##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139317_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10006451 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.019230394472526 31.0 18.0 33.0 18.0 33.0 2 28.01408331485359 29.0 25.0 32.0 18.0 33.0 3 28.26017226287322 29.0 27.0 31.0 18.0 33.0 4 31.23549288354083 33.0 31.0 33.0 27.0 33.0 5 31.869513776662675 33.0 32.0 33.0 30.0 34.0 6 35.929343480520714 38.0 36.0 38.0 31.0 38.0 7 36.247949447811216 38.0 37.0 38.0 33.0 38.0 8 36.59332564562601 38.0 37.0 38.0 34.0 38.0 9 36.83716184689257 38.0 38.0 38.0 35.0 38.0 10-11 36.88019588563418 38.0 38.0 38.0 35.0 38.0 12-13 36.94354017223489 38.0 38.0 38.0 35.0 38.0 14-15 36.934727307413986 38.0 38.0 38.0 35.0 38.0 16-17 36.94860570446005 38.0 38.0 38.0 35.0 38.0 18-19 36.95810382722106 38.0 38.0 38.0 35.0 38.0 20-21 36.97208126866093 38.0 38.0 38.0 35.0 38.0 22-23 36.98470789060934 38.0 38.0 38.0 36.0 38.0 24-25 36.97048701780446 38.0 38.0 38.0 35.0 38.0 26-27 36.94116361646052 38.0 38.0 38.0 35.0 38.0 28-29 36.91931393296725 38.0 38.0 38.0 35.0 38.0 30-31 36.918886610953706 38.0 38.0 38.0 35.0 38.0 32-33 36.89614007903819 38.0 38.0 38.0 35.0 38.0 34-35 36.87060079198484 38.0 38.0 38.0 35.0 38.0 36-37 36.84265720653075 38.0 38.0 38.0 35.0 38.0 38-39 36.81940089944996 38.0 38.0 38.0 35.0 38.0 40-41 36.815890566082025 38.0 38.0 38.0 35.0 38.0 42-43 36.75860391416644 38.0 38.0 38.0 35.0 38.0 44-45 36.71779955794973 38.0 38.0 38.0 35.0 38.0 46-47 36.670990990058456 38.0 38.0 38.0 34.0 38.0 48-49 36.629905705225525 38.0 38.0 38.0 34.0 38.0 50-51 36.6005828374336 38.0 38.0 38.0 34.0 38.0 52-53 36.57724068279154 38.0 38.0 38.0 34.0 38.0 54-55 36.56335399376754 38.0 38.0 38.0 34.0 38.0 56-57 36.54191642706444 38.0 38.0 38.0 34.0 38.0 58-59 36.528240777915244 38.0 38.0 38.0 34.0 38.0 60-61 36.52795471362265 38.0 38.0 38.0 34.0 38.0 62-63 36.514793529796265 38.0 38.0 38.0 34.0 38.0 64-65 36.50407228485975 38.0 38.0 38.0 34.0 38.0 66-67 36.4773685712327 38.0 38.0 38.0 34.0 38.0 68-69 36.46054055666517 38.0 38.0 38.0 34.0 38.0 70-71 36.463758016792966 38.0 38.0 38.0 34.0 38.0 72-73 36.44663425598331 38.0 38.0 38.0 34.0 38.0 74-75 36.43875504636809 38.0 38.0 38.0 34.0 38.0 76-77 36.4264242919385 38.0 38.0 38.0 34.0 38.0 78-79 36.411496369853666 38.0 38.0 38.0 34.0 38.0 80-81 36.40686255020299 38.0 38.0 38.0 34.0 38.0 82-83 36.38640495087897 38.0 38.0 38.0 34.0 38.0 84-85 36.37887897884403 38.0 38.0 38.0 34.0 38.0 86-87 36.36218505347314 38.0 38.0 38.0 34.0 38.0 88-89 36.36028123405792 38.0 38.0 38.0 34.0 38.0 90-91 36.364550898897605 38.0 38.0 38.0 34.0 38.0 92-93 36.333107599636435 38.0 37.0 38.0 34.0 38.0 94-95 36.32459078684349 38.0 37.0 38.0 33.5 38.0 96-97 36.322701503742366 38.0 37.0 38.0 33.5 38.0 98-99 36.34953489169084 38.0 37.0 38.0 34.0 38.0 100-101 35.801385147139186 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 45.0 20 115.0 21 478.0 22 1939.0 23 5668.0 24 13068.0 25 24224.0 26 40606.0 27 62035.0 28 89556.0 29 121049.0 30 154013.0 31 196530.0 32 250432.0 33 330518.0 34 464796.0 35 756547.0 36 1822034.0 37 5672794.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.279869955891456 18.80439928202317 13.817006649010724 22.098724113074656 2 14.598522493139676 20.12415790573501 41.156989625992274 24.120329975133043 3 19.761171417321417 25.697008096866586 29.42404515537149 25.1177753304405 4 12.833561069753902 18.271153279019707 39.29766907368057 29.59761657754583 5 13.762322800532957 38.14347570214392 34.52711780996246 13.56708368736066 6 29.810809047083726 37.81609483722051 18.71534672982459 13.657749385871174 7 26.625054177550062 33.24483375774288 22.409883384228834 17.720228680478222 8 24.20172746561193 36.979414579654666 20.77197999570477 18.04687795902863 9 25.39683650077335 17.760322815751557 21.207329151964068 35.63551153151102 10-11 24.149246321198195 27.095975386278308 28.422964345700592 20.331813946822905 12-13 25.122443511690605 24.415264712733816 28.78834363951815 21.67394813605743 14-15 22.268405218894596 25.850820098659376 26.64632211918145 25.234452563264583 16-17 21.58623471998214 29.138597690629776 27.27282130297745 22.00234628641064 18-19 21.529111570126112 28.044573445670196 29.330858663076448 21.09545632112724 20-21 22.44171793855768 27.065607200267433 29.35706972460836 21.135605136566532 22-23 22.03814825549437 27.065287785962 29.279705567826337 21.61685839071729 24-25 21.785646049801784 27.191145465250443 29.400191300442696 21.623017184505073 26-27 21.714631543295948 27.3745882855364 29.32132242065912 21.589457750508533 28-29 21.59486548030598 27.355855256536238 29.42788899107142 21.621390272086362 30-31 21.993627022704732 27.167437768897507 29.23555296686712 21.603382241530635 32-33 21.770480068283934 27.300498418187775 29.314337220476684 21.61468429305161 34-35 21.874907732104848 27.42135561648612 29.261847800303254 21.441888851105777 36-37 21.829285389695148 27.31419261894863 29.188582285089964 21.667939706266257 38-39 21.641440584715504 27.419301166576698 29.31380869687647 21.625449551831327 40-41 21.99353886124843 27.27854892584356 29.128760553698065 21.59915165920994 42-43 21.896596575096293 27.30753875299776 29.024193424014115 21.771671247891824 44-45 21.918163599852257 27.471297257616005 28.88748072913108 21.723058413400658 46-47 21.984322440046576 27.447834145195888 28.54015266843885 22.027690746318683 48-49 21.925429286434508 27.536226978535144 28.592121295786793 21.94622243924356 50-51 21.89123830538144 27.723199602162662 28.479701420816195 21.905860671639704 52-53 22.05013188303263 27.667832814352835 28.42013767250548 21.861897630109052 54-55 21.984263618549996 27.577928518004708 28.44505438225736 21.992753481187936 56-57 22.03141144633492 27.820023637228147 28.262450677433115 21.886114239003813 58-59 21.93359966102125 27.930569360750866 28.393729236065063 21.742101742162816 60-61 22.035649626331644 27.989154149469826 28.278929522616664 21.696266701581873 62-63 21.90887328868447 28.080807193446873 28.239347090665994 21.77097242720266 64-65 21.91813305989402 27.990218329405742 28.247666889471628 21.843981721228605 66-67 22.00294347292897 27.998687762068613 28.10605268372759 21.892316081274828 68-69 21.955717005700908 27.862695833900325 28.25309688889479 21.928490271503975 70-71 21.928168437671854 27.632028117458002 28.311745883936567 22.128057560933577 72-73 22.007212354200593 27.634047714440218 28.298607339414417 22.06013259194477 74-75 21.870360159006008 27.74214179015094 28.26086047652085 22.126637574322203 76-77 21.995819603093775 27.70565414862391 28.182684175171268 22.115842073111047 78-79 21.997202700112073 27.76044349443344 28.117068014114686 22.125285791339802 80-81 22.025515248138902 27.73049964192051 28.120217997154175 22.123767112786414 82-83 22.052533505789345 27.734727724838713 28.21450472265766 21.998234046714277 84-85 22.208466289724182 27.696347407545836 28.11953363953102 21.97565266319896 86-87 21.98755058100081 27.76236602443511 28.145686026044594 22.10439736851949 88-89 22.07350917400509 27.759772083566585 28.101533762485175 22.06518497994315 90-91 22.119686237608995 27.814602885931052 28.115958085081587 21.94975279137837 92-93 22.151341721939673 27.742360704590695 28.11692043819196 21.989377135277675 94-95 22.00018185622515 27.878345869439546 28.085852238218973 22.03562003611633 96-97 22.097019002647492 27.86261432602815 28.097686112411075 21.94268055891328 98-99 22.287091446193404 28.4319318218112 28.119954150416444 21.16102258157895 100-101 22.886069438793214 31.0140614348899 25.508587814832236 20.59128131148465 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2059.0 1 1912.0 2 2403.0 3 3347.5 4 4240.0 5 6079.5 6 8068.5 7 10422.0 8 14018.5 9 16441.0 10 15857.5 11 14641.0 12 15505.5 13 18920.0 14 25899.5 15 34346.0 16 41656.0 17 47183.5 18 48541.0 19 45530.0 20 40793.5 21 36223.5 22 34345.0 23 37183.5 24 44791.0 25 57361.0 26 74307.5 27 93538.0 28 114118.5 29 135834.5 30 157004.5 31 179281.5 32 204150.5 33 229022.0 34 252407.5 35 275116.5 36 299018.0 37 320089.0 38 335119.5 39 348033.0 40 364546.5 41 378675.0 42 385645.0 43 392409.5 44 400739.5 45 410612.0 46 415499.0 47 413584.5 48 409020.5 49 399857.5 50 390090.5 51 377460.5 52 357229.0 53 335563.0 54 314901.0 55 291642.5 56 266624.0 57 240085.5 58 212523.5 59 184330.0 60 153707.0 61 123683.0 62 96259.5 63 73228.5 64 54857.5 65 40316.0 66 29772.5 67 22765.5 68 17296.5 69 12687.5 70 9243.0 71 6592.5 72 4600.0 73 3065.0 74 1978.0 75 1230.0 76 776.5 77 474.5 78 289.0 79 178.0 80 120.0 81 79.5 82 58.0 83 46.0 84 34.0 85 23.0 86 18.5 87 16.0 88 11.0 89 7.5 90 5.5 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0011092844006331515 4 0.0 5 0.04865861033047581 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.4983882897143054E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.998354291849409E-6 28-29 4.999960500312048E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 1.0114504280053631E-5 40-41 0.0 42-43 0.0 44-45 5.1371857191785165E-6 46-47 3.051911093795108E-4 48-49 0.0 50-51 4.715200081394831E-5 52-53 1.580383604405119E-5 54-55 0.0019013117515206917 56-57 0.002572555656682381 58-59 9.05406649199283E-4 60-61 0.002808302571370234 62-63 0.0044302010438247745 64-65 0.0022583654027584677 66-67 0.007161542429283063 68-69 0.004187276465398798 70-71 0.0016719847858301742 72-73 7.578421505741412E-4 74-75 6.384154460831884E-4 76-77 0.0 78-79 0.0 80-81 1.788807397491815E-4 82-83 0.0 84-85 7.964582438903893E-4 86-87 8.61372584233389E-4 88-89 7.729602797117311E-5 90-91 3.1173751701067703E-4 92-93 1.5115382059722326E-4 94-95 1.2196928435315207E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 423.0 22-23 1057.0 24-25 1149.0 26-27 2457.0 28-29 5675.0 30-31 14283.0 32-33 18391.0 34-35 24811.0 36-37 39562.0 38-39 47540.0 40-41 47121.0 42-43 55060.0 44-45 65650.0 46-47 66138.0 48-49 59844.0 50-51 53457.0 52-53 49879.0 54-55 52708.0 56-57 54538.0 58-59 56018.0 60-61 56027.0 62-63 54377.0 64-65 61112.0 66-67 64252.0 68-69 63944.0 70-71 69644.0 72-73 57128.0 74-75 57840.0 76-77 61021.0 78-79 63884.0 80-81 65026.0 82-83 63195.0 84-85 62467.0 86-87 64654.0 88-89 68142.0 90-91 70974.0 92-93 70007.0 94-95 76775.0 96-97 136456.0 98-99 864309.0 100-101 7139369.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.28797523289808 #Duplication Level Percentage of deduplicated Percentage of total 1 88.71944828314466 73.89263211282935 2 7.760751175930161 12.927545034591118 3 1.9080523660463689 4.767534546190276 4 0.7212073527671059 2.402716005402028 5 0.3453258489429851 1.4380745377021424 6 0.17806624327264547 0.8898466115704379 7 0.11081510856013935 0.6460696212031458 8 0.06620503697582611 0.44112667839485653 9 0.042217259740723705 0.31645710753175993 >10 0.14293281724340096 1.8082611904361678 >50 0.004011015763220284 0.23000013295398405 >100 8.422487740235569E-4 0.11282480847512391 >500 8.349613529987776E-5 0.04914854350789935 >1k 4.174670341175148E-5 0.07776306921176357 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.993553158857221E-6 2 0.0 3.9974212635428884E-5 0.0 0.0 9.993553158857221E-6 3 0.0 3.9974212635428884E-5 0.0 0.0 9.993553158857221E-6 4 0.0 8.994197842971499E-5 0.0 0.0 9.993553158857221E-6 5 0.0 9.993553158857222E-5 0.0 0.0 9.993553158857221E-6 6 8.994197842971499E-5 9.993553158857222E-5 0.0 0.0 9.993553158857221E-6 7 8.994197842971499E-5 9.993553158857222E-5 0.0 0.0 9.993553158857221E-6 8 8.994197842971499E-5 1.1992263790628665E-4 0.0 0.0 9.993553158857221E-6 9 8.994197842971499E-5 1.499032973828583E-4 0.0 0.0 3.9974212635428884E-5 10-11 8.994197842971499E-5 1.499032973828583E-4 0.0 0.0 3.9974212635428884E-5 12-13 8.994197842971499E-5 1.499032973828583E-4 0.0 4.9967765794286105E-6 3.9974212635428884E-5 14-15 9.993553158857222E-5 2.5983238213028774E-4 0.0 9.993553158857221E-6 6.495809553257194E-5 16-17 1.5989685054171554E-4 2.5983238213028774E-4 0.0 9.993553158857221E-6 9.49387550091436E-5 18-19 1.5989685054171554E-4 2.748227118685736E-4 0.0 9.993553158857221E-6 1.1992263790628665E-4 20-21 1.5989685054171554E-4 2.8981304160685944E-4 0.0 9.993553158857221E-6 1.2991619106514387E-4 22-23 1.7488718028000136E-4 3.297872542422883E-4 0.0 9.993553158857221E-6 1.3990974422400108E-4 24-25 1.7988395685942997E-4 3.497743605600027E-4 0.0 1.9987106317714442E-5 1.5490007396228692E-4 26-27 1.7988395685942997E-4 3.5976791371885995E-4 0.0 3.4977436056000276E-5 1.6489362712114415E-4 28-29 1.7988395685942997E-4 3.697614668777172E-4 0.0 2.1486139291543023E-4 1.6989040370057277E-4 30-31 1.848807334388586E-4 3.797550200365744E-4 0.0 6.845583913817196E-4 1.6989040370057277E-4 32-33 1.898775100182872E-4 3.8974857319543164E-4 0.0 0.0017338814730617279 1.6989040370057277E-4 34-35 1.898775100182872E-4 4.5470666872800356E-4 0.0 0.0032029337874137395 1.9487428659771582E-4 36-37 1.898775100182872E-4 5.296583174194328E-4 0.0 0.005271599291297184 1.9987106317714444E-4 38-39 1.898775100182872E-4 5.296583174194328E-4 0.0 0.008344616887645779 2.1486139291543026E-4 40-41 1.898775100182872E-4 5.796260832137189E-4 0.0 0.011777402397713235 2.2985172265371608E-4 42-43 1.898775100182872E-4 5.996131895314332E-4 0.0 0.015270149226733833 2.2985172265371608E-4 44-45 1.998710631771444E-4 6.845583913817196E-4 0.0 0.019242586607379576 2.2985172265371608E-4 46-47 2.0986461633600164E-4 7.645068166525775E-4 0.0 0.023314959519613897 2.2985172265371608E-4 48-49 2.1985816949485887E-4 7.745003698114346E-4 0.0 0.027422309867904216 2.3984527581257328E-4 50-51 2.448420523920019E-4 8.444552419234352E-4 0.0 0.0314896860035591 2.498388289714305E-4 52-53 2.5983238213028774E-4 8.59445571661721E-4 0.0 0.03543214272472828 2.5983238213028774E-4 54-55 2.5983238213028774E-4 8.59445571661721E-4 0.0 0.039739364136195734 2.848162650274308E-4 56-57 2.5983238213028774E-4 8.694391248205782E-4 0.0 0.04383172415474777 2.998065947657166E-4 58-59 2.5983238213028774E-4 8.744359014000068E-4 0.0 0.04793907450303809 2.998065947657166E-4 60-61 2.798194884480022E-4 8.994197842971498E-4 0.0 0.052281273350561555 2.998065947657166E-4 62-63 3.0980014792457384E-4 9.343972203531502E-4 0.0 0.05620873974199244 3.0980014792457384E-4 64-65 3.0980014792457384E-4 0.0010093488690445793 0.0 0.06020616100553533 3.0980014792457384E-4 66-67 3.347840308217169E-4 0.0010093488690445793 0.0 0.06403868864195708 3.4977436056000277E-4 68-69 3.3978080740114554E-4 0.0010193424222034366 0.0 0.06804610345865882 3.4977436056000277E-4 70-71 3.447775839805742E-4 0.0010293359753622937 0.0 0.07195857952035142 3.5976791371885995E-4 72-73 3.797550200365744E-4 0.0010293359753622937 0.0 0.07495164869142916 3.9974212635428887E-4 74-75 3.8974857319543164E-4 0.001039329528521151 0.0 0.07731012723691946 3.9974212635428887E-4 76-77 3.9974212635428887E-4 0.001064313411418294 0.0 0.07956367347424177 3.9974212635428887E-4 78-79 3.9974212635428887E-4 0.0010892972943154372 0.0 0.08161734864838693 3.9974212635428887E-4 80-81 3.9974212635428887E-4 0.0010892972943154372 0.0 0.08228191993345094 4.247260092514319E-4 82-83 3.9974212635428887E-4 0.0010892972943154372 0.0 0.0826966523895435 4.5970344530743215E-4 84-85 3.9974212635428887E-4 0.0010992908474742942 0.0 0.08303143642036523 4.5970344530743215E-4 86-87 3.9974212635428887E-4 0.0011192779537920088 0.0 0.08318133971774808 4.74693775045718E-4 88-89 3.9974212635428887E-4 0.0011892328259040094 0.0 0.08327627847275722 4.796905516251466E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14885 0.0 52.660725 1 GTATCAA 27850 0.0 40.357334 1 TCAACGC 32485 0.0 34.598927 4 ATCAACG 32685 0.0 34.225437 3 CAACGCA 33665 0.0 33.4124 5 TATCAAC 33775 0.0 33.14702 2 AACGCAG 34795 0.0 32.34835 6 TGGTATC 6690 0.0 29.34149 2 GTGGTAT 7250 0.0 29.08293 1 ACGCAGA 40230 0.0 27.94527 7 CGCAGAG 40990 0.0 27.43789 8 GCAGAGT 47580 0.0 23.683975 9 GAGTACT 28455 0.0 21.900568 12-13 CTTATAC 6405 0.0 21.211912 1 CAGAGTA 46675 0.0 20.261013 10-11 GTACTTT 31045 0.0 19.981255 14-15 GTACATG 33095 0.0 19.41983 1 TACATGG 32420 0.0 19.239096 2 GTGTAGC 6305 0.0 18.81982 1 ACATGGG 32755 0.0 18.692186 3 >>END_MODULE