##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139319_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10837917 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.936489087340306 31.0 18.0 33.0 18.0 33.0 2 27.991536473290946 29.0 25.0 32.0 18.0 33.0 3 28.249569728205152 29.0 27.0 31.0 18.0 33.0 4 31.236706555327928 33.0 31.0 33.0 27.0 33.0 5 31.87021537441189 33.0 32.0 33.0 30.0 34.0 6 35.91651384671058 38.0 36.0 38.0 31.0 38.0 7 36.2408139866729 38.0 37.0 38.0 33.0 38.0 8 36.60055553110436 38.0 37.0 38.0 34.0 38.0 9 36.84510279973541 38.0 38.0 38.0 35.0 38.0 10-11 36.892095685914555 38.0 38.0 38.0 35.0 38.0 12-13 36.95189043245118 38.0 38.0 38.0 35.0 38.0 14-15 36.949351891142925 38.0 38.0 38.0 35.0 38.0 16-17 36.963542809932946 38.0 38.0 38.0 35.0 38.0 18-19 36.976264581099855 38.0 38.0 38.0 35.0 38.0 20-21 36.988734119614406 38.0 38.0 38.0 35.5 38.0 22-23 37.004091664283614 38.0 38.0 38.0 36.0 38.0 24-25 36.99340886842076 38.0 38.0 38.0 36.0 38.0 26-27 36.9635565087634 38.0 38.0 38.0 35.5 38.0 28-29 36.942847263390924 38.0 38.0 38.0 35.0 38.0 30-31 36.939018534604315 38.0 38.0 38.0 35.0 38.0 32-33 36.90571195780345 38.0 38.0 38.0 35.0 38.0 34-35 36.875666872884736 38.0 38.0 38.0 35.0 38.0 36-37 36.84369513819762 38.0 38.0 38.0 35.0 38.0 38-39 36.8058303544608 38.0 38.0 38.0 35.0 38.0 40-41 36.824970995523465 38.0 38.0 38.0 35.0 38.0 42-43 36.77240071220427 38.0 38.0 38.0 35.0 38.0 44-45 36.73217856203975 38.0 38.0 38.0 35.0 38.0 46-47 36.68112150149385 38.0 38.0 38.0 34.5 38.0 48-49 36.64133367803759 38.0 38.0 38.0 34.0 38.0 50-51 36.61124693170653 38.0 38.0 38.0 34.0 38.0 52-53 36.59004772648581 38.0 38.0 38.0 34.0 38.0 54-55 36.57465372488214 38.0 38.0 38.0 34.0 38.0 56-57 36.55732632502277 38.0 38.0 38.0 34.0 38.0 58-59 36.5432970138666 38.0 38.0 38.0 34.0 38.0 60-61 36.54537715109846 38.0 38.0 38.0 34.0 38.0 62-63 36.53457715547113 38.0 38.0 38.0 34.0 38.0 64-65 36.527979756847124 38.0 38.0 38.0 34.0 38.0 66-67 36.49646296603302 38.0 38.0 38.0 34.0 38.0 68-69 36.47908025456546 38.0 38.0 38.0 34.0 38.0 70-71 36.48293972254816 38.0 38.0 38.0 34.0 38.0 72-73 36.466263178996115 38.0 38.0 38.0 34.0 38.0 74-75 36.460007508086775 38.0 38.0 38.0 34.0 38.0 76-77 36.45065630281738 38.0 38.0 38.0 34.0 38.0 78-79 36.437959471074386 38.0 38.0 38.0 34.0 38.0 80-81 36.437356731565785 38.0 38.0 38.0 34.0 38.0 82-83 36.41869102733605 38.0 38.0 38.0 34.0 38.0 84-85 36.411945401789964 38.0 38.0 38.0 34.0 38.0 86-87 36.39934166791129 38.0 38.0 38.0 34.0 38.0 88-89 36.40153145689295 38.0 38.0 38.0 34.0 38.0 90-91 36.40630701397338 38.0 38.0 38.0 34.0 38.0 92-93 36.377615851004435 38.0 38.0 38.0 34.0 38.0 94-95 36.374196209627215 38.0 38.0 38.0 34.0 38.0 96-97 36.372947222092435 38.0 38.0 38.0 34.0 38.0 98-99 36.40079674404718 38.0 38.0 38.0 34.0 38.0 100-101 35.86021168798905 38.0 36.5 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 25.0 19 114.0 20 247.0 21 688.0 22 2185.0 23 6014.0 24 13552.0 25 25858.0 26 43085.0 27 66595.0 28 96579.0 29 129949.0 30 166434.0 31 211433.0 32 269175.0 33 351496.0 34 494659.0 35 806262.0 36 1962516.0 37 6191050.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.10423912639301 18.96824823441626 13.795150857863186 22.132361781327536 2 14.528834276918712 20.07976255953981 41.38498200346063 24.006421160080855 3 19.61105050024876 25.885105179940442 29.64001576702595 24.863828552784845 4 12.718689393912133 18.4875100999574 39.18005646287936 29.613744043251117 5 13.62559780929497 38.14719113290279 34.62889182424622 13.598319233556028 6 29.58131161181618 37.81543076958423 18.781847102169174 13.821410516430419 7 26.338935793658504 33.357037150219924 22.41758264064949 17.886444415472088 8 23.9915197726648 37.044738393918315 20.894024193025285 18.069717640391598 9 25.237589474065913 17.77634023216823 21.226154435395657 35.7599158583702 10-11 24.037234276660357 27.07057546205604 28.492758340924734 20.399431920358865 12-13 25.099805852905398 24.46281533909216 28.783465899557353 21.653912908445086 14-15 22.235312072046337 25.863768618204574 26.613663847120396 25.287255462628693 16-17 21.533058428109385 29.21878807523623 27.241438553183233 22.00671494347115 18-19 21.46848421149562 27.976243036369443 29.420445829212383 21.13482692292255 20-21 22.27038627144055 26.95974068735898 29.52464162577979 21.245231415420676 22-23 21.92164037075933 27.1277511137424 29.370613625716302 21.579994889781972 24-25 21.736130577432817 27.302554973469277 29.51862180057304 21.442692648524865 26-27 21.78538298379687 27.354014919395087 29.491221980907977 21.36938011590006 28-29 21.565884165920757 27.24477480707777 29.652291497212396 21.537049529789073 30-31 22.01363456299623 27.206609296012374 29.423043568375967 21.35671257261542 32-33 21.711052725322528 27.18160069312673 29.492166576792737 21.615180004758002 34-35 21.675412675355872 27.402928114091885 29.64301306626571 21.278646144286537 36-37 21.807987424566374 27.289660281708166 29.359954670986976 21.54239762273848 38-39 21.51745295162307 27.295907997815256 29.554225418248027 21.632413632313646 40-41 21.901496273404632 27.111798424607592 29.422544897030704 21.56416040495707 42-43 21.864174082128326 27.200847087506506 29.246648762686156 21.68833006767901 44-45 21.79976423269246 27.39464204852026 29.099919803774565 21.70567391501271 46-47 22.01384963303416 27.257078124703167 28.67949097519032 22.04958126707236 48-49 21.86270229744058 27.373678172837085 28.69146479762194 22.07215473210039 50-51 21.780157064976517 27.55677430952033 28.712858509311555 21.9502101161916 52-53 21.97027390665551 27.505147975500556 28.7276359801515 21.796942137692437 54-55 21.906647079661585 27.499694648513927 28.568326666001635 22.025331605822846 56-57 22.07404056461557 27.769089395028075 28.271372869964484 21.885497170391876 58-59 21.800153144610093 28.012915374428232 28.570776583968378 21.616154896993297 60-61 22.0134309606951 28.193266382555514 28.22747362801545 21.565829028733933 62-63 21.782740178508185 28.400612539342944 28.161061009390114 21.655586272758757 64-65 21.74827011550283 28.35055651419308 28.166538012314092 21.734635357989994 66-67 21.829748686238055 28.280844999694903 28.0837174127118 21.805688901355243 68-69 21.86680896224772 28.107220201981626 28.173740633791606 21.852230201979047 70-71 21.855550641180095 27.729955253708223 28.37664317771206 22.03785092739962 72-73 21.969401701707344 27.629780846074826 28.357072274184713 22.043745178033117 74-75 21.871141458140006 27.7375683352348 28.318528060935762 22.07276214568943 76-77 21.992456567631546 27.68454620939322 28.238403626994984 22.08459359598025 78-79 21.949562368041203 27.690609181620925 28.2083954843302 22.151432966007672 80-81 22.005251675514938 27.684800303096452 28.233690663683152 22.076257357705458 82-83 22.020298544825653 27.767110834326147 28.258616892346467 21.953973728501737 84-85 22.139688758725327 27.702344306420056 28.186914863099826 21.971052071754787 86-87 22.007361033134327 27.758827271686666 28.192244083902786 22.041567611276225 88-89 22.06213439865435 27.743903225983846 28.13747861930392 22.056483756057887 90-91 22.098068887920647 27.828804251943346 28.09854928293879 21.97457757719722 92-93 22.117708006333295 27.72346789581514 28.168250847841414 21.99057325001015 94-95 21.98400464825543 27.854251512348633 28.118192655846485 22.043551183549454 96-97 22.063054279919395 27.855363002514917 28.089829385682663 21.991753331883025 98-99 22.292240307939267 28.405654453019764 28.148984278733842 21.153120960307138 100-101 22.884123306353555 30.98286141969058 25.521568602261652 20.61144667169422 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2275.0 1 2131.5 2 2840.0 3 4057.5 4 5086.5 5 7217.5 6 9603.5 7 12450.5 8 16842.5 9 19699.0 10 18708.0 11 17212.5 12 18230.0 13 22191.5 14 30271.5 15 40002.5 16 48243.5 17 54621.0 18 56491.0 19 53059.5 20 47706.0 21 42490.5 22 40209.0 23 43475.5 24 51653.0 25 64773.0 26 81596.5 27 101043.0 28 123432.0 29 147831.0 30 173142.5 31 198907.5 32 225018.0 33 251172.5 34 276128.0 35 298893.5 36 323316.5 37 346328.5 38 364733.0 39 380424.0 40 396179.5 41 411111.5 42 420995.0 43 431481.0 44 457470.5 45 473512.0 46 463916.5 47 451638.0 48 439959.0 49 429375.5 50 420617.0 51 407141.5 52 386709.5 53 364043.5 54 340871.5 55 316134.5 56 290093.5 57 260510.5 58 229718.5 59 198161.0 60 163229.5 61 131703.0 62 102967.0 63 77870.0 64 58724.5 65 43648.0 66 32069.0 67 23939.5 68 17823.5 69 12938.5 70 9490.0 71 6976.5 72 4928.5 73 3276.5 74 2047.0 75 1259.5 76 785.0 77 457.0 78 282.0 79 184.5 80 126.5 81 82.5 82 61.5 83 46.0 84 36.5 85 26.0 86 15.5 87 12.0 88 8.5 89 6.0 90 4.5 91 3.0 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0010057283147674964 4 0.0 5 0.0483487740310246 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 4.613432636548149E-6 14-15 2.7680595819288888E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.614921277288375E-6 28-29 4.616496125605627E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 9.344496642802691E-6 40-41 0.0 42-43 0.0 44-45 0.0 46-47 2.871155600411513E-4 48-49 0.0 50-51 5.3368974751914324E-5 52-53 3.4163648267671204E-5 54-55 0.0017820034441266566 56-57 0.0024450915182936558 58-59 8.203042911310639E-4 60-61 0.0026924656253964566 62-63 0.004634738757408404 64-65 0.0022267579099741557 66-67 0.007339127851800966 68-69 0.0044895405316493255 70-71 0.0020269650970679196 72-73 8.518560312826774E-4 74-75 7.202956813772053E-4 76-77 0.0 78-79 0.0 80-81 1.6816964215724328E-4 82-83 0.0 84-85 8.328349193231159E-4 86-87 9.622245653039286E-4 88-89 1.01004432972336E-4 90-91 4.021210697054786E-4 92-93 2.1156679103553766E-4 94-95 2.3093473547667327E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 125.0 20-21 427.0 22-23 1080.0 24-25 1337.0 26-27 2920.0 28-29 6348.0 30-31 15997.0 32-33 20794.0 34-35 28603.0 36-37 45185.0 38-39 54486.0 40-41 54090.0 42-43 62116.0 44-45 75747.0 46-47 77678.0 48-49 69608.0 50-51 62153.0 52-53 58852.0 54-55 61857.0 56-57 64907.0 58-59 65751.0 60-61 66337.0 62-63 66249.0 64-65 79871.0 66-67 85907.0 68-69 84023.0 70-71 99449.0 72-73 68516.0 74-75 69436.0 76-77 74279.0 78-79 77236.0 80-81 77615.0 82-83 75069.0 84-85 75036.0 86-87 78155.0 88-89 81660.0 90-91 84306.0 92-93 82898.0 94-95 90077.0 96-97 154537.0 98-99 920243.0 100-101 7516957.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.28901912723532 #Duplication Level Percentage of deduplicated Percentage of total 1 88.02534694997071 72.43519458847665 2 8.129108353247751 13.378727055355451 3 2.0676533768686047 5.1043550483289994 4 0.8036845365799529 2.64537648811564 5 0.3594257755229083 1.4788397258412995 6 0.2086833586991168 1.03034093373164 7 0.11397431783565631 0.6565184374274345 8 0.07885179820019066 0.5190909704249911 9 0.04792660361159938 0.35494498811684944 >10 0.16097872948613054 2.042169521769174 >50 0.003245683771806405 0.17707706305229365 >100 0.0010799539409739936 0.14618985997885875 >500 2.0281146284088925E-5 0.013251190137879591 >1k 2.02811183680726E-5 0.01792412924273142 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.768059581928889E-5 0.0 9.226865273096298E-6 0.0 3 0.0 2.768059581928889E-5 0.0 9.226865273096298E-6 0.0 4 0.0 3.690746109238519E-5 0.0 9.226865273096298E-6 0.0 5 0.0 3.690746109238519E-5 0.0 9.226865273096298E-6 0.0 6 0.0 3.690746109238519E-5 0.0 9.226865273096298E-6 1.8453730546192595E-5 7 0.0 3.690746109238519E-5 0.0 2.768059581928889E-5 1.8453730546192595E-5 8 0.0 3.690746109238519E-5 0.0 2.768059581928889E-5 2.768059581928889E-5 9 0.0 1.7531044018882964E-4 0.0 5.536119163857778E-5 2.768059581928889E-5 10-11 0.0 1.7531044018882964E-4 0.0 1.1994924855025186E-4 2.768059581928889E-5 12-13 0.0 1.7531044018882964E-4 0.0 1.337895464598963E-4 2.768059581928889E-5 14-15 0.0 2.8141939082943705E-4 0.0 1.4762984436954076E-4 3.690746109238519E-5 16-17 0.0 2.9525968873908153E-4 0.0 1.4762984436954076E-4 3.690746109238519E-5 18-19 4.613432636548149E-6 3.2294028455837043E-4 0.0 1.5685670964263706E-4 3.690746109238519E-5 20-21 9.226865273096298E-6 3.644611782873037E-4 0.0 1.5685670964263706E-4 3.690746109238519E-5 22-23 9.226865273096298E-6 4.4750296574517037E-4 0.0 1.891507380984741E-4 5.074775900202964E-5 24-25 9.226865273096298E-6 5.074775900202964E-4 0.0 2.3067163182740742E-4 6.458805691167408E-5 26-27 9.226865273096298E-6 5.443850511126816E-4 0.0 2.3528506446395556E-4 6.458805691167408E-5 28-29 9.226865273096298E-6 5.443850511126816E-4 0.0 4.2904923519897784E-4 6.458805691167408E-5 30-31 9.226865273096298E-6 6.458805691167408E-4 0.0 9.088462293999853E-4 6.458805691167408E-5 32-33 9.226865273096298E-6 6.458805691167408E-4 0.0 0.0019791626010791557 9.688208536751111E-5 34-35 9.226865273096298E-6 7.519895197573482E-4 0.0 0.0034693013426842076 1.0149551800405927E-4 36-37 9.226865273096298E-6 8.580984703979556E-4 0.0 0.0058775131789623415 1.0149551800405927E-4 38-39 9.226865273096298E-6 8.99619364126889E-4 0.0 0.009605166749293246 1.0149551800405927E-4 40-41 9.226865273096298E-6 0.0010103417474040446 0.0 0.01342970240499166 1.0149551800405927E-4 42-43 9.226865273096298E-6 0.0010380223432233334 0.0 0.017148129110049468 1.0149551800405927E-4 44-45 9.226865273096298E-6 0.0011210641306812 0.0 0.021461688625221985 1.0149551800405927E-4 46-47 9.226865273096298E-6 0.0011810387549563261 0.0 0.026098188424952876 1.0149551800405927E-4 48-49 9.226865273096298E-6 0.001204105918139067 0.0 0.030734688224683768 1.0149551800405927E-4 50-51 9.226865273096298E-6 0.0014024835215106371 0.0 0.03568028801106338 1.1072238327715557E-4 52-53 9.226865273096298E-6 0.0014117103867837333 0.0 0.03992925946932423 1.1072238327715557E-4 54-55 9.226865273096298E-6 0.001430164117329926 0.0 0.04445503688577796 1.1072238327715557E-4 56-57 9.226865273096298E-6 0.0014670715784223113 0.0 0.0492114859340591 1.1072238327715557E-4 58-59 9.226865273096298E-6 0.0014809118763319557 0.0 0.054106337961436685 1.1072238327715557E-4 60-61 9.226865273096298E-6 0.0015085924721512445 0.0 0.05864595567580007 1.1072238327715557E-4 62-63 9.226865273096298E-6 0.0015501133658801778 0.0 0.06285801967296853 1.1072238327715557E-4 64-65 9.226865273096298E-6 0.0017346506713421038 0.0 0.06699165531531567 1.1533581591370371E-4 66-67 9.226865273096298E-6 0.0017531044018882964 0.0 0.07161431481713691 1.245626811868E-4 68-69 9.226865273096298E-6 0.001799238728253778 0.0 0.07620006685786576 1.2917611382334815E-4 70-71 9.226865273096298E-6 0.0018269193240730668 0.0 0.08066125621740783 1.2917611382334815E-4 72-73 9.226865273096298E-6 0.0018545999198923556 0.0 0.08393679338935701 1.5685670964263706E-4 74-75 9.226865273096298E-6 0.0019145745441674817 0.0 0.08652031566582397 1.5685670964263706E-4 76-77 9.226865273096298E-6 0.002020683494808089 0.0 0.08905309018328891 1.5685670964263706E-4 78-79 9.226865273096298E-6 0.0020622043885370226 0.0 0.09114297516764522 1.6147014227918522E-4 80-81 9.226865273096298E-6 0.0020668178211735704 0.0 0.09210256915604724 1.8453730546192596E-4 82-83 9.226865273096298E-6 0.002076044686446667 0.0 0.0924808706322442 2.076044686446667E-4 84-85 9.226865273096298E-6 0.002112952147539052 0.0 0.09278074375361982 2.1221790128121484E-4 86-87 1.8453730546192595E-5 0.002140632743358341 0.0 0.09294221389589899 2.1221790128121484E-4 88-89 1.8453730546192595E-5 0.0022790357224547852 0.0 0.09301602881808377 2.2144476655431113E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17260 0.0 51.939625 1 GTATCAA 32120 0.0 39.78031 1 CTTATAC 8910 0.0 37.386654 1 TCAACGC 37570 0.0 33.8694 4 ATCAACG 37590 0.0 33.781975 3 TATCAAC 38250 0.0 33.038853 2 CAACGCA 38560 0.0 32.95442 5 AACGCAG 39900 0.0 31.974207 6 TATACAC 13930 0.0 28.344255 3 ACGCAGA 46250 0.0 27.546396 7 TGGTATC 7780 0.0 27.175478 2 CGCAGAG 46875 0.0 27.15111 8 GTGGTAT 8390 0.0 27.130077 1 TTATACA 14200 0.0 25.400866 2 GCAGAGT 53680 0.0 23.709171 9 GAGTACT 32640 0.0 21.835146 12-13 ACACATC 16915 0.0 21.286928 6 TACACAT 19100 0.0 21.244669 5 ACATCTC 17560 0.0 21.028248 8 CAGAGTA 52865 0.0 20.466383 10-11 >>END_MODULE