##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139318_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10111957 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.11899575917896 31.0 18.0 33.0 18.0 33.0 2 28.12107952990702 29.0 27.0 33.0 18.0 33.0 3 28.355715812478238 30.0 27.0 31.0 18.0 33.0 4 31.275410585705615 33.0 31.0 33.0 28.0 33.0 5 31.893304728253888 33.0 32.0 33.0 30.0 34.0 6 35.93724152505791 38.0 36.0 38.0 31.0 38.0 7 36.25507159494448 38.0 37.0 38.0 33.0 38.0 8 36.60412875568992 38.0 37.0 38.0 34.0 38.0 9 36.848792968561874 38.0 38.0 38.0 35.0 38.0 10-11 36.895224880802004 38.0 38.0 38.0 35.0 38.0 12-13 36.95533500587473 38.0 38.0 38.0 35.0 38.0 14-15 36.94894934778698 38.0 38.0 38.0 35.0 38.0 16-17 36.96471345754338 38.0 38.0 38.0 35.0 38.0 18-19 36.97555478133461 38.0 38.0 38.0 35.0 38.0 20-21 36.98559861335569 38.0 38.0 38.0 35.5 38.0 22-23 37.00028164973829 38.0 38.0 38.0 36.0 38.0 24-25 36.987234366555505 38.0 38.0 38.0 36.0 38.0 26-27 36.956657883871635 38.0 38.0 38.0 35.5 38.0 28-29 36.93428339175905 38.0 38.0 38.0 35.0 38.0 30-31 36.93154970319749 38.0 38.0 38.0 35.0 38.0 32-33 36.905896654477885 38.0 38.0 38.0 35.0 38.0 34-35 36.88117424881354 38.0 38.0 38.0 35.0 38.0 36-37 36.852016273928626 38.0 38.0 38.0 35.0 38.0 38-39 36.82257728652705 38.0 38.0 38.0 35.0 38.0 40-41 36.827518260840236 38.0 38.0 38.0 35.0 38.0 42-43 36.77301594538526 38.0 38.0 38.0 35.0 38.0 44-45 36.73182806602678 38.0 38.0 38.0 35.0 38.0 46-47 36.68408732379483 38.0 38.0 38.0 34.5 38.0 48-49 36.644394555952104 38.0 38.0 38.0 34.0 38.0 50-51 36.61405091848632 38.0 38.0 38.0 34.0 38.0 52-53 36.591862531697416 38.0 38.0 38.0 34.0 38.0 54-55 36.57629486364017 38.0 38.0 38.0 34.0 38.0 56-57 36.55610109715683 38.0 38.0 38.0 34.0 38.0 58-59 36.54155908164885 38.0 38.0 38.0 34.0 38.0 60-61 36.540827551213546 38.0 38.0 38.0 34.0 38.0 62-63 36.531622972209625 38.0 38.0 38.0 34.0 38.0 64-65 36.52035061361488 38.0 38.0 38.0 34.0 38.0 66-67 36.49181390380758 38.0 38.0 38.0 34.0 38.0 68-69 36.476357030597576 38.0 38.0 38.0 34.0 38.0 70-71 36.48068359563901 38.0 38.0 38.0 34.0 38.0 72-73 36.46205686658698 38.0 38.0 38.0 34.0 38.0 74-75 36.45516374781572 38.0 38.0 38.0 34.0 38.0 76-77 36.44220884215355 38.0 38.0 38.0 34.0 38.0 78-79 36.43109289934269 38.0 38.0 38.0 34.0 38.0 80-81 36.42855282996419 38.0 38.0 38.0 34.0 38.0 82-83 36.40818625621438 38.0 38.0 38.0 34.0 38.0 84-85 36.402347460484584 38.0 38.0 38.0 34.0 38.0 86-87 36.386275849068305 38.0 38.0 38.0 34.0 38.0 88-89 36.38630384101996 38.0 38.0 38.0 34.0 38.0 90-91 36.391345184158396 38.0 38.0 38.0 34.0 38.0 92-93 36.360644449831774 38.0 38.0 38.0 34.0 38.0 94-95 36.355267023404565 38.0 38.0 38.0 34.0 38.0 96-97 36.351640138913936 38.0 37.5 38.0 34.0 38.0 98-99 36.382912937764765 38.0 37.5 38.0 34.0 38.0 100-101 35.84396656447052 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 16.0 19 42.0 20 164.0 21 535.0 22 1852.0 23 5458.0 24 12633.0 25 23708.0 26 40244.0 27 62200.0 28 89171.0 29 119691.0 30 156651.0 31 197390.0 32 252162.0 33 330965.0 34 463494.0 35 752565.0 36 1804375.0 37 5798641.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.173659262989354 18.773823899765397 13.76209372725774 22.29042310998751 2 14.601515809452117 20.034094290551273 41.18383810374194 24.180551796254672 3 19.749476184038674 25.55366459540106 29.47823707484672 25.21862214571355 4 12.845139669798833 18.30798924481186 38.97799407177068 29.86887701361863 5 13.818354983511922 37.96693756475092 34.53183284177628 13.68287460996088 6 29.972239794927923 37.58513806971291 18.61987743816553 13.82274469719363 7 26.661179433417292 33.123983814409016 22.249026573194485 17.965810178979204 8 24.203138917620002 36.88982261297195 20.759225934208384 18.147812535199666 9 25.328489826450014 17.6749466003465 21.091100367614303 35.905463205589186 10-11 24.24607818249227 26.93702119184249 28.354046600475062 20.46285402519018 12-13 25.2187731810964 24.32269539912007 28.628489025418126 21.830042394365403 14-15 22.331543323301148 25.7274298455358 26.46897293693321 25.472053894229845 16-17 21.70998155945481 29.027121060740267 27.120487161881723 22.142410217923196 18-19 21.70208496733125 27.83675800836574 29.167598319494438 21.293558704808575 20-21 22.503135701325576 26.92364632789917 29.19475150401418 21.37846646676107 22-23 22.153023410811244 26.977369511218964 29.09427853031753 21.77532854765226 24-25 22.074277842222788 27.082425014757295 29.215491674988247 21.627805468031667 26-27 21.947644396503968 27.238636471552795 29.164961886793648 21.64875724514959 28-29 21.779159347275208 27.14754705718902 29.27043940889663 21.802854186639138 30-31 22.0668848084842 27.054640821594887 29.238292108411766 21.64018226150914 32-33 21.656988484908318 27.059342319339187 29.386355491805137 21.897313703947358 34-35 21.840368344741552 27.15726667597071 29.183171697516165 21.81919328177157 36-37 21.894940433262907 27.145258239610666 29.24132780401357 21.71847352311286 38-39 21.737156234126633 27.199978267261354 29.2629875001232 21.799877998488814 40-41 22.043821044716704 27.083854378184068 29.16114459648008 21.711179980619143 42-43 22.03753217706414 27.094730599990918 28.98729825685927 21.880438966085674 44-45 21.992058977795555 27.316327035448218 28.821365502695212 21.870248484061015 46-47 22.161862554931265 27.211800346208626 28.46181006312518 22.16452703573493 48-49 22.040194392974488 27.328669915953775 28.458100161177285 22.173035529894456 50-51 21.9640733647193 27.456390348210675 28.48205105417387 22.097485232896155 52-53 22.151930436854496 27.408093019119367 28.492536087094933 21.947440456931204 54-55 22.090145128814427 27.353568054931344 28.360483153418077 22.19580366283616 56-57 22.21291485961821 27.606682097949836 28.1190128414582 22.061390200973758 58-59 21.99457592356862 27.820343431654383 28.38062589618986 21.804454748587144 60-61 22.181024597341732 27.949407619239985 28.11100038905415 21.758567394364125 62-63 21.97428959305742 28.152650739065834 28.047590019724606 21.825469648152144 64-65 21.95928377207809 28.09855505620897 28.0123264437592 21.92983472795374 66-67 22.045745816523777 28.024410265622183 27.93754802714494 21.9922958907091 68-69 22.010392950784404 27.894406472883915 28.072695815755566 22.02250476057612 70-71 22.057554458780388 27.502621084615136 28.225435466561894 22.214388990042583 72-73 22.173622988746214 27.435543621352927 28.187971481063972 22.202861908836883 74-75 22.019096247310912 27.609602144806587 28.14130669693703 22.229994910945468 76-77 22.140023982819343 27.530305290937445 28.079222697720958 22.250448028522253 78-79 22.13142665288394 27.614645720536647 27.994371338630923 22.25955628794849 80-81 22.15894327936306 27.601219155688444 27.981884815243752 22.257952749704746 82-83 22.195674755679466 27.58700886986662 28.08661537697668 22.13070099747723 84-85 22.315133186465467 27.552057694565697 27.993608290630824 22.13920082833802 86-87 22.13460581603732 27.56414103055948 28.0943395552606 22.20691359814261 88-89 22.23297489516439 27.59878885480138 27.973184887430964 22.195051362603266 90-91 22.25846233906347 27.64899324169829 27.970250331761328 22.122294087476913 92-93 22.279975776846815 27.61270763378132 27.969973327995774 22.137343261376095 94-95 22.124103290166644 27.744184526560893 27.95272402140807 22.178988161864396 96-97 22.214369006162585 27.704260833586712 27.98393422169082 22.09743593855988 98-99 22.473802279658184 28.287079353513366 27.995969067704817 21.24314929912363 100-101 23.07749000225028 30.834806930127566 25.343258586557415 20.74444448106474 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2041.0 1 1848.5 2 2418.0 3 3489.5 4 4360.0 5 6207.5 6 8344.0 7 10850.0 8 14638.0 9 17236.5 10 16529.0 11 15107.0 12 16007.5 13 19516.0 14 26516.0 15 35047.0 16 42406.0 17 48039.0 18 49344.0 19 46225.0 20 41480.0 21 36690.0 22 34658.5 23 37369.5 24 44415.0 25 56236.0 26 72500.5 27 90968.5 28 110937.0 29 132693.5 30 152943.0 31 174824.0 32 199095.5 33 222476.5 34 246487.0 35 269184.5 36 293117.0 37 314297.0 38 329566.5 39 342898.5 40 358188.5 41 373159.5 42 384356.5 43 393216.0 44 402384.0 45 419177.5 46 427063.0 47 423048.5 48 418613.5 49 407905.5 50 394695.0 51 381190.5 52 362769.5 53 342018.0 54 322803.0 55 301254.0 56 277092.5 57 251715.0 58 225062.5 59 195203.5 60 162851.0 61 132304.0 62 103575.5 63 78671.5 64 59132.0 65 43780.5 66 32320.5 67 24349.5 68 18317.5 69 13428.5 70 9694.0 71 7042.5 72 4915.0 73 3277.5 74 2178.0 75 1397.5 76 845.0 77 467.0 78 279.5 79 180.0 80 118.0 81 83.0 82 62.5 83 40.5 84 23.5 85 17.5 86 15.0 87 11.0 88 7.0 89 4.5 90 4.5 91 3.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0010284853861621446 4 0.0 5 0.04903106292876839 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.4723206398128474E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.4838507331236586E-5 28-29 9.895526005095999E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 3.5020515017697367E-5 40-41 0.0 42-43 0.0 44-45 5.079458218891023E-6 46-47 2.8639250993577444E-4 48-49 0.0 50-51 3.625321190509903E-5 52-53 5.206884355046406E-6 54-55 0.0017482949413347596 56-57 0.0023898054898359045 58-59 8.100786491064912E-4 60-61 0.0025353926971741878 62-63 0.0045059202219591655 64-65 0.0019190295661543127 66-67 0.006982810611678463 68-69 0.004153855297632215 70-71 0.0016835155292716157 72-73 8.123401818061839E-4 74-75 6.72039661092639E-4 76-77 0.0 78-79 5.680008324620201E-6 80-81 1.2018476175116522E-4 82-83 0.0 84-85 8.191750639857062E-4 86-87 8.840076574967948E-4 88-89 8.262200703254918E-5 90-91 4.106455759098879E-4 92-93 1.9811699997550553E-4 94-95 3.028631225866352E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 106.0 20-21 440.0 22-23 936.0 24-25 1193.0 26-27 2580.0 28-29 5403.0 30-31 13705.0 32-33 18360.0 34-35 24746.0 36-37 38727.0 38-39 46372.0 40-41 46511.0 42-43 53562.0 44-45 65344.0 46-47 66443.0 48-49 59796.0 50-51 52721.0 52-53 49882.0 54-55 52873.0 56-57 54885.0 58-59 55961.0 60-61 55393.0 62-63 55509.0 64-65 66379.0 66-67 71345.0 68-69 69594.0 70-71 82222.0 72-73 58362.0 74-75 59761.0 76-77 63547.0 78-79 65867.0 80-81 66666.0 82-83 64543.0 84-85 65027.0 86-87 67624.0 88-89 70078.0 90-91 73009.0 92-93 73070.0 94-95 80074.0 96-97 141706.0 98-99 877633.0 100-101 7174002.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.49239115081296 #Duplication Level Percentage of deduplicated Percentage of total 1 88.33071654509371 72.86612019869456 2 7.91019790035667 13.050622785531237 3 2.01853834291165 4.99542163609145 4 0.7612087678590636 2.5117572570263302 5 0.3596304978227851 1.4833389848079388 6 0.20215684045363094 1.0005840693908046 7 0.11565307523974902 0.6678349104330245 8 0.07797653173064108 0.5145976444886258 9 0.05115963205658444 0.37982523408690894 >10 0.16838756037340588 2.1518685490454565 >50 0.0033899509021707145 0.18768675582145758 >100 8.973774098428592E-4 0.12854748496493879 >500 6.523360138656146E-5 0.03842218608062913 >1k 2.174418877402059E-5 0.0233723035366152 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.889282559251389E-6 0.0 9.889282559251389E-6 0.0 3 0.0 1.9778565118502777E-5 0.0 9.889282559251389E-6 0.0 4 0.0 7.911426047401111E-5 0.0 9.889282559251389E-6 0.0 5 0.0 8.900354303326251E-5 0.0 9.889282559251389E-6 0.0 6 0.0 1.0878210815176528E-4 0.0 9.889282559251389E-6 0.0 7 0.0 1.0878210815176528E-4 0.0 9.889282559251389E-6 0.0 8 0.0 1.1867139071101667E-4 0.0 9.889282559251389E-6 0.0 9 0.0 1.977856511850278E-4 0.0 9.889282559251389E-6 9.889282559251389E-6 10-11 0.0 2.027302924646535E-4 0.0 2.9667847677754168E-5 9.889282559251389E-6 12-13 0.0 2.0767493374427917E-4 0.0 2.9667847677754168E-5 9.889282559251389E-6 14-15 0.0 2.670106290997875E-4 0.0 2.9667847677754168E-5 1.4833923838877084E-5 16-17 0.0 2.670106290997875E-4 0.0 2.9667847677754168E-5 1.9778565118502777E-5 18-19 0.0 2.867891942182903E-4 0.0 2.9667847677754168E-5 1.9778565118502777E-5 20-21 0.0 3.2140168317567014E-4 0.0 2.9667847677754168E-5 1.9778565118502777E-5 22-23 0.0 3.3623560701454724E-4 0.0 3.461248895737986E-5 2.9667847677754168E-5 24-25 0.0 3.659034546923014E-4 0.0 3.9557130237005555E-5 3.9557130237005555E-5 26-27 0.0 3.659034546923014E-4 0.0 6.922497791475972E-5 3.9557130237005555E-5 28-29 0.0 3.659034546923014E-4 0.0 2.1756421630353054E-4 3.9557130237005555E-5 30-31 0.0 4.4007307388668683E-4 0.0 7.515854745031056E-4 3.9557130237005555E-5 32-33 0.0 4.549069977255639E-4 0.0 0.0016960119589116132 5.9335695355508335E-5 34-35 0.0 5.34021258199575E-4 0.0 0.002754165192751512 5.9335695355508335E-5 36-37 0.0 6.180801599532118E-4 0.0 0.004796302041236924 5.9335695355508335E-5 38-39 0.0 6.329140837920889E-4 0.0 0.007713640396216083 5.9335695355508335E-5 40-41 0.0 7.219176268253514E-4 0.0 0.010873266173896903 5.9335695355508335E-5 42-43 0.0 7.318069093846028E-4 0.0 0.01384994022423157 5.9335695355508335E-5 44-45 0.0 7.812533221808597E-4 0.0 0.017449639075799078 5.9335695355508335E-5 46-47 0.0 8.306997349771167E-4 0.0 0.021509189566371774 5.9335695355508335E-5 48-49 0.0 8.504783000956195E-4 0.0 0.025415456177276072 5.9335695355508335E-5 50-51 0.0 0.0010284853861621444 0.0 0.02921788532130823 5.9335695355508335E-5 52-53 0.0 0.0010383746687213959 0.0 0.033049982313018145 6.428033663513402E-5 54-55 0.0 0.0010581532338398984 0.0 0.03706008639079458 6.922497791475972E-5 56-57 0.0 0.00106804251639915 0.0 0.041188861859282035 6.922497791475972E-5 58-59 0.0 0.0010779317989584015 0.0 0.044941844590517935 6.922497791475972E-5 60-61 0.0 0.0011273782117546584 4.944641279625694E-6 0.049021173646209136 6.922497791475972E-5 62-63 0.0 0.0011570460594324127 9.889282559251389E-6 0.05321917409261135 6.922497791475972E-5 64-65 0.0 0.0012658281675841777 9.889282559251389E-6 0.05672986940114559 6.922497791475972E-5 66-67 0.0 0.0012757174501434293 9.889282559251389E-6 0.06019606293816321 6.922497791475972E-5 68-69 0.0 0.0013053852978211833 9.889282559251389E-6 0.06410727419034713 6.922497791475972E-5 70-71 0.0 0.0013399977867785632 9.889282559251389E-6 0.06778114266110902 7.911426047401111E-5 72-73 0.0 0.0013548317106174402 9.889282559251389E-6 0.07073803814632518 9.88928255925139E-5 74-75 0.0 0.0013844995582951943 9.889282559251389E-6 0.07333891945940829 9.88928255925139E-5 76-77 0.0 0.0014339459710914514 9.889282559251389E-6 0.07550467233988437 9.88928255925139E-5 78-79 0.0 0.0014636138187692055 9.889282559251389E-6 0.07748252885173464 9.88928255925139E-5 80-81 0.0 0.0014685584600488313 9.889282559251389E-6 0.07846156782510053 9.88928255925139E-5 82-83 0.0 0.001473503101328457 9.889282559251389E-6 0.07888680697514833 1.1867139071101667E-4 84-85 0.0 0.0014784477426080826 9.889282559251389E-6 0.07926259971239988 1.1867139071101667E-4 86-87 0.0 0.0015031709490062111 9.889282559251389E-6 0.07941093895078866 1.1867139071101667E-4 88-89 0.0 0.0015872298507598479 9.889282559251389E-6 0.07944060679846641 1.1867139071101667E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16215 0.0 50.904305 1 GTATCAA 28970 0.0 38.780777 1 TCAACGC 33870 0.0 33.053005 4 ATCAACG 34180 0.0 32.650185 3 TATCAAC 34630 0.0 32.124054 2 CTTATAC 7860 0.0 31.975542 1 CAACGCA 35035 0.0 31.966497 5 AACGCAG 35985 0.0 31.168892 6 ACGCAGA 41360 0.0 27.065018 7 CGCAGAG 41900 0.0 26.71634 8 TATACAC 12290 0.0 24.647362 3 GCAGAGT 48525 0.0 23.068823 9 GTGGTAT 8330 0.0 22.813814 1 TGGTATC 7995 0.0 22.00493 2 GAGTACT 28960 0.0 21.822668 12-13 TTATACA 12440 0.0 21.620962 2 CAGAGTA 47195 0.0 20.43656 10-11 GTACTTT 31970 0.0 19.610147 14-15 ACATCTC 14105 0.0 18.934628 8 GTACATG 32545 0.0 18.710052 1 >>END_MODULE