##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139315_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10812726 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.316810580421624 31.0 18.0 33.0 18.0 33.0 2 28.354073154170372 30.0 27.0 33.0 18.0 33.0 3 28.569067134411803 31.0 27.0 33.0 18.0 33.0 4 31.330397071006885 33.0 31.0 33.0 28.0 33.0 5 31.916160180143287 33.0 32.0 33.0 30.0 34.0 6 35.94586970945162 38.0 36.0 38.0 31.0 38.0 7 36.24737008965177 38.0 37.0 38.0 33.0 38.0 8 36.60136167327277 38.0 37.0 38.0 34.0 38.0 9 36.8396656865253 38.0 38.0 38.0 35.0 38.0 10-11 36.89097194361533 38.0 38.0 38.0 35.0 38.0 12-13 36.95354714435564 38.0 38.0 38.0 35.0 38.0 14-15 36.94951324023193 38.0 38.0 38.0 35.0 38.0 16-17 36.964045560758684 38.0 38.0 38.0 35.0 38.0 18-19 36.97581359224307 38.0 38.0 38.0 35.0 38.0 20-21 36.9866506510043 38.0 38.0 38.0 35.5 38.0 22-23 37.001858715601 38.0 38.0 38.0 36.0 38.0 24-25 36.99414484662896 38.0 38.0 38.0 36.0 38.0 26-27 36.96378841909191 38.0 38.0 38.0 35.5 38.0 28-29 36.94066494833866 38.0 38.0 38.0 35.0 38.0 30-31 36.93812614905938 38.0 38.0 38.0 35.0 38.0 32-33 36.91301924985437 38.0 38.0 38.0 35.0 38.0 34-35 36.890912001748674 38.0 38.0 38.0 35.0 38.0 36-37 36.86307624817276 38.0 38.0 38.0 35.0 38.0 38-39 36.838914402734275 38.0 38.0 38.0 35.0 38.0 40-41 36.84095767816342 38.0 38.0 38.0 35.0 38.0 42-43 36.78420041047069 38.0 38.0 38.0 35.0 38.0 44-45 36.74762146857503 38.0 38.0 38.0 35.0 38.0 46-47 36.7061929883035 38.0 38.0 38.0 35.0 38.0 48-49 36.67066980487982 38.0 38.0 38.0 34.0 38.0 50-51 36.642694105208676 38.0 38.0 38.0 34.0 38.0 52-53 36.620151053080534 38.0 38.0 38.0 34.0 38.0 54-55 36.60504155747716 38.0 38.0 38.0 34.0 38.0 56-57 36.58534417406253 38.0 38.0 38.0 34.0 38.0 58-59 36.57218690241041 38.0 38.0 38.0 34.0 38.0 60-61 36.570647483254504 38.0 38.0 38.0 34.0 38.0 62-63 36.559256289025306 38.0 38.0 38.0 34.0 38.0 64-65 36.55170499070331 38.0 38.0 38.0 34.0 38.0 66-67 36.52212687742756 38.0 38.0 38.0 34.0 38.0 68-69 36.50708322037016 38.0 38.0 38.0 34.0 38.0 70-71 36.51200574658668 38.0 38.0 38.0 34.0 38.0 72-73 36.49611675186969 38.0 38.0 38.0 34.0 38.0 74-75 36.48975135627364 38.0 38.0 38.0 34.0 38.0 76-77 36.47508653023833 38.0 38.0 38.0 34.0 38.0 78-79 36.459726773631814 38.0 38.0 38.0 34.0 38.0 80-81 36.458188685559534 38.0 38.0 38.0 34.0 38.0 82-83 36.436738532613006 38.0 38.0 38.0 34.0 38.0 84-85 36.42819147145801 38.0 38.0 38.0 34.0 38.0 86-87 36.41232298457231 38.0 38.0 38.0 34.0 38.0 88-89 36.41343257550621 38.0 38.0 38.0 34.0 38.0 90-91 36.414480316013645 38.0 38.0 38.0 34.0 38.0 92-93 36.384624601143 38.0 38.0 38.0 34.0 38.0 94-95 36.37726550350969 38.0 38.0 38.0 34.0 38.0 96-97 36.373748741510504 38.0 38.0 38.0 34.0 38.0 98-99 36.401279486726025 38.0 38.0 38.0 34.0 38.0 100-101 35.85877316114996 38.0 36.5 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 29.0 20 110.0 21 508.0 22 1952.0 23 5662.0 24 13154.0 25 25174.0 26 42323.0 27 64896.0 28 93604.0 29 126254.0 30 163273.0 31 208258.0 32 266060.0 33 349351.0 34 491853.0 35 796138.0 36 1890333.0 37 6273789.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.85435957592932 18.968639360694056 13.74815194614198 22.428849117234638 2 14.596171215288356 20.295742257780322 40.99189233131405 24.116194195617275 3 19.645156543768987 25.64810736068174 29.511646552322894 25.19508954322638 4 12.868993443466522 18.25418492986875 39.17469100761455 29.70213061905018 5 13.836302297693424 38.00578494655494 34.512748719391226 13.645164036360406 6 29.886996119202504 37.70732745840411 18.747020871517506 13.658655550875883 7 26.604567617823665 33.10786752572848 22.50773764173808 17.77982721470978 8 24.200317292789997 36.87417955472098 20.898245271358952 18.02725788113007 9 25.372019969802253 17.66692321621763 21.258015786213395 35.70304102776672 10-11 24.182014785170733 26.9728651220793 28.478100712068354 20.367019380681615 12-13 25.085299959075996 24.38195736967323 28.75136471148577 21.781377959765 14-15 22.280325078196086 25.784109948637816 26.518263695222338 25.41730127794376 16-17 21.72092865388432 29.034301803264047 27.194127549333995 22.05064199351764 18-19 21.680541058748737 27.997948898362914 29.101676117567393 21.21983392532096 20-21 22.495556094023986 27.06362785501306 29.133470704440022 21.307345346522933 22-23 22.143849622277116 27.06665456902762 29.00164326263706 21.7878525460582 24-25 21.985869986131384 27.142074944174276 29.147203839239122 21.724851230455215 26-27 21.889274870187506 27.328621535795232 29.05196602610094 21.730137567916323 28-29 21.72197884828379 27.307615481238397 29.163710574428354 21.80669509604946 30-31 22.125880748624002 27.105305308670495 29.11455199709827 21.65426194560723 32-33 21.83623084264312 27.348583499496943 29.029923919220792 21.785261738639154 34-35 21.971582583527397 27.374920937512638 29.070550460804757 21.582946018155212 36-37 22.048790337541327 27.255211641755483 28.947397614365638 21.748600406337555 38-39 21.769906168632627 27.361121117274905 29.060165389365228 21.808807324727237 40-41 22.103796730403417 27.186731394493247 28.936202118121496 21.773269756981843 42-43 22.030825065521984 27.239621849144672 28.822478110334842 21.9070749749985 44-45 22.019825794416413 27.409615352428133 28.667138609763672 21.903420243391782 46-47 22.177070881842976 27.340985520769024 28.341543117718647 22.140400479669353 48-49 22.03329601469531 27.460299418683405 28.40211059023123 22.104293976390057 50-51 22.0237676651467 27.62078335056802 28.310933740926085 22.0445152433592 52-53 22.174639743283823 27.592492862993918 28.243656429435553 21.98921096428671 54-55 22.12446263748453 27.511401407310416 28.205057918393962 22.159078036811092 56-57 22.181939045250722 27.71189894080682 28.052082058503725 22.05407995543874 58-59 22.05710099764083 27.827332673748394 28.207286353912238 21.90827997469854 60-61 22.19371007163376 27.83063033384388 28.12593661365851 21.849722980863852 62-63 22.033121927644387 27.95911135938684 28.049980142241154 21.95778657072762 64-65 22.04287966077663 27.88330863335531 28.03311651155269 22.040695194315372 66-67 22.14393689339323 27.865697423186948 27.948500606014807 22.041865077405014 68-69 22.0882845028599 27.799472914866147 28.03616672370873 22.07607585856522 70-71 22.092097493606946 27.535543800986666 28.11920503984681 22.253153665559577 72-73 22.181606500168424 27.506493819015628 28.093795805651034 22.218103875164914 74-75 22.046326805051127 27.62284422155503 28.07156629433431 22.259262679059532 76-77 22.193690338491844 27.57642786893174 27.99251280476589 22.237368987810527 78-79 22.1566965128617 27.648834296442654 27.9179765928534 22.276492597842246 80-81 22.196777697369292 27.62505792814183 27.911650492877577 22.266513881611306 82-83 22.219089867263758 27.625637137200385 27.972059393770504 22.183213601765353 84-85 22.3241841646488 27.58199381092956 27.937540786122188 22.156281238299453 86-87 22.150720699381065 27.627734424690644 27.98666947401666 22.23487540191163 88-89 22.245563176512558 27.63944993349643 27.882679100566154 22.232307789424855 90-91 22.2810192355282 27.670025477487563 27.883764098790948 22.16519118819329 92-93 22.27595341243923 27.63355551977517 27.920350988703703 22.1701400790819 94-95 22.16071399897972 27.753363303248996 27.881377824800534 22.204544872970754 96-97 22.245627361513765 27.740892608482703 27.90003838167624 22.11344164832729 98-99 22.48161298009765 28.30286800094943 27.92462882787757 21.290890191075345 100-101 23.108748620028837 30.864262038882202 25.274343321464716 20.752646019624244 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2196.0 1 2028.0 2 2543.5 3 3566.0 4 4585.0 5 6415.0 6 8363.5 7 10543.5 8 13720.0 9 15928.5 10 15467.5 11 14541.5 12 15388.5 13 18674.5 14 25451.0 15 33624.0 16 41076.0 17 46718.0 18 47894.0 19 44743.5 20 40437.5 21 36674.0 22 35405.0 23 38694.5 24 46355.0 25 59089.5 26 76318.5 27 96439.5 28 118724.0 29 142663.5 30 166089.0 31 190398.5 32 216105.0 33 241835.0 34 267154.0 35 290998.0 36 317457.5 37 342174.5 38 360367.5 39 374916.5 40 391817.5 41 408836.5 42 419819.5 43 429692.5 44 447332.5 45 459130.5 46 457123.0 47 453923.5 48 447118.0 49 436135.5 50 424099.5 51 408654.0 52 388311.5 53 366920.0 54 345703.5 55 321527.0 56 294660.5 57 266202.0 58 237599.0 59 206480.0 60 172285.5 61 139917.0 62 109339.0 63 82881.0 64 61969.0 65 45574.0 66 33807.5 67 25809.0 68 19637.5 69 14318.5 70 10352.5 71 7383.0 72 5181.0 73 3534.5 74 2332.0 75 1464.5 76 865.5 77 497.5 78 320.5 79 216.5 80 151.0 81 104.5 82 67.0 83 44.0 84 33.0 85 25.0 86 18.5 87 12.0 88 11.5 89 12.0 90 8.0 91 4.5 92 2.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0011745419240254493 4 0.0 5 0.04962670838047686 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 9.248361606499601E-6 14-15 4.16176272292482E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.251092172378006E-6 28-29 9.254054282153987E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 1.8724981376835708E-5 40-41 0.0 42-43 0.0 44-45 1.901973430572359E-5 46-47 2.489693387556302E-4 48-49 0.0 50-51 4.364846246108557E-5 52-53 2.9260509387429773E-5 54-55 0.0016721424838004454 56-57 0.0021358720449864968 58-59 7.791875723850366E-4 60-61 0.0026320008350484625 62-63 0.004442231815455218 64-65 0.0021439674116953424 66-67 0.00715393574156705 68-69 0.004088189794185548 70-71 0.0016751091651581638 72-73 6.510835123465748E-4 74-75 6.973547499191488E-4 76-77 0.0 78-79 0.0 80-81 1.2326546729724276E-4 82-83 0.0 84-85 7.50897036291017E-4 86-87 8.937382014905909E-4 88-89 8.29151966032629E-5 90-91 3.679368049583164E-4 92-93 2.1370704621937893E-4 94-95 1.1347797803803953E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 97.0 20-21 397.0 22-23 918.0 24-25 1283.0 26-27 2699.0 28-29 5917.0 30-31 15745.0 32-33 20510.0 34-35 28056.0 36-37 43279.0 38-39 51459.0 40-41 51198.0 42-43 58811.0 44-45 70789.0 46-47 71787.0 48-49 65311.0 50-51 57899.0 52-53 55555.0 54-55 59264.0 56-57 61611.0 58-59 62327.0 60-61 62530.0 62-63 61212.0 64-65 67394.0 66-67 71823.0 68-69 71694.0 70-71 78039.0 72-73 63140.0 74-75 64883.0 76-77 68389.0 78-79 71129.0 80-81 71868.0 82-83 69519.0 84-85 69306.0 86-87 72795.0 88-89 75717.0 90-91 78642.0 92-93 77037.0 94-95 85418.0 96-97 150895.0 98-99 933017.0 100-101 7663367.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.26942246865725 #Duplication Level Percentage of deduplicated Percentage of total 1 88.6061147407985 73.78180001657869 2 7.824896857929578 13.031492844732135 3 1.942244254054332 4.851886719845167 4 0.7290900909273421 2.4284364319656233 5 0.35123261678983037 1.462346857612219 6 0.18030684604176758 0.9008428162225851 7 0.10577110469931136 0.6165249161528474 8 0.06571675560403216 0.43777570285293227 9 0.046034358280844005 0.3449928984985017 >10 0.144642550199021 1.8354870950013555 >50 0.003289064366034541 0.18072831460383243 >100 6.026514238734709E-4 0.0848309646908974 >500 3.873963788721321E-5 0.023274227166812104 >1k 1.936924769119126E-5 0.01958019407642013 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 9.248361606499601E-6 3 0.0 0.0 0.0 0.0 9.248361606499601E-6 4 0.0 3.6993446425998405E-5 0.0 9.248361606499601E-6 9.248361606499601E-6 5 0.0 3.6993446425998405E-5 0.0 9.248361606499601E-6 9.248361606499601E-6 6 1.3872542409749402E-4 4.6241808032498E-5 0.0 9.248361606499601E-6 9.248361606499601E-6 7 1.3872542409749402E-4 4.6241808032498E-5 0.0 1.8496723212999203E-5 9.248361606499601E-6 8 1.3872542409749402E-4 6.473853124549721E-5 0.0 1.8496723212999203E-5 9.248361606499601E-6 9 1.3872542409749402E-4 1.3872542409749402E-4 0.0 1.8496723212999203E-5 9.248361606499601E-6 10-11 1.525979665072434E-4 1.3872542409749402E-4 0.0 1.8496723212999203E-5 1.8496723212999203E-5 12-13 1.572221473104932E-4 1.3872542409749402E-4 0.0 1.8496723212999203E-5 1.8496723212999203E-5 14-15 1.942155937364916E-4 2.1271231694949081E-4 0.0 2.7745084819498802E-5 2.3120904016249E-5 16-17 3.144442946209864E-4 2.1271231694949081E-4 0.0 2.7745084819498802E-5 2.7745084819498802E-5 18-19 3.144442946209864E-4 2.2196067855599042E-4 0.0 2.7745084819498802E-5 3.6993446425998405E-5 20-21 3.144442946209864E-4 2.3120904016249002E-4 0.0 2.7745084819498802E-5 3.6993446425998405E-5 22-23 3.144442946209864E-4 2.4970576337548925E-4 0.0 3.2369265622748604E-5 3.6993446425998405E-5 24-25 3.144442946209864E-4 2.682024865884884E-4 0.0 5.5490169638997604E-5 3.6993446425998405E-5 26-27 3.144442946209864E-4 2.7745084819498804E-4 0.0 7.861107365524661E-5 3.6993446425998405E-5 28-29 3.144442946209864E-4 2.7745084819498804E-4 0.0 3.00571752211237E-4 3.6993446425998405E-5 30-31 3.144442946209864E-4 3.283168370307358E-4 0.0 8.462250869947134E-4 4.16176272292482E-5 32-33 3.144442946209864E-4 3.329410178339856E-4 0.0 0.002298217859215151 5.5490169638997604E-5 34-35 3.144442946209864E-4 3.838070066697334E-4 0.0 0.003986043852401328 6.473853124549721E-5 36-37 3.144442946209864E-4 4.346729955054812E-4 0.0 0.006792921599973956 6.473853124549721E-5 38-39 3.144442946209864E-4 4.4392135711198084E-4 0.0 0.010815958898801282 7.398689285199681E-5 40-41 3.144442946209864E-4 4.716664419314796E-4 0.0 0.014917607271283856 7.398689285199681E-5 42-43 3.375651986372354E-4 4.716664419314796E-4 0.0 0.019130235983044423 8.32352544584964E-5 44-45 3.5143774104698486E-4 5.271566115704772E-4 0.0 0.02388389384878522 9.2483616064996E-5 46-47 3.653102834567342E-4 5.826467812094749E-4 0.0 0.029099969794850994 1.0635615847474541E-4 48-49 3.69934464259984E-4 5.872709620127247E-4 0.0 0.03408946088155753 1.2947706249099442E-4 50-51 4.1617627229248205E-4 7.39868928519968E-4 0.0 0.03911132123388681 1.3872542409749402E-4 52-53 4.2542463389898163E-4 7.583656517329673E-4 0.0 0.043888100003643855 1.3872542409749402E-4 54-55 4.346729955054812E-4 7.583656517329673E-4 0.0 0.04903018905685763 1.4334960490074383E-4 56-57 4.531697187184804E-4 7.676140133394668E-4 0.0 0.05418152647167791 1.4797378570399362E-4 58-59 4.716664419314796E-4 7.722381941427166E-4 0.0 0.059161769196777944 1.4797378570399362E-4 60-61 4.947873459477286E-4 7.907349173557159E-4 0.0 0.063809070904044 1.664705089169928E-4 62-63 5.456533347834764E-4 8.184800021752147E-4 0.0 0.06788759837251032 1.757188705234924E-4 64-65 5.456533347834764E-4 9.294603414532099E-4 0.0 0.0719430049369604 1.757188705234924E-4 66-67 5.549016963899761E-4 9.340845222564596E-4 0.0 0.07600765986301697 1.84967232129992E-4 68-69 5.549016963899761E-4 9.47957064666209E-4 0.0 0.08035901399887503 1.988397745397414E-4 70-71 5.641500579964756E-4 9.664537878792083E-4 0.0 0.08439129965930886 2.034639553429912E-4 72-73 5.733984196029752E-4 9.94198872698707E-4 0.0 0.08773458238005846 2.1271231694949081E-4 74-75 5.826467812094749E-4 0.0010265681383214557 0.0 0.09057382939325384 2.2196067855599042E-4 76-77 5.918951428159745E-4 0.001063561584747454 0.0 0.09325585425913872 2.2196067855599042E-4 78-79 5.918951428159745E-4 0.001063561584747454 0.0 0.09541997087505963 2.2196067855599042E-4 80-81 5.918951428159745E-4 0.001063561584747454 0.0 0.09649740500221683 2.2658485935924023E-4 82-83 5.965193236192243E-4 0.001063561584747454 0.0 0.09684421856246056 2.3120904016249002E-4 84-85 6.196402276354733E-4 0.0010728099463539536 0.0 0.09718178376109779 2.3120904016249002E-4 86-87 6.335127700452226E-4 0.0010820583079604533 0.0 0.0973482542700148 2.4508158257223944E-4 88-89 6.47385312454972E-4 0.0011652935624189497 0.0 0.09738524771644079 2.497057633754892E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15535 0.0 51.636894 1 GTATCAA 28485 0.0 37.82698 1 TCAACGC 32565 0.0 32.925083 4 ATCAACG 32790 0.0 32.565113 3 CAACGCA 33565 0.0 31.944149 5 TATCAAC 33440 0.0 31.918947 2 AACGCAG 34615 0.0 31.025593 6 ACGCAGA 40490 0.0 26.523853 7 GTGGTAT 7455 0.0 26.354128 1 CGCAGAG 40950 0.0 26.247534 8 TGGTATC 7425 0.0 24.858732 2 GCAGAGT 48475 0.0 22.173006 9 CTTATAC 7175 0.0 22.102531 1 GAGTACT 28060 0.0 21.019852 12-13 CAGAGTA 46985 0.0 19.835066 10-11 TATACAC 10795 0.0 19.546738 3 GTACATG 34220 0.0 19.25808 1 TACATGG 33750 0.0 18.847548 2 GTACTTT 31330 0.0 18.65053 14-15 AGAGTAC 43560 0.0 17.952698 10-11 >>END_MODULE