##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139320_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10030080 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.188575764101582 31.0 18.0 33.0 18.0 33.0 2 28.16713705174834 29.0 27.0 33.0 18.0 33.0 3 28.397100421930833 30.0 27.0 31.0 18.0 33.0 4 31.287925121235325 33.0 31.0 33.0 28.0 33.0 5 31.895408511198315 33.0 32.0 33.0 30.0 34.0 6 35.94051114248341 38.0 36.0 38.0 31.0 38.0 7 36.25873342984303 38.0 37.0 38.0 33.0 38.0 8 36.61053132178407 38.0 37.0 38.0 34.0 38.0 9 36.853258598136804 38.0 38.0 38.0 35.0 38.0 10-11 36.90035069510911 38.0 38.0 38.0 35.0 38.0 12-13 36.96281136341884 38.0 38.0 38.0 35.0 38.0 14-15 36.957088079058195 38.0 38.0 38.0 35.0 38.0 16-17 36.97287459322358 38.0 38.0 38.0 35.0 38.0 18-19 36.982314448139995 38.0 38.0 38.0 35.5 38.0 20-21 36.99413343531489 38.0 38.0 38.0 36.0 38.0 22-23 37.008878089852445 38.0 38.0 38.0 36.0 38.0 24-25 36.996010348198865 38.0 38.0 38.0 36.0 38.0 26-27 36.966830502013735 38.0 38.0 38.0 35.5 38.0 28-29 36.94327627677279 38.0 38.0 38.0 35.0 38.0 30-31 36.9445515137042 38.0 38.0 38.0 35.0 38.0 32-33 36.92098670331935 38.0 38.0 38.0 35.0 38.0 34-35 36.89626949166902 38.0 38.0 38.0 35.0 38.0 36-37 36.86593166256736 38.0 38.0 38.0 35.0 38.0 38-39 36.84395099777251 38.0 38.0 38.0 35.0 38.0 40-41 36.837060814676164 38.0 38.0 38.0 35.0 38.0 42-43 36.78010581923003 38.0 38.0 38.0 35.0 38.0 44-45 36.74060107446056 38.0 38.0 38.0 35.0 38.0 46-47 36.69600018879292 38.0 38.0 38.0 35.0 38.0 48-49 36.65846685948616 38.0 38.0 38.0 34.0 38.0 50-51 36.627941979460516 38.0 38.0 38.0 34.0 38.0 52-53 36.60347874517305 38.0 38.0 38.0 34.0 38.0 54-55 36.58760759244788 38.0 38.0 38.0 34.0 38.0 56-57 36.56674574935303 38.0 38.0 38.0 34.0 38.0 58-59 36.55253041639634 38.0 38.0 38.0 34.0 38.0 60-61 36.55080591669925 38.0 38.0 38.0 34.0 38.0 62-63 36.537064163966456 38.0 38.0 38.0 34.0 38.0 64-65 36.52932725077645 38.0 38.0 38.0 34.0 38.0 66-67 36.500171516806844 38.0 38.0 38.0 34.0 38.0 68-69 36.48465878523231 38.0 38.0 38.0 34.0 38.0 70-71 36.48939994631485 38.0 38.0 38.0 34.0 38.0 72-73 36.471719531787606 38.0 38.0 38.0 34.0 38.0 74-75 36.4629438913326 38.0 38.0 38.0 34.0 38.0 76-77 36.44908039471103 38.0 38.0 38.0 34.0 38.0 78-79 36.433930620347496 38.0 38.0 38.0 34.0 38.0 80-81 36.43347431438507 38.0 38.0 38.0 34.0 38.0 82-83 36.41028912562292 38.0 38.0 38.0 34.0 38.0 84-85 36.40122624192257 38.0 38.0 38.0 34.0 38.0 86-87 36.3853477464088 38.0 38.0 38.0 34.0 38.0 88-89 36.38362469710776 38.0 38.0 38.0 34.0 38.0 90-91 36.39073537046277 38.0 38.0 38.0 34.0 38.0 92-93 36.36331922769686 38.0 38.0 38.0 34.0 38.0 94-95 36.35461890261314 38.0 38.0 38.0 34.0 38.0 96-97 36.34892064188173 38.0 37.0 38.0 34.0 38.0 98-99 36.37143411639368 38.0 37.0 38.0 34.0 38.0 100-101 35.82848963278768 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 9.0 19 28.0 20 107.0 21 448.0 22 1894.0 23 5432.0 24 12286.0 25 23577.0 26 39460.0 27 60842.0 28 87168.0 29 117345.0 30 151278.0 31 193112.0 32 246318.0 33 324727.0 34 458044.0 35 744908.0 36 1802475.0 37 5760620.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.078364280245026 18.88712752041858 13.821205812914753 22.213302386421642 2 14.649733601327208 20.099839682235835 41.079472945380296 24.17095377105666 3 19.784523803707906 25.604032155227568 29.383923443048836 25.227520598015683 4 12.922548972690148 18.14590711140888 39.07231049004594 29.85923342585503 5 13.873652557650487 37.97332860391671 34.388092323771794 13.764926514661008 6 30.014586124936194 37.63645952973456 18.62760815467075 13.721346190658497 7 26.706277517228177 33.10912774374681 22.3922540996682 17.792340639356816 8 24.23192038348647 36.930931757274124 20.720143807427256 18.11700405181215 9 25.344613402884125 17.810147077590607 21.267218207631444 35.57802131189383 10-11 24.275838278458398 27.03277541156202 28.281250000000004 20.41013630997958 12-13 25.189974815254455 24.42222915581078 28.64663734719152 21.74115868174325 14-15 22.362173526900495 25.784126660655417 26.528458009690052 25.32524180275404 16-17 21.696491952207758 29.04595476805768 27.170072422154163 22.0874808575804 18-19 21.64607361057938 27.94693063265697 29.179722395035736 21.22727336172792 20-21 22.50368934147093 27.017629725660953 29.220426930201192 21.258254002666924 22-23 22.160875185449058 26.960557797664592 29.150470694998187 21.728096321888167 24-25 21.92512579788328 27.091313620324105 29.26793297593481 21.71562760585781 26-27 21.834630431978205 27.233356931451446 29.212033454508678 21.719979182061667 28-29 21.6648063765186 27.19662222654982 29.301166076687984 21.837405320243594 30-31 21.99367316897951 27.01472973927595 29.234352600638076 21.757244491106466 32-33 21.771508160987153 27.191039485524684 29.20885438553926 21.8285979679489 34-35 21.9486948406195 27.31649653945946 29.160466130641016 21.57434248928002 36-37 21.95395961886362 27.18554371022069 29.03663694393544 21.82385972698025 38-39 21.780674849491884 27.31750374991862 29.129707259627303 21.77211414096219 40-41 22.08976936308972 27.1476178054044 28.99335370202772 21.769259129478165 42-43 22.015283897170253 27.18927389801944 28.87599268884563 21.919449515964672 44-45 22.0338693191147 27.32599472578775 28.753151428869444 21.886984526228108 46-47 22.135210388147115 27.28859448706472 28.417866666790847 22.158328457997317 48-49 22.017118675004422 27.400137327169627 28.46141032522272 22.12133367260323 50-51 21.98783283719415 27.5873899637172 28.363126868916837 22.061650330171812 52-53 22.181134112417386 27.570499392880727 28.260651191437592 21.987715303264295 54-55 22.15529567867557 27.44601025609225 28.23301890859497 22.165675156637207 56-57 22.136493779588985 27.651075099989114 28.15589016620849 22.05654095421341 58-59 22.051490189403182 27.74571493058285 28.26767289716511 21.935121982848862 60-61 22.171774779312813 27.724573384309064 28.219005366831674 21.884646469546446 62-63 22.019286783482322 27.868837355656318 28.13699161547064 21.974884245390722 64-65 22.02355053302362 27.81810863627309 28.094172492074176 22.06416833862911 66-67 22.129210323094675 27.867180431462202 27.9366217606469 22.066987484796226 68-69 22.060506508716816 27.73702306826051 28.08326196356185 22.119208459460825 70-71 22.06574631856258 27.463318383470725 28.179377200064444 22.291558097902247 72-73 22.143974499316542 27.46745770210256 28.09622310829283 22.292344690288076 74-75 21.98006666010234 27.583267551966806 28.10940037967559 22.32726540825527 76-77 22.169713891870266 27.502197681556833 28.019164036610245 22.30892438996265 78-79 22.15362041658506 27.59798772683436 27.913982361825823 22.33440949475476 80-81 22.160859089842944 27.602985657245902 27.900585748934155 22.335569503976995 82-83 22.14341856710767 27.587406434534127 27.993313169911772 22.27586182844643 84-85 22.33241049183682 27.566292357354577 27.92251803797527 22.178779112833336 86-87 22.144082240958845 27.59742639796081 27.966324350806893 22.292167010273445 88-89 22.213732665880233 27.60600013521254 27.93319869530826 22.24706850359897 90-91 22.220811591787516 27.635418479313163 27.943699097822865 22.20007083107646 92-93 22.219507024290618 27.563674554299467 27.99713813050021 22.2196802909097 94-95 22.11661782217522 27.71655012692235 27.94269051882737 22.224141532075066 96-97 22.159391254027856 27.70601024553202 27.96567322547877 22.168925274961353 98-99 22.424173651927358 28.28542191764956 27.94809312007544 21.34231131034764 100-101 23.044121095541197 30.796257396226455 25.35344298187061 20.806178526361734 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2791.0 1 2423.0 2 2686.5 3 3538.5 4 4311.0 5 6025.5 6 7927.0 7 10180.0 8 13691.0 9 16207.5 10 15626.0 11 14238.0 12 14938.0 13 18244.5 14 24845.5 15 32761.5 16 39749.5 17 45212.0 18 46775.5 19 43995.0 20 39745.5 21 36065.5 22 34641.0 23 37387.5 24 44556.0 25 56480.5 26 72834.0 27 91231.5 28 111527.5 29 133408.5 30 153987.5 31 177072.0 32 202108.0 33 225609.5 34 249929.5 35 272541.0 36 296817.5 37 320306.0 38 337480.0 39 349749.0 40 364575.5 41 379653.5 42 388195.0 43 397882.5 44 412714.5 45 421540.5 46 420526.0 47 416979.0 48 410679.5 49 401451.0 50 391367.5 51 379955.5 52 362358.5 53 343416.0 54 325705.5 55 304213.0 56 279545.5 57 253006.0 58 226196.0 59 197305.5 60 165437.0 61 134540.0 62 105162.0 63 79747.0 64 59879.0 65 44382.5 66 32935.5 67 25020.0 68 18887.5 69 13760.0 70 9932.0 71 7043.5 72 4933.0 73 3360.0 74 2189.5 75 1424.5 76 882.5 77 537.0 78 351.5 79 218.0 80 144.0 81 95.5 82 63.0 83 39.5 84 24.0 85 18.0 86 18.5 87 15.5 88 7.5 89 4.5 90 4.0 91 3.0 92 2.5 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0010867311128126595 4 0.0 5 0.048683559851965284 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 4.985005104645227E-6 14-15 3.9880040837161815E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.9865711638557366E-6 28-29 4.98826435985379E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 1.5151694216992261E-5 40-41 0.0 42-43 0.0 44-45 1.0271303646697967E-5 46-47 2.742288142459903E-4 48-49 0.0 50-51 4.1974532372228476E-5 52-53 1.0557217877487181E-5 54-55 0.0018210210279085012 56-57 0.0024360283463951108 58-59 7.957104753671156E-4 60-61 0.0027177752789644734 62-63 0.004579057592878824 64-65 0.0019979170068568624 66-67 0.007184786173794391 68-69 0.004188040918107795 70-71 0.0017100694288188101 72-73 7.940541227290051E-4 74-75 5.94328947471436E-4 76-77 0.0 78-79 0.0 80-81 2.2265757637814055E-4 82-83 0.0 84-85 9.001990453359317E-4 86-87 9.862198032575683E-4 88-89 1.0923801628617448E-4 90-91 4.7179646675915104E-4 92-93 2.1658280477331173E-4 94-95 2.4998240748807304E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 409.0 22-23 853.0 24-25 1305.0 26-27 2694.0 28-29 5892.0 30-31 15097.0 32-33 20090.0 34-35 27381.0 36-37 43479.0 38-39 50281.0 40-41 51149.0 42-43 58673.0 44-45 70713.0 46-47 71958.0 48-49 65463.0 50-51 59174.0 52-53 53504.0 54-55 57233.0 56-57 59292.0 58-59 62888.0 60-61 64731.0 62-63 62125.0 64-65 68278.0 66-67 73281.0 68-69 74023.0 70-71 78020.0 72-73 66218.0 74-75 67466.0 76-77 71354.0 78-79 74746.0 80-81 75180.0 82-83 72286.0 84-85 71692.0 86-87 74951.0 88-89 77917.0 90-91 80682.0 92-93 78719.0 94-95 85599.0 96-97 144510.0 98-99 856815.0 100-101 6933858.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.7971395109977 #Duplication Level Percentage of deduplicated Percentage of total 1 88.71078243903916 73.4499902973489 2 7.582137557649317 12.555586023045318 3 1.9822448848263237 4.9237261882178 4 0.7547156409192245 2.499531848492843 5 0.3563264723941827 1.4751406323141405 6 0.18619693737032667 0.9249944279982862 7 0.12172419777138371 0.7054890769319073 8 0.07960455790188721 0.5272823749051079 9 0.05468758936923292 0.4075178369872079 >10 0.1668119027540991 2.125030165115802 >50 0.003877524679787622 0.21222125541405568 >100 7.383741099802485E-4 0.09375972991452577 >500 1.3021854268631036E-4 0.07403419882568742 >1k 2.1702672406396974E-5 0.025695944488413204 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.970010209290454E-6 0.0 0.0 0.0 3 0.0 9.970010209290454E-6 0.0 0.0 0.0 4 0.0 4.9850051046452274E-5 0.0 9.970010209290454E-6 0.0 5 0.0 4.9850051046452274E-5 0.0 9.970010209290454E-6 0.0 6 7.976008167432363E-5 4.9850051046452274E-5 0.0 9.970010209290454E-6 0.0 7 7.976008167432363E-5 5.9820061255742727E-5 0.0 9.970010209290454E-6 0.0 8 7.976008167432363E-5 5.9820061255742727E-5 0.0 9.970010209290454E-6 0.0 9 7.976008167432363E-5 9.970010209290455E-5 0.0 1.9940020418580908E-5 9.970010209290454E-6 10-11 7.976008167432363E-5 9.970010209290455E-5 0.0 1.9940020418580908E-5 9.970010209290454E-6 12-13 7.976008167432363E-5 9.970010209290455E-5 0.0 5.48350561510975E-5 9.970010209290454E-6 14-15 7.976008167432363E-5 1.3459513782542116E-4 0.0 5.9820061255742727E-5 9.970010209290454E-6 16-17 8.973009188361409E-5 1.3958014293006637E-4 0.0 6.480506636038796E-5 9.970010209290454E-6 18-19 8.973009188361409E-5 1.495501531393568E-4 0.0 6.979007146503319E-5 9.970010209290454E-6 20-21 9.471509698825932E-5 1.645051684532925E-4 0.0 7.47750765696784E-5 9.970010209290454E-6 22-23 9.970010209290455E-5 1.8943019397651864E-4 0.0 9.970010209290455E-5 1.4955015313935682E-5 24-25 9.970010209290455E-5 2.1435521949974477E-4 0.0 1.3459513782542113E-4 1.9940020418580908E-5 26-27 9.970010209290455E-5 2.1934022460439E-4 0.0 2.0937021439509956E-4 1.9940020418580908E-5 28-29 9.970010209290455E-5 2.2931023481368045E-4 0.0 6.330956482899438E-4 2.4925025523226134E-5 30-31 9.970010209290455E-5 2.891302960694232E-4 0.0 0.0017148417559979582 2.9910030627871363E-5 32-33 9.970010209290455E-5 3.090703164880041E-4 0.0 0.0038982739918325677 2.9910030627871363E-5 34-35 9.970010209290455E-5 3.838453930576825E-4 0.0 0.006684891845329249 3.9880040837161815E-5 36-37 9.970010209290455E-5 4.636054747320061E-4 0.0 0.011031816296579889 3.9880040837161815E-5 38-39 9.970010209290455E-5 5.03485515569168E-4 0.0 0.01857412901990812 3.9880040837161815E-5 40-41 9.970010209290455E-5 5.982006125574272E-4 0.0 0.038005678917815214 3.9880040837161815E-5 42-43 9.970010209290455E-5 6.330956482899438E-4 0.0 0.04541339650331802 3.9880040837161815E-5 44-45 1.0468510719754978E-4 7.627057810107198E-4 0.0 0.05495469627360898 3.9880040837161815E-5 46-47 1.09670112302195E-4 8.474508677896887E-4 0.0 0.06521882178407351 3.9880040837161815E-5 48-49 1.09670112302195E-4 8.474508677896887E-4 0.0 0.07492961172792241 3.9880040837161815E-5 50-51 1.09670112302195E-4 9.22225944359367E-4 0.0 0.08503920208014293 4.4865045941807045E-5 52-53 1.09670112302195E-4 9.272109494640122E-4 0.0 0.10037307778203164 5.9820061255742727E-5 54-55 1.09670112302195E-4 9.272109494640122E-4 0.0 0.13534288859111793 6.979007146503319E-5 56-57 1.09670112302195E-4 9.272109494640122E-4 0.0 0.173842083014293 6.979007146503319E-5 58-59 1.09670112302195E-4 9.571209800918836E-4 0.0 0.21734123755742726 6.979007146503319E-5 60-61 1.3459513782542116E-4 9.970010209290454E-4 0.0 0.2322015377743747 7.976008167432363E-5 62-63 1.495501531393568E-4 0.0010119560362429811 0.0 0.24080067157988772 8.973009188361409E-5 64-65 1.495501531393568E-4 0.0011365811638591118 0.0 0.24894616992087798 9.471509698825932E-5 66-67 1.5952016334864726E-4 0.0011664911944869831 0.0 0.2542452303471159 9.970010209290455E-5 68-69 1.5952016334864726E-4 0.0011764612046962736 0.0 0.2590557602730985 9.970010209290455E-5 70-71 1.645051684532925E-4 0.0011814462098009189 0.0 0.263602084928535 9.970010209290455E-5 72-73 1.994002041858091E-4 0.001191416220010209 0.0 0.2674704488897397 1.1964012251148545E-4 74-75 1.994002041858091E-4 0.0012213262506380806 0.0 0.27066085215671265 1.1964012251148545E-4 76-77 1.994002041858091E-4 0.0012811463118938232 0.0 0.27339761995916284 1.1964012251148545E-4 78-79 1.994002041858091E-4 0.0013210263527309854 0.0 0.27567576729198573 1.1964012251148545E-4 80-81 1.994002041858091E-4 0.0013309963629402756 0.0 0.2767026783435426 1.1964012251148545E-4 82-83 1.994002041858091E-4 0.0013409663731495662 0.0 0.2770316886804492 1.1964012251148545E-4 84-85 1.994002041858091E-4 0.0013459513782542113 0.0 0.2773307889867279 1.296101327207759E-4 86-87 2.0937021439509956E-4 0.0013559213884635018 0.0 0.27743048908882084 1.296101327207759E-4 88-89 2.2931023481368045E-4 0.001425711459928535 0.0 0.2774952941551812 1.296101327207759E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15050 0.0 52.54787 1 GTATCAA 28060 0.0 39.44524 1 TCAACGC 31830 0.0 34.73203 4 ATCAACG 32025 0.0 34.424885 3 CAACGCA 32995 0.0 33.465904 5 TATCAAC 32935 0.0 33.31426 2 AACGCAG 33930 0.0 32.541824 6 ACGCAGA 39280 0.0 28.0873 7 CGCAGAG 39960 0.0 27.620287 8 GTGGTAT 7030 0.0 27.205679 1 TGGTATC 6635 0.0 26.780495 2 GCAGAGT 46390 0.0 23.75419 9 GAGTACT 27660 0.0 22.02315 12-13 CAGAGTA 44840 0.0 20.985107 10-11 GTACATG 33025 0.0 20.116962 1 GTACTTT 30215 0.0 20.009535 14-15 TACATGG 32285 0.0 19.968037 2 ACATGGG 32705 0.0 19.24324 3 GTGTAGC 6415 0.0 18.69336 1 AGAGTAC 42005 0.0 18.313772 10-11 >>END_MODULE