425751207 27.350891541983202 30.13579577264906 21.418490259616533 34-35 21.109622734554883 27.512285096340783 30.580130048571817 20.797962120532514 36-37 21.582620120811885 27.212446685591 29.99625131072161 21.2086818828755 38-39 21.225408307414607 27.045600042243684 30.19747056609709 21.531521084244616 40-41 21.40776812320859 26.939847560820677 30.208404500413216 21.443979815557515 42-43 21.704808053802623 26.927019508548106 29.907298352870292 21.46087408477898 44-45 21.395330617999896 27.39561627602524 29.639422188321706 21.569630917653154 46-47 21.841869305092338 27.109630692918575 28.93878829024765 22.109711711741433 48-49 21.720042498143552 27.24656733687197 28.905439275694732 22.127950889289746 50-51 21.451927566581844 27.503994828889095 28.993117757707658 22.050959846821403 52-53 21.743809954961787 27.579814196307524 28.928808361647768 21.747567487082918 54-55 21.63462888739469 27.744267983085173 28.495838421034602 22.125264708485535 56-57 22.017510132689242 28.0582153363008 27.955125337818014 21.969149193191946 58-59 21.47515228856647 28.54788845906532 28.515649972839864 21.46130927952835 60-61 21.907755906873767 28.95488794351308 27.789398157197926 21.34795799241523 62-63 21.508390829092924 29.290792156935417 27.648672620787423 21.552144393184236 64-65 21.417361914775398 29.173067240402066 27.753396624029275 21.65617422079326 66-67 21.63462493855908 29.011396681428288 27.67210175903462 21.681876620978013 68-69 21.629806853190704 28.629620087849045 27.92459047699846 21.815982581961787 70-71 21.668883022577013 28.048956293402327 28.165382181584814 22.11677850243585 72-73 21.870155620796105 27.910198340252368 28.199381211811424 22.020264827140103 74-75 21.761499997672587 28.008517646380298 28.114653305884254 22.115329050062858 76-77 21.8410665323956 27.95935423894508 28.03567347827257 22.163905750386746 78-79 21.865100633484026 27.945327631008105 28.068691561915248 22.12088017359262 80-81 21.873039140790322 27.975089138905428 28.03063764161492 22.121234078689326 82-83 21.952359996253033 27.935236869797098 28.11018657339186 22.002216560558015 84-85 22.084308540715394 27.96786251155624 27.93811403945713 22.009714908271235 86-87 21.81260769511886 28.10837736029014 27.975232008315366 22.103782936275636 88-89 21.972854784289776 27.974285476089232 27.977056225399593 22.075803514221395 90-91 22.106639556313905 27.938847536010332 27.9658647546226 21.988648153053166 92-93 22.081145925638463 27.99301209357828 27.889015157739856 22.036826823043405 94-95 21.893978453165 28.136674644841015 27.92042491624198 22.04892198575201 96-97 21.884493523678945 28.138830171792335 27.938850597892213 22.037825706636507 98-99 22.11095192896684 28.723844609765887 27.935990226000275 21.229213235267 100-101 22.756403477863167 31.149593777242035 25.354151587992263 20.739851156902535 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 7909.0 1 7398.0 2 6229.5 3 5957.5 4 8208.5 5 12678.5 6 15965.0 7 16899.5 8 16085.0 9 14427.0 10 13281.5 11 13667.5 12 16831.5 13 26819.5 14 45895.0 15 68191.0 16 86341.5 17 95332.0 18 95321.0 19 86243.5 20 74145.5 21 63760.5 22 57164.0 23 58151.0 24 65970.5 25 80743.0 26 101721.0 27 124493.0 28 148596.5 29 175450.0 30 198802.5 31 222972.0 32 251490.5 33 280533.0 34 307038.5 35 331160.5 36 358310.0 37 382161.0 38 395214.0 39 401984.0 40 412427.5 41 422760.5 42 428979.5 43 444214.5 44 491227.5 45 519035.5 46 500297.0 47 482874.5 48 464872.5 49 445590.5 50 430225.5 51 409465.5 52 386685.5 53 366399.0 54 342695.0 55 315107.5 56 289007.0 57 257589.5 58 224439.5 59 196486.5 60 167654.5 61 136735.5 62 104713.0 63 78972.0 64 62171.5 65 47429.0 66 33442.5 67 23979.5 68 17661.5 69 12501.5 70 8700.0 71 6270.0 72 4610.0 73 3316.5 74 2171.0 75 1372.0 76 899.0 77 513.0 78 305.5 79 202.5 80 148.5 81 106.0 82 73.0 83 49.0 84 33.0 85 25.5 86 21.0 87 17.5 88 13.5 89 9.0 90 6.5 91 3.5 92 2.5 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0017968650451282199 4 0.0 5 0.05944248476700817 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 4.5605711805284775E-6 14-15 4.560571180528477E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.827053241290654E-5 28-29 1.8285172626657735E-5 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 3.731772855196205E-5 40-41 0.0 42-43 0.0 44-45 1.438358430290678E-5 46-47 3.104903331260487E-4 48-49 0.0 50-51 6.938688705792313E-5 52-53 2.508365272766412E-5 54-55 0.001968496167100124 56-57 0.0024409677732506393 58-59 7.733464795360664E-4 60-61 0.0027872156720917343 62-63 0.004385166723459752 64-65 0.0021756645378489562 66-67 0.0070382496287821434 68-69 0.004116202020793153 70-71 0.0015851316864775797 72-73 7.922601687997382E-4 74-75 6.073940518865517E-4 76-77 0.0 78-79 0.0 80-81 1.8202964581787184E-4 82-83 0.0 84-85 9.980188124141275E-4 86-87 0.001082718079798269 88-89 1.416158753120244E-4 90-91 4.802206470430632E-4 92-93 2.5913840525340544E-4 94-95 4.483317798637161E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1736.0 20-21 5441.0 22-23 3764.0 24-25 4565.0 26-27 7285.0 28-29 13596.0 30-31 28610.0 32-33 35985.0 34-35 47301.0 36-37 73187.0 38-39 93431.0 40-41 89373.0 42-43 101326.0 44-45 120904.0 46-47 118156.0 48-49 106473.0 50-51 124705.0 52-53 85354.0 54-55 88098.0 56-57 92169.0 58-59 97460.0 60-61 101158.0 62-63 98207.0 64-65 114011.0 66-67 124121.0 68-69 119530.0 70-71 146014.0 72-73 91056.0 74-75 92303.0 76-77 96195.0 78-79 100178.0 80-81 104651.0 82-83 97403.0 84-85 95751.0 86-87 98230.0 88-89 102454.0 90-91 106794.0 92-93 103477.0 94-95 106228.0 96-97 157586.0 98-99 836417.0 100-101 6732856.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.84536596547261 #Duplication Level Percentage of deduplicated Percentage of total 1 86.77891985336794 67.55336774073845 2 8.1034909314207 12.616384343086656 3 2.4572694869392246 5.738611274597192 4 1.0447150035075898 3.253048871106733 5 0.5387626425883305 2.0970087540406857 6 0.3256970508341314 1.5212403669634855 7 0.20806289588800098 1.1337712591966225 8 0.12867936968245874 0.8013674100109873 9 0.08755084266895144 0.6133884649335034 >10 0.3156985254468537 3.760469615289655 >50 0.00804982287568871 0.4211584446248951 >100 0.002917948935137525 0.39053971203570964 >500 1.5910799458549536E-4 0.07481031339709926 >1k 2.6517850397045256E-5 0.024833429978370958 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.824228472211391E-5 0.0 0.0 9.121142361056955E-6 3 0.0 1.824228472211391E-5 0.0 0.0 9.121142361056955E-6 4 0.0 4.560571180528477E-5 0.0 0.0 2.7363427083170863E-5 5 0.0 6.384799652739869E-5 0.0 0.0 2.7363427083170863E-5 6 0.0 6.384799652739869E-5 0.0 0.0 4.560571180528477E-5 7 0.0 8.209028124951259E-5 0.0 9.121142361056955E-6 7.296913888845564E-5 8 0.0 8.209028124951259E-5 0.0 9.121142361056955E-6 8.209028124951259E-5 9 0.0 1.185748506937404E-4 0.0 9.121142361056955E-6 9.121142361056955E-5 10-11 0.0 1.6874113367955368E-4 0.0 9.121142361056955E-6 9.121142361056955E-5 12-13 0.0 1.778622760406106E-4 0.0 9.121142361056955E-6 1.003325659716265E-4 14-15 0.0 2.4627084374853777E-4 0.0 9.121142361056955E-6 1.4593827777691128E-4 16-17 0.0 2.8731598437329404E-4 0.0 9.121142361056955E-6 1.7330170486008214E-4 18-19 0.0 3.283611249980503E-4 0.0 1.3681713541585433E-5 2.052257031237815E-4 20-21 0.0 3.92209121525449E-4 0.0 1.824228472211391E-5 2.3258913020695232E-4 22-23 0.0 4.332542621502053E-4 0.0 1.824228472211391E-5 2.8731598437329404E-4 24-25 0.0 5.655108263855312E-4 0.0 5.016628298581325E-5 3.557245520812212E-4 26-27 0.0 6.11116538190816E-4 0.0 1.3681713541585433E-4 3.6940626562280665E-4 28-29 0.0 7.342519600650848E-4 0.0 4.8798111631654707E-4 3.8764855034492055E-4 30-31 0.0 9.303565208278093E-4 0.0 0.00158707877082391 4.10451406247563E-4 32-33 0.0 9.394776631888663E-4 0.0 0.0037807135086581076 4.332542621502053E-4 34-35 0.0 0.0011127793680489485 0.0 0.006507935074614137 4.606176892333762E-4 36-37 0.0 0.001158385079854233 0.0 0.01069453941833928 4.6517826041390464E-4 38-39 0.0 0.001185748506937404 0.0 0.017695016180450492 4.742994027749616E-4 40-41 0.0 0.001290641644089559 0.0 0.025192595201239308 4.7885997395549014E-4 42-43 0.0 0.0013499290694364292 0.0 0.03179174169946401 5.016628298581325E-4 44-45 0.0 0.0014730644913106981 0.0 0.03913882187129539 5.472685416634173E-4 46-47 0.0 0.0015733970572823245 0.0 0.04696476201708226 5.700713975660596E-4 48-49 0.0 0.0016281239114486665 0.0 0.055014170150715025 6.01995395829759E-4 50-51 0.0 0.0017649410468645209 0.0 0.0634329845499706 6.065559670102874E-4 52-53 0.0 0.0018105467586698055 0.0 0.07123156126867428 6.749645347182146E-4 54-55 0.0 0.0018196679010308624 0.0 0.07856495972696408 7.388125312456133E-4 56-57 0.0 0.0018698341840166757 0.0 0.08563384505678322 7.889788142314265E-4 58-59 0.0 0.0020659387447794003 0.0 0.09245189897167329 8.482662395782967E-4 60-61 0.0 0.0021252261701262703 0.0 0.09909209061052275 8.665085243004107E-4 62-63 0.0 0.0021480290260289126 0.0 0.10530814912958306 8.801902378419961E-4 64-65 0.0 0.0022802855902642385 0.0 0.11145579908093545 8.89311380203053E-4 66-67 0.0 0.002330451873250052 0.0 0.11781779587777268 8.9843252256411E-4 68-69 0.0 0.0024262238680411497 0.0 0.12395632468676401 9.257959496472808E-4 70-71 0.0 0.0024444661527632636 0.0 0.12998083921624212 9.85083374994151E-4 72-73 0.0 0.002458147866304849 0.0 0.1347147121016307 0.0010534919427020782 74-75 0.0 0.0025174352916517194 0.0 0.13852278903737197 0.001071734227424192 76-77 0.0 0.002590404430540175 0.0 0.14176991571790826 0.0010762947986047205 78-79 0.0 0.002599525572901232 0.0 0.14471604470052962 0.0010762947986047205 80-81 0.0 0.002608646715262289 0.0 0.146056852627605 0.0011127793680489485 82-83 0.0 0.002677055282970216 0.0 0.14657219717100473 0.001158385079854233 84-85 0.0 0.0028731598437329404 0.0 0.14713314742620975 0.0011629456510347616 86-87 0.0 0.0030419009774124944 0.0 0.1474478268376662 0.001185748506937404 88-89 0.0 0.0031239912586620068 0.0 0.1475435988324573 0.001231354218742689 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23320 0.0 50.188614 1 CTTATAC 13520 0.0 47.941494 1 GTATCAA 42915 0.0 37.387165 1 TATACAC 19305 0.0 36.03244 3 TTATACA 19020 0.0 35.027355 2 TATCAAC 55495 0.0 29.373419 2 ATCAACG 55150 0.0 29.36687 3 TCAACGC 55165 0.0 29.320301 4 CAACGCA 55870 0.0 28.95032 5 AACGCAG 57615 0.0 28.100414 6 ACATCTC 24505 0.0 26.862211 8 ACACATC 24775 0.0 26.450924 6 TACACAT 26235 0.0 26.305937 5 GTGGTAT 10175 0.0 25.82741 1 ACGCAGA 64450 0.0 25.107311 7 CGCAGAG 64810 0.0 24.961372 8 CACATCT 26175 0.0 24.956024 7 TGGTATC 10785 0.0 23.82167 2 ATACACA 30690 0.0 23.718391 4 CATCTCC 28405 0.0 22.967255 9 >>END_MODULE