Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139317_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10006451 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14885 | 0.0 | 52.660725 | 1 |
GTATCAA | 27850 | 0.0 | 40.357334 | 1 |
TCAACGC | 32485 | 0.0 | 34.598927 | 4 |
ATCAACG | 32685 | 0.0 | 34.225437 | 3 |
CAACGCA | 33665 | 0.0 | 33.4124 | 5 |
TATCAAC | 33775 | 0.0 | 33.14702 | 2 |
AACGCAG | 34795 | 0.0 | 32.34835 | 6 |
TGGTATC | 6690 | 0.0 | 29.34149 | 2 |
GTGGTAT | 7250 | 0.0 | 29.08293 | 1 |
ACGCAGA | 40230 | 0.0 | 27.94527 | 7 |
CGCAGAG | 40990 | 0.0 | 27.43789 | 8 |
GCAGAGT | 47580 | 0.0 | 23.683975 | 9 |
GAGTACT | 28455 | 0.0 | 21.900568 | 12-13 |
CTTATAC | 6405 | 0.0 | 21.211912 | 1 |
CAGAGTA | 46675 | 0.0 | 20.261013 | 10-11 |
GTACTTT | 31045 | 0.0 | 19.981255 | 14-15 |
GTACATG | 33095 | 0.0 | 19.41983 | 1 |
TACATGG | 32420 | 0.0 | 19.239096 | 2 |
GTGTAGC | 6305 | 0.0 | 18.81982 | 1 |
ACATGGG | 32755 | 0.0 | 18.692186 | 3 |