##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139310_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12199322 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.896945748296503 31.0 31.0 34.0 30.0 34.0 2 32.04008034216984 33.0 31.0 34.0 30.0 34.0 3 32.10718275982878 33.0 31.0 34.0 30.0 34.0 4 35.80164217322897 37.0 35.0 37.0 35.0 37.0 5 35.672277934790145 37.0 35.0 37.0 33.0 37.0 6 35.67028192222486 37.0 35.0 37.0 33.0 37.0 7 35.55253283748064 37.0 35.0 37.0 33.0 37.0 8 35.54390670235608 37.0 35.0 37.0 33.0 37.0 9 37.15625524106996 39.0 37.0 39.0 33.0 39.0 10-11 37.0298569871342 39.0 37.0 39.0 33.0 39.0 12-13 36.99491988161309 39.0 37.0 39.0 33.0 39.0 14-15 38.16914411309088 40.0 37.0 41.0 33.0 41.0 16-17 38.16538423200896 40.0 37.0 41.0 33.0 41.0 18-19 38.188913203537055 40.0 37.5 41.0 33.0 41.0 20-21 38.17275386057662 40.0 37.5 41.0 33.0 41.0 22-23 38.084805621134585 40.0 37.0 41.0 33.0 41.0 24-25 37.99507388612402 40.0 37.0 41.0 33.0 41.0 26-27 37.839247785110416 40.0 37.0 41.0 32.5 41.0 28-29 37.70889156377487 40.0 37.0 41.0 32.0 41.0 30-31 37.57549770730415 39.0 37.0 41.0 32.0 41.0 32-33 37.72821928682031 40.0 37.0 41.0 33.0 41.0 34-35 37.696811757311025 40.0 37.0 41.0 32.5 41.0 36-37 37.57039959482777 40.0 36.5 41.0 32.0 41.0 38-39 37.413319355479516 39.0 36.0 41.0 31.0 41.0 40-41 37.35977689093777 39.0 36.0 41.0 31.0 41.0 42-43 37.25336163807217 39.0 36.0 40.5 31.0 41.0 44-45 37.32012221759261 39.0 36.0 40.5 31.5 41.0 46-47 37.47318241606037 39.5 36.0 41.0 32.0 41.0 48-49 37.40786614754498 39.0 36.0 41.0 31.0 41.0 50-51 37.274063133036464 39.0 36.0 41.0 31.0 41.0 52-53 37.1406706528976 39.0 36.0 41.0 31.0 41.0 54-55 37.01711042671468 39.0 35.0 40.5 31.0 41.0 56-57 36.87721046298351 39.0 35.0 40.0 31.0 41.0 58-59 36.74497793998928 38.5 35.0 40.0 31.0 41.0 60-61 36.51444796322673 38.0 35.0 40.0 30.0 41.0 62-63 36.2564903685513 38.0 34.5 40.0 30.0 41.0 64-65 36.036204803471 38.0 34.0 40.0 29.5 41.0 66-67 35.77401702497268 37.0 34.0 40.0 29.0 41.0 68-69 35.48590922687994 37.0 34.0 39.0 29.0 41.0 70-71 35.17619111437151 36.0 34.0 39.0 29.0 40.5 72-73 34.84436224568867 36.0 33.5 39.0 29.0 40.0 74-75 34.50145055100187 35.0 33.0 38.0 28.0 40.0 76-77 33.37615047177012 34.5 31.5 37.0 26.5 39.0 78-79 33.754736622796784 35.0 32.0 37.0 28.0 39.0 80-81 33.62687698412682 35.0 32.0 36.0 28.0 39.0 82-83 33.38237104477152 35.0 32.0 36.0 28.0 37.5 84-85 33.1630768079188 35.0 32.0 35.5 28.0 37.0 86-87 32.93908269741044 34.0 32.0 35.0 27.0 37.0 88-89 32.705098594001406 34.0 32.0 35.0 27.0 36.0 90-91 32.56237267044526 34.0 32.0 35.0 27.0 36.0 92-93 32.4837304832796 34.0 32.0 35.0 27.0 36.0 94-95 32.441169026163564 34.0 31.5 35.0 27.0 35.0 96-97 32.33984568128057 34.0 31.0 35.0 27.0 35.0 98-99 32.49018817043253 34.0 31.0 35.0 27.0 35.0 100-101 31.72016781121674 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 13.0 20 72.0 21 522.0 22 2405.0 23 8242.0 24 22095.0 25 47088.0 26 84719.0 27 134325.0 28 193916.0 29 259377.0 30 332840.0 31 414573.0 32 514240.0 33 646254.0 34 835785.0 35 1113309.0 36 1594552.0 37 2354023.0 38 2476812.0 39 1122183.0 40 41976.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.037695865393175 22.45896124391175 15.190262212932817 24.313080677762255 2 13.889856190170777 22.938148132846205 40.975177409613075 22.196818267369945 3 16.735585797309064 27.985022446329396 31.67392417381884 23.6054675825427 4 11.870118683644879 19.779443480547528 39.98264821602381 28.36778961978379 5 12.388376993409961 38.664238881472265 36.57114715063673 12.37623697448104 6 28.42373535184988 40.075612398787406 19.178172360726276 12.322479888636433 7 24.97980625480662 33.16357253296536 24.779024604810004 17.07759660741802 8 23.51433956739563 37.858726903019694 21.77298049842442 16.853953031160255 9 25.073122916175176 16.461800090201734 21.757569805928558 36.707507187694524 10-11 23.45838153956425 27.283450670455295 30.026000625280652 19.23216716469981 12-13 24.352345154919266 24.84547911760998 29.900395284262522 20.90178044320824 14-15 21.58456019113193 26.233449694991247 27.15458695163551 25.027403162241313 16-17 21.278944846279163 29.2514616795917 27.847715635344322 21.621877838784812 18-19 21.32878537268571 28.60832584520736 29.248070834146905 20.814817947960023 20-21 22.10970051484252 27.827359805557766 28.997499668916504 21.065440010683208 22-23 21.83527320475263 27.78734632345394 28.878790447647244 21.498590024146186 24-25 21.62697342916484 27.94021239201479 28.873837683561277 21.558976495259095 26-27 21.701553127140052 28.028699644859817 28.744849515788033 21.52489771221209 28-29 21.662353213550958 28.08465731287802 28.77275223563336 21.480237237937665 30-31 21.87035537431728 27.941599689825498 28.68850768294946 21.499537252907764 32-33 21.667100177379737 28.089447454218636 28.69358540320285 21.54986696519878 34-35 21.81134277641506 28.0955343005417 28.668543155490973 21.424579767552263 36-37 21.815454461981762 28.073207487270135 28.60524081679009 21.506097233958013 38-39 21.67387469995773 28.142672016645864 28.659934991084903 21.523518292311504 40-41 21.860622024743893 27.99719627246183 28.608990972118566 21.53319073067571 42-43 21.755254945928144 28.144502492819807 28.388620392001073 21.711622169250976 44-45 21.826741718920808 28.20855620696005 28.238529051614165 21.726173022504973 46-47 21.937463801208274 28.184110499140917 28.026244943199934 21.852180756450874 48-49 21.862536426939467 28.271579749034387 28.01375009878196 21.852133725244194 50-51 21.88236671703391 28.34882925963862 27.90753821100534 21.861265812322134 52-53 21.97749032968335 28.245677681251045 27.88332691253102 21.89350507653458 54-55 21.967505247175385 28.194910913787286 27.900023234774775 21.93756060426255 56-57 21.98256911390176 28.257468008541366 27.862628224589326 21.897334652967547 58-59 21.946026515278305 28.28190755074469 27.878376802681025 21.893689131295982 60-61 22.021663940871857 28.283810657887937 27.867139165673766 21.827386235566436 62-63 21.996626459753312 28.31305064821658 27.820224184201297 21.870098707828806 64-65 21.94552121978125 28.24729939354385 27.794847620103198 22.0123317665717 66-67 22.012831305354542 28.260885784323612 27.728045870662747 21.9982370396591 68-69 21.95928765707472 28.235608538261232 27.797633754639655 22.007470050024388 70-71 21.94212936587747 28.08560515105866 27.853722759437012 22.11854272362686 72-73 22.003179631141165 28.13092664765935 27.801206586132825 22.064687135066656 74-75 21.898240499868525 28.219301536037417 27.7915523671522 22.09090559694186 76-77 21.969610750360324 28.157185391296412 27.768624774519697 22.104579083823566 78-79 21.924590613904858 28.141825892777593 27.755003277839833 22.17858021547772 80-81 21.93479964834001 28.173823168180554 27.79125882965402 22.10011835382541 82-83 21.96555870750079 28.151203320777313 27.83125553714966 22.051982434572242 84-85 21.998207574837846 28.15941398337164 27.782622751795493 22.05975568999502 86-87 21.88762617405761 28.202491122324798 27.85942267371472 22.050460029902872 88-89 21.908849608648016 28.1576562557444 27.799140712494015 22.134353423113566 90-91 21.925678868279878 28.158094443762128 27.860531132927573 22.05569555503042 92-93 21.879484374280274 28.138108241680243 27.896164915611628 22.08624246842786 94-95 21.680257672414765 28.208899104102986 27.968071698303742 22.142771525178503 96-97 21.633742437527864 28.28876161424797 28.039449894880438 22.03804605334373 98-99 21.78068876027175 28.89310649307641 28.141332839886836 21.184871906765 100-101 25.208493677975376 36.26222310279098 29.021926650903257 9.507356568330387 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2714.0 1 2481.0 2 3356.5 3 4676.0 4 6036.0 5 9087.0 6 11596.5 7 13263.0 8 14129.5 9 13670.0 10 12759.0 11 12073.0 12 13498.0 13 17923.0 14 27946.0 15 41810.0 16 52887.0 17 58684.5 18 60062.5 19 58840.0 20 56707.5 21 55704.0 22 57994.5 23 66063.5 24 80501.0 25 101654.0 26 127992.5 27 155458.5 28 184605.0 29 215227.0 30 243716.0 31 272684.5 32 303074.5 33 332672.5 34 361161.0 35 388003.5 36 415641.0 37 441486.5 38 462698.5 39 478473.5 40 490677.0 41 502841.5 42 510744.5 43 515727.5 44 521843.0 45 525934.0 46 525535.0 47 521026.5 48 514467.0 49 501535.0 50 483212.5 51 463480.0 52 438333.5 53 409660.5 54 379775.5 55 347428.5 56 315010.5 57 281258.0 58 245635.0 59 209496.5 60 173644.0 61 140740.0 62 111518.5 63 86282.0 64 64594.5 65 47791.5 66 35640.0 67 26861.0 68 20305.0 69 15107.0 70 11182.0 71 8254.0 72 6034.5 73 4362.5 74 3130.5 75 2158.5 76 1497.5 77 1045.0 78 718.0 79 491.5 80 318.5 81 209.5 82 162.5 83 116.5 84 76.0 85 52.5 86 38.0 87 31.0 88 20.0 89 13.0 90 9.0 91 5.5 92 4.5 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0035575747570233823 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 6.557741487600704E-5 20-21 0.0019018238367631813 22-23 3.976250552319648E-4 24-25 4.100151111069199E-5 26-27 3.6504851597319E-4 28-29 0.0035623247386503327 30-31 4.5197966683181733E-4 32-33 7.824601428187434E-5 34-35 0.0023254889867237293 36-37 0.05572097973504593 38-39 0.03111107380065432 40-41 0.04106831824142768 42-43 9.161653948297478E-4 44-45 0.0023970852128693 46-47 0.0015918671507269362 48-49 6.556281612750866E-4 50-51 4.415338727788142E-6 52-53 0.0010340928373782485 54-55 0.0023850739730692746 56-57 0.0013233153661061099 58-59 0.0038942315671928046 60-61 0.0016046141447155454 62-63 1.4112455667484577E-4 64-65 8.181787132541432E-4 66-67 4.4283195850857083E-4 68-69 1.8522281646792666E-4 70-71 0.0012149600700409663 72-73 0.00172171999827828 74-75 6.439367800108637E-4 76-77 0.0010995471972156587 78-79 1.511003203483102E-4 80-81 0.0021000975249319135 82-83 0.0024714909489434566 84-85 0.003601089820728473 86-87 0.0038870116144572434 88-89 0.06644756390442363 90-91 7.194001560925683E-4 92-93 7.059396171018814E-5 94-95 6.03244478035778E-5 96-97 0.008289518939490882 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 288.0 20-21 1136.0 22-23 2277.0 24-25 4159.0 26-27 6116.0 28-29 10685.0 30-31 25933.0 32-33 33189.0 34-35 47295.0 36-37 74866.0 38-39 88610.0 40-41 92066.0 42-43 102980.0 44-45 119885.0 46-47 121063.0 48-49 116905.0 50-51 108441.0 52-53 105034.0 54-55 113543.0 56-57 119515.0 58-59 123522.0 60-61 123382.0 62-63 117561.0 64-65 121089.0 66-67 128875.0 68-69 132876.0 70-71 135635.0 72-73 128989.0 74-75 130005.0 76-77 131776.0 78-79 142932.0 80-81 146610.0 82-83 142526.0 84-85 144903.0 86-87 153943.0 88-89 168228.0 90-91 184361.0 92-93 202042.0 94-95 262234.0 96-97 337559.0 98-99 1049063.0 100-101 6697225.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.42413186492848 #Duplication Level Percentage of deduplicated Percentage of total 1 90.06475655488543 76.93703640327215 2 6.9366832345166065 11.851202866611704 3 1.6755454696639966 4.293960514387823 4 0.6044582908710574 2.06541298984874 5 0.2730012325030061 1.1660446642312396 6 0.15478617023309316 0.7933484530115411 7 0.08663114619826186 0.5180273319515153 8 0.05708865227332248 0.3901398847829879 9 0.03251334955088526 0.2499682193464802 >10 0.11084092793395843 1.4522748244236703 >50 0.002989245594201447 0.17199490909936244 >100 7.057257761664068E-4 0.11058893903282731 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.639435371900176E-5 0.0 0.0 0.0 3 0.0 1.639435371900176E-5 0.0 0.0 0.0 4 0.0 4.0985884297504405E-5 0.0 0.0 0.0 5 0.0 4.0985884297504405E-5 0.0 0.0 0.0 6 0.0 4.0985884297504405E-5 0.0 0.0 0.0 7 0.0 4.0985884297504405E-5 0.0 0.0 0.0 8 0.0 4.918306115700528E-5 0.0 0.0 0.0 9 8.19717685950088E-6 7.377459173550793E-5 0.0 2.459153057850264E-5 0.0 10-11 3.278870743800352E-5 7.377459173550793E-5 0.0 3.688729586775396E-5 0.0 12-13 3.278870743800352E-5 7.377459173550793E-5 0.0 4.0985884297504405E-5 0.0 14-15 3.278870743800352E-5 9.016894545450968E-5 0.0 4.0985884297504405E-5 1.639435371900176E-5 16-17 3.278870743800352E-5 9.016894545450968E-5 0.0 5.738023801650616E-5 1.639435371900176E-5 18-19 3.278870743800352E-5 1.02464710743761E-4 0.0 6.557741487600704E-5 2.459153057850264E-5 20-21 4.0985884297504405E-5 1.2705624132226364E-4 0.0 6.557741487600704E-5 2.459153057850264E-5 22-23 4.0985884297504405E-5 1.4754918347101585E-4 0.0 7.377459173550793E-5 3.278870743800352E-5 24-25 4.0985884297504405E-5 1.516477719007663E-4 0.0 9.426753388426014E-5 4.0985884297504405E-5 26-27 4.0985884297504405E-5 1.5574636033051674E-4 0.0 1.3115482975201408E-4 4.0985884297504405E-5 28-29 5.7380238016506165E-5 1.5574636033051674E-4 0.0 3.1968989752053436E-4 4.0985884297504405E-5 30-31 5.7380238016506165E-5 1.7214071404951848E-4 0.0 0.0010902245223136172 5.3281649586755724E-5 32-33 6.557741487600704E-5 1.7214071404951848E-4 0.0 0.0028403217818170554 6.557741487600704E-5 34-35 6.557741487600704E-5 2.2132377520652375E-4 0.0 0.005360953666113576 6.557741487600704E-5 36-37 7.377459173550793E-5 2.7870401322302994E-4 0.0 0.00950462656859127 6.557741487600704E-5 38-39 7.377459173550793E-5 3.032955438015326E-4 0.0 0.015947607580158965 6.557741487600704E-5 40-41 7.377459173550793E-5 3.360842512395361E-4 0.0 0.02316932039337924 6.557741487600704E-5 42-43 8.197176859500881E-5 3.606757818180388E-4 0.0 0.030046751778500476 6.557741487600704E-5 44-45 8.197176859500881E-5 4.303517851237962E-4 0.0 0.037961126036348575 6.967600330575748E-5 46-47 8.197176859500881E-5 4.754362578510511E-4 0.0 0.046678823626427765 8.197176859500881E-5 48-49 8.197176859500881E-5 4.795348462808015E-4 0.0 0.05526946497518469 9.016894545450968E-5 50-51 8.197176859500881E-5 5.246193190080563E-4 0.0 0.0642412750479084 9.016894545450968E-5 52-53 8.197176859500881E-5 5.246193190080563E-4 0.0 0.07234008578509526 9.836612231401056E-5 54-55 8.607035702475925E-5 5.246193190080563E-4 0.0 0.08104138902145547 1.0656329917351145E-4 56-57 9.016894545450968E-5 5.328164958675573E-4 0.0 0.08947628400988186 1.0656329917351145E-4 58-59 9.016894545450968E-5 5.410136727270581E-4 0.0 0.09819398159996104 1.1066188760326189E-4 60-61 9.016894545450968E-5 5.410136727270581E-4 0.0 0.10593621514375963 1.229576528925132E-4 62-63 1.1476047603301233E-4 5.49210849586559E-4 0.0 0.11322350537185591 1.3115482975201408E-4 64-65 1.1476047603301233E-4 6.229854413220669E-4 0.0 0.12089606291234874 1.3525341818176453E-4 66-67 1.1476047603301233E-4 6.393797950410686E-4 0.0 0.1288719159966431 1.434505950412654E-4 68-69 1.1476047603301233E-4 6.557741487600705E-4 0.0 0.13752403617184628 1.4754918347101585E-4 70-71 1.1476047603301233E-4 6.721685024790722E-4 0.0 0.14624173376192545 1.4754918347101585E-4 72-73 1.1476047603301233E-4 6.762670909088227E-4 0.0 0.15405364330902982 1.7214071404951848E-4 74-75 1.1885906446276276E-4 6.967600330575747E-4 0.0 0.16087369445613453 1.7214071404951848E-4 76-77 1.229576528925132E-4 7.131543867765766E-4 0.0 0.1674437317090245 1.7623930247926892E-4 78-79 1.229576528925132E-4 7.213515636360774E-4 0.0 0.17332110751728663 1.8033789090901936E-4 80-81 1.3115482975201408E-4 7.213515636360774E-4 0.0 0.17764101972224355 1.8853506776852024E-4 82-83 1.3115482975201408E-4 7.213515636360774E-4 0.0 0.1806411864528209 1.9673224462802113E-4 84-85 1.3525341818176453E-4 7.213515636360774E-4 0.0 0.1835265927073652 1.9673224462802113E-4 86-87 1.3935200661151497E-4 7.213515636360774E-4 0.0 0.18405121202637326 1.9673224462802113E-4 88-89 1.3935200661151497E-4 7.623374479335818E-4 0.0 0.18411678944124926 2.0083083305777157E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12505 0.0 45.170574 1 GTATCAA 21830 0.0 32.86967 1 ATCAACG 26410 0.0 26.379416 3 TCAACGC 26355 0.0 26.33949 4 CAACGCA 27030 0.0 25.681736 5 AACGCAG 27815 0.0 24.971941 6 TATCAAC 28765 0.0 24.582493 2 ACGCAGA 32115 0.0 21.628351 7 CGCAGAG 32560 0.0 21.384003 8 GTACATG 31360 0.0 18.637287 1 TACATGG 30880 0.0 18.602755 2 AGAGTAC 34850 0.0 17.991745 10-11 ACATGGG 30765 0.0 17.92634 3 GCAGAGT 39890 0.0 17.412746 9 GAGTACT 21665 0.0 16.877584 12-13 CAGAGTA 38070 0.0 16.250822 10-11 CATGGGG 21555 0.0 15.560555 4 AGTACTT 24970 0.0 15.10313 12-13 TATACTG 7265 0.0 14.642715 5 GTACTTT 25085 0.0 14.552384 14-15 >>END_MODULE