##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139314_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11192305 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.89362396753841 31.0 18.0 33.0 18.0 33.0 2 27.912349154173334 29.0 25.0 32.0 18.0 33.0 3 28.189678622946747 29.0 27.0 31.0 18.0 33.0 4 31.21333773516715 33.0 31.0 33.0 27.0 33.0 5 31.857216989708554 33.0 32.0 33.0 30.0 34.0 6 35.910259950921635 38.0 36.0 38.0 31.0 38.0 7 36.24863421788452 38.0 37.0 38.0 33.0 38.0 8 36.60056047436163 38.0 37.0 38.0 34.0 38.0 9 36.846496409810136 38.0 38.0 38.0 35.0 38.0 10-11 36.892359840086556 38.0 38.0 38.0 35.0 38.0 12-13 36.95559721612304 38.0 38.0 38.0 35.0 38.0 14-15 36.9478310321243 38.0 38.0 38.0 35.0 38.0 16-17 36.96102331021179 38.0 38.0 38.0 35.0 38.0 18-19 36.97283361202183 38.0 38.0 38.0 35.0 38.0 20-21 36.98524924335241 38.0 38.0 38.0 35.5 38.0 22-23 36.996428091550825 38.0 38.0 38.0 36.0 38.0 24-25 36.98375072463104 38.0 38.0 38.0 36.0 38.0 26-27 36.955225548963774 38.0 38.0 38.0 35.5 38.0 28-29 36.93309235002006 38.0 38.0 38.0 35.0 38.0 30-31 36.9324066839526 38.0 38.0 38.0 35.0 38.0 32-33 36.90962481091497 38.0 38.0 38.0 35.0 38.0 34-35 36.88440308211004 38.0 38.0 38.0 35.0 38.0 36-37 36.85505262904161 38.0 38.0 38.0 35.0 38.0 38-39 36.83426716866582 38.0 38.0 38.0 35.0 38.0 40-41 36.83176352679324 38.0 38.0 38.0 35.0 38.0 42-43 36.776671938691564 38.0 38.0 38.0 35.0 38.0 44-45 36.73885190085488 38.0 38.0 38.0 35.0 38.0 46-47 36.6967351118798 38.0 38.0 38.0 35.0 38.0 48-49 36.65879663880638 38.0 38.0 38.0 34.0 38.0 50-51 36.62770820518873 38.0 38.0 38.0 34.0 38.0 52-53 36.605698564284666 38.0 38.0 38.0 34.0 38.0 54-55 36.591694810572434 38.0 38.0 38.0 34.0 38.0 56-57 36.57220108061212 38.0 38.0 38.0 34.0 38.0 58-59 36.55704821209914 38.0 38.0 38.0 34.0 38.0 60-61 36.55709774395728 38.0 38.0 38.0 34.0 38.0 62-63 36.5447561250929 38.0 38.0 38.0 34.0 38.0 64-65 36.535781123848224 38.0 38.0 38.0 34.0 38.0 66-67 36.50731794562185 38.0 38.0 38.0 34.0 38.0 68-69 36.49414805909999 38.0 38.0 38.0 34.0 38.0 70-71 36.495868087306135 38.0 38.0 38.0 34.0 38.0 72-73 36.480208467291526 38.0 38.0 38.0 34.0 38.0 74-75 36.47166984450553 38.0 38.0 38.0 34.0 38.0 76-77 36.45884576689578 38.0 38.0 38.0 34.0 38.0 78-79 36.4426725539519 38.0 38.0 38.0 34.0 38.0 80-81 36.43953041161447 38.0 38.0 38.0 34.0 38.0 82-83 36.417850784115984 38.0 38.0 38.0 34.0 38.0 84-85 36.409927076057514 38.0 38.0 38.0 34.0 38.0 86-87 36.39496197409461 38.0 38.0 38.0 34.0 38.0 88-89 36.39218508769214 38.0 38.0 38.0 34.0 38.0 90-91 36.39515557844863 38.0 38.0 38.0 34.0 38.0 92-93 36.36458154391478 38.0 38.0 38.0 34.0 38.0 94-95 36.35645649690376 38.0 37.5 38.0 34.0 38.0 96-97 36.351610463548084 38.0 37.0 38.0 34.0 38.0 98-99 36.38060704521153 38.0 37.0 38.0 34.0 38.0 100-101 35.83038741406769 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 38.0 20 111.0 21 496.0 22 2038.0 23 5974.0 24 13879.0 25 26309.0 26 44510.0 27 68015.0 28 97483.0 29 131163.0 30 170730.0 31 215021.0 32 276641.0 33 364471.0 34 514637.0 35 835862.0 36 2036825.0 37 6388093.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.13593937977923 18.8968402844633 13.769978570097937 22.19724176565953 2 14.567169139868867 20.2980708620789 41.00597687428997 24.12878312376226 3 19.80932753297236 25.647995023666976 29.480225339538503 25.062452103822157 4 12.943491086063148 18.290423643744518 39.28021975812847 29.485865512063867 5 13.826091495901895 38.057806456780135 34.520981442594184 13.595120604723787 6 29.725038765473244 37.83214449570486 18.822548170372414 13.620268568449484 7 26.47257200371148 33.16455368219504 22.651938094967928 17.71093621912555 8 24.067812662360435 37.06459929388986 20.99202085718715 17.875567186562556 9 25.287355911047815 17.810111500714108 21.430107560506972 35.472425027731106 10-11 24.145290000585224 27.089093801500226 28.51229036378119 20.253325834133364 12-13 25.020364437888354 24.4490522729679 28.86456364439675 21.666019644746996 14-15 22.228689961577608 25.884010540638137 26.62982676083199 25.25747273695227 16-17 21.596838184806437 29.156822477586164 27.2806807891672 21.9656585484402 18-19 21.56849281716322 28.099448683716176 29.228505656341568 21.103552842779035 20-21 22.402607294746304 27.201784610034707 29.219710230494854 21.175897864724135 22-23 22.09765245983434 27.135503660026057 29.106470780238762 21.660373099900845 24-25 21.850873865079894 27.257741887935328 29.25746478037528 21.6339194666095 26-27 21.790546586743588 27.422462897288547 29.171407669850204 21.61558284611766 28-29 21.688348991714225 27.434655329076314 29.25867224463334 21.618323434576123 30-31 22.043426944544766 27.315097407840238 29.08808712621218 21.553388521402812 32-33 21.928263049402307 27.394825859842115 29.0383515458021 21.638559544953477 34-35 21.95147972964421 27.443893040105877 29.035684447504135 21.568942782745783 36-37 21.893932110155173 27.397023004449363 29.04276172224407 21.666283163151398 38-39 21.743143877713607 27.49005298670304 29.103072641165095 21.66373049441826 40-41 22.032569809592182 27.329892400185518 28.95931836845147 21.678219421770827 42-43 21.96971553421978 27.34233489915438 28.867318558951794 21.820631007674045 44-45 21.97183892502602 27.506512120062066 28.721185234310553 21.80046372060136 46-47 22.089068493598923 27.44132243688701 28.414033902622833 22.055575166891234 48-49 21.961765385991498 27.57189868929968 28.475286708425823 21.991049216283002 50-51 21.944852807975042 27.722132883110394 28.392889291161943 21.940125017752617 52-53 22.137351868285588 27.65100702100115 28.29635884089818 21.91528226981508 54-55 22.075420469458038 27.561995684210867 28.307787108184606 22.05479673814649 56-57 22.053032570731474 27.75929398097332 28.204598773301083 21.98307467499412 58-59 22.00363195690833 27.864797172135486 28.30645574374881 21.825115127207376 60-61 22.11399649986591 27.854340833237163 28.225785800069126 21.805876866827802 62-63 22.013660341330905 27.998327182326253 28.146739519749715 21.841272956593127 64-65 22.024561832116547 27.894392610594938 28.152277048768536 21.92876850851998 66-67 22.094533879908447 27.889794517767996 28.04371616959571 21.971955432727846 68-69 22.028360299308595 27.847220246326724 28.156434810600377 21.9679846437643 70-71 22.049636713864352 27.540174925761878 28.219819989791134 22.190368370582636 72-73 22.107417388174415 27.58434608244993 28.170932223610336 22.13730430576532 74-75 21.931550934992273 27.751265310157848 28.157837698067144 22.159346056782734 76-77 22.114495879275857 27.650724762553303 28.099445300983223 22.135334057187624 78-79 22.077363666018364 27.73802618088907 27.9983134476401 22.186296705452463 80-81 22.111531930047665 27.721576324144685 27.98313416657766 22.183757579229983 82-83 22.130541040705587 27.717983048887618 28.085813502185207 22.065662408221588 84-85 22.276570937203545 27.65614437734992 28.02366142504507 22.043623260401464 86-87 22.11353078083591 27.674972255828827 28.088777944698613 22.12271901863665 88-89 22.161944189221455 27.726139069797473 28.003270834866278 22.10864590611479 90-91 22.19755234026304 27.75722144695523 28.005145733177145 22.040080479604583 92-93 22.211491149259132 27.716121903726453 27.99106885346767 22.081318093546745 94-95 22.100535033712838 27.820622652458805 27.94414668883236 22.134695624996002 96-97 22.156648522821516 27.82536188956183 27.99717318427967 22.020816403336983 98-99 22.381202640692216 28.408088772108663 28.031410542063988 21.179298045135127 100-101 23.001694305382728 30.9076900756909 25.43110836715872 20.659507251767646 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2029.0 1 1896.5 2 2484.5 3 3482.0 4 4390.5 5 6298.0 6 8271.5 7 10419.5 8 13786.0 9 16152.0 10 15951.0 11 15112.5 12 15883.5 13 19434.5 14 26496.0 15 34842.5 16 41965.5 17 47142.5 18 48501.0 19 45879.5 20 41612.0 21 37807.0 22 37032.5 23 41026.5 24 49670.0 25 63947.5 26 83669.0 27 105862.0 28 129456.0 29 154134.5 30 178166.0 31 203265.0 32 230394.0 33 257863.5 34 284812.5 35 308780.5 36 334513.0 37 359638.5 38 377263.0 39 391322.0 40 409582.5 41 427571.0 42 438214.5 43 447077.5 44 462366.5 45 472139.5 46 469094.0 47 463900.5 48 457008.0 49 446086.5 50 432371.0 51 416347.0 52 396294.0 53 374230.0 54 350682.5 55 325363.0 56 299486.0 57 271934.5 58 243324.5 59 211610.5 60 175877.5 61 141808.5 62 110361.5 63 83784.5 64 62409.0 65 45437.0 66 33610.0 67 25760.0 68 19723.5 69 14249.0 70 10059.5 71 7154.0 72 4793.5 73 3055.5 74 1977.5 75 1203.5 76 709.5 77 429.0 78 277.0 79 184.5 80 128.0 81 85.0 82 61.5 83 43.5 84 28.0 85 19.0 86 12.0 87 6.5 88 3.5 89 2.0 90 2.5 91 2.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0011436428867869488 4 0.0 5 0.04629073278471236 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 3.127148518558063E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 2.6811619816414584E-5 28-29 2.2349528114298348E-5 30-31 4.473112323115805E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 3.616067144581167E-5 40-41 0.0 42-43 0.0 44-45 9.1804038404567E-6 46-47 2.9578674884608505E-4 48-49 0.0 50-51 3.7447829322530383E-5 52-53 9.414115798237234E-6 54-55 0.001893352382982776 56-57 0.0025475815617760672 58-59 8.624852964225403E-4 60-61 0.0028114866832944646 62-63 0.0048093378997616535 64-65 0.0022417860519490696 66-67 0.00771344436134673 68-69 0.00456018638076545 70-71 0.0018486739461784064 72-73 7.703273528742727E-4 74-75 7.554411791696576E-4 76-77 0.0 78-79 0.0 80-81 2.0758927714196066E-4 82-83 0.0 84-85 7.96386955877842E-4 86-87 8.454383443616069E-4 88-89 9.117226672650429E-5 90-91 4.545871250319158E-4 92-93 2.1849317492869476E-4 94-95 3.3085307487679306E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 94.0 20-21 410.0 22-23 977.0 24-25 1175.0 26-27 2572.0 28-29 5555.0 30-31 15353.0 32-33 20170.0 34-35 27739.0 36-37 43710.0 38-39 51491.0 40-41 52039.0 42-43 60754.0 44-45 72534.0 46-47 74004.0 48-49 66924.0 50-51 60236.0 52-53 58102.0 54-55 61909.0 56-57 65322.0 58-59 65934.0 60-61 66431.0 62-63 64428.0 64-65 72201.0 66-67 76197.0 68-69 76535.0 70-71 81348.0 72-73 69143.0 74-75 70835.0 76-77 75341.0 78-79 78562.0 80-81 78709.0 82-83 76448.0 84-85 76026.0 86-87 79559.0 88-89 82944.0 90-91 85911.0 92-93 85176.0 94-95 92735.0 96-97 159687.0 98-99 966180.0 100-101 7870905.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.89526170732758 #Duplication Level Percentage of deduplicated Percentage of total 1 88.50637352729626 73.36758996311713 2 7.760494789537793 12.86616493114175 3 2.065197661618177 5.135853019115992 4 0.7402313062320237 2.454466714162422 5 0.35538567384422853 1.4729894220176143 6 0.1887766192830483 0.9389212355815699 7 0.11291200147381542 0.6551908938449061 8 0.0714457136448403 0.4738008904364657 9 0.0434754747862047 0.32435197742274846 >10 0.15099105610955374 1.919217913546059 >50 0.003638495847065449 0.1979444366266177 >100 9.82045996004591E-4 0.12704442266723406 >500 7.650845639069366E-5 0.04192150130168353 >1k 1.91258746078788E-5 0.024542679017905453 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7869420106046072E-5 0.0 0.0 0.0 3 0.0 1.7869420106046072E-5 0.0 0.0 0.0 4 0.0 5.360826031813822E-5 0.0 0.0 0.0 5 0.0 5.360826031813822E-5 0.0 0.0 0.0 6 4.467355026511518E-5 5.360826031813822E-5 0.0 0.0 0.0 7 4.467355026511518E-5 5.360826031813822E-5 0.0 8.934710053023036E-6 0.0 8 4.467355026511518E-5 6.254297037116126E-5 0.0 8.934710053023036E-6 8.934710053023036E-6 9 4.467355026511518E-5 1.3402065079534556E-4 0.0 8.934710053023036E-6 1.7869420106046072E-5 10-11 4.9140905291626704E-5 1.3402065079534556E-4 0.0 1.7869420106046072E-5 1.7869420106046072E-5 12-13 5.8075615344649735E-5 1.4295536084836858E-4 0.0 2.680413015906911E-5 2.233677513255759E-5 14-15 6.254297037116126E-5 1.8762891111348377E-4 0.0 3.5738840212092144E-5 3.5738840212092144E-5 16-17 1.1615123068929948E-4 1.9656362116650682E-4 0.0 4.467355026511518E-5 3.5738840212092144E-5 18-19 1.1615123068929948E-4 2.0549833121952986E-4 0.0 4.467355026511518E-5 4.020619523860366E-5 20-21 1.1615123068929948E-4 2.1443304127255288E-4 0.0 5.360826031813822E-5 4.467355026511518E-5 22-23 1.2061858571581099E-4 2.4123717143162198E-4 0.0 6.254297037116126E-5 5.8075615344649735E-5 24-25 1.2955329576883404E-4 2.5463923651115655E-4 0.0 8.487974550371884E-5 7.147768042418429E-5 26-27 1.3402065079534556E-4 2.591065915376681E-4 0.0 1.5635742592790314E-4 7.147768042418429E-5 28-29 1.3402065079534556E-4 2.591065915376681E-4 0.0 3.0824749682929476E-4 7.147768042418429E-5 30-31 1.3402065079534556E-4 3.0378014180278324E-4 0.0 8.979383603288152E-4 7.147768042418429E-5 32-33 1.3402065079534556E-4 3.0378014180278324E-4 0.0 0.002385567584157151 7.147768042418429E-5 34-35 1.429553608483686E-4 3.305842719618523E-4 0.0 0.0041501728196292 7.147768042418429E-5 36-37 1.5189007090139162E-4 3.5738840212092146E-4 0.0 0.007045018876808665 8.041239047720733E-5 38-39 1.697594910074377E-4 3.7525782222696754E-4 0.0 0.011333679702259722 8.041239047720733E-5 40-41 1.697594910074377E-4 4.199313724920827E-4 0.0 0.016002065704964256 8.041239047720733E-5 42-43 1.697594910074377E-4 4.333334375716173E-4 0.0 0.020397943051051592 8.041239047720733E-5 44-45 1.742268460339492E-4 4.91409052916267E-4 0.0 0.0252092844146045 8.041239047720733E-5 46-47 1.8316155608697225E-4 5.360826031813822E-4 0.0 0.030820282327902966 1.0274916560976493E-4 48-49 1.920962661399953E-4 5.360826031813822E-4 0.0 0.03654743147189073 1.0721652063627644E-4 50-51 2.0103097619301834E-4 5.941582185260319E-4 0.0 0.04254262191746919 1.0721652063627644E-4 52-53 2.0549833121952983E-4 6.03092928579055E-4 0.0 0.047849839688964876 1.0721652063627644E-4 54-55 2.0996568624604136E-4 6.164949936585895E-4 0.0 0.05319726365569916 1.0721652063627644E-4 56-57 2.1443304127255288E-4 6.254297037116126E-4 0.0 0.05795052940390742 1.1168387566278796E-4 58-59 2.1443304127255288E-4 6.432991238176587E-4 0.0 0.06251616624100219 1.1615123068929948E-4 60-61 2.4123717143162198E-4 6.656358989502163E-4 0.0 0.06710413985322952 1.1615123068929948E-4 62-63 2.5017188148464503E-4 6.790379640297508E-4 0.0 0.07122750854269966 1.1615123068929948E-4 64-65 2.5017188148464503E-4 7.594503545069581E-4 0.0 0.07519898716126838 1.1615123068929948E-4 66-67 2.591065915376681E-4 7.683850645599812E-4 0.0 0.0793938335311627 1.1615123068929948E-4 68-69 2.591065915376681E-4 7.862544846660273E-4 0.0 0.08359314725608352 1.1615123068929948E-4 70-71 2.680413015906911E-4 7.907218396925388E-4 0.0 0.08755122380957274 1.2508594074232251E-4 72-73 3.0378014180278324E-4 8.085912597985849E-4 0.0 0.09106256486041078 1.3402065079534556E-4 74-75 3.0378014180278324E-4 8.309280349311425E-4 0.0 0.09394400885251072 1.3402065079534556E-4 76-77 3.0378014180278324E-4 9.068730703818383E-4 0.0 0.0962625661112702 1.3402065079534556E-4 78-79 3.2164956190882933E-4 9.292098455143959E-4 0.0 0.09844710271923433 1.3402065079534556E-4 80-81 3.2164956190882933E-4 9.292098455143959E-4 0.0 0.09941651875998733 1.3848800582185708E-4 82-83 3.2164956190882933E-4 9.336772005409074E-4 0.0 0.09993026458803615 1.4295536084836858E-4 84-85 3.2164956190882933E-4 9.426119105939304E-4 0.0 0.10032339183036917 1.4295536084836858E-4 86-87 3.2611691693534085E-4 9.649486857264879E-4 0.0 0.10044847777111149 1.4295536084836858E-4 88-89 3.395189820148754E-4 0.0010542957862567184 0.0 0.10048868396635009 1.5189007090139162E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15815 0.0 50.273415 1 GTATCAA 28945 0.0 38.65647 1 TCAACGC 33000 0.0 33.63915 4 ATCAACG 33350 0.0 33.260323 3 TATCAAC 34030 0.0 32.5957 2 CAACGCA 34205 0.0 32.544125 5 AACGCAG 35170 0.0 31.69828 6 ACGCAGA 41030 0.0 27.117468 7 CGCAGAG 41685 0.0 26.69137 8 GTGGTAT 7915 0.0 25.682688 1 TGGTATC 7430 0.0 25.58258 2 GCAGAGT 49215 0.0 22.60753 9 GAGTACT 28770 0.0 21.178576 12-13 CAGAGTA 47785 0.0 19.842083 10-11 CTTATAC 6805 0.0 19.785301 1 GTACATG 34450 0.0 19.69448 1 GTACTTT 31830 0.0 19.004778 14-15 TACATGG 34075 0.0 18.968603 2 ACATGGG 34745 0.0 18.400208 3 AGAGTAC 44200 0.0 18.11334 10-11 >>END_MODULE