##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139307_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21997728 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.347814874336112 31.0 31.0 34.0 30.0 34.0 2 31.5087878166327 31.0 31.0 34.0 30.0 34.0 3 31.54925113175324 31.0 31.0 34.0 30.0 34.0 4 35.36812833579904 37.0 35.0 37.0 33.0 37.0 5 35.1394059422864 37.0 35.0 37.0 32.0 37.0 6 35.16864823494499 37.0 35.0 37.0 32.0 37.0 7 35.05064591215966 37.0 35.0 37.0 32.0 37.0 8 35.02229366596405 37.0 35.0 37.0 32.0 37.0 9 36.55165869857105 39.0 35.0 39.0 32.0 39.0 10-11 36.45049488747202 38.0 35.0 39.0 32.0 39.0 12-13 36.379805996328344 38.0 35.0 39.0 32.0 39.0 14-15 37.43092341172688 39.0 36.0 41.0 32.0 41.0 16-17 37.416384523892646 39.0 36.0 41.0 32.0 41.0 18-19 37.42839555975963 39.0 36.0 41.0 32.0 41.0 20-21 37.40422073604073 39.0 36.0 41.0 32.0 41.0 22-23 37.31091893111646 39.0 36.0 41.0 31.0 41.0 24-25 37.20769118875073 39.0 36.0 41.0 31.0 41.0 26-27 36.98494435365103 39.0 36.0 40.0 31.0 41.0 28-29 36.80777101688926 39.0 35.5 40.0 30.0 41.0 30-31 36.64724198837686 38.5 35.0 40.0 30.0 41.0 32-33 36.4487092027218 38.0 35.0 40.0 30.0 41.0 34-35 36.28972940677964 38.0 35.0 40.0 30.0 41.0 36-37 36.14181424738451 38.0 35.0 40.0 30.0 41.0 38-39 35.982710921490366 38.0 34.0 40.0 29.0 41.0 40-41 35.83564121636407 38.0 34.0 40.0 29.0 41.0 42-43 35.68406814429919 38.0 34.0 40.0 28.0 41.0 44-45 35.518786925258695 38.0 33.5 40.0 27.5 41.0 46-47 35.81768204210634 38.0 34.0 40.0 28.5 41.0 48-49 36.20131124346312 38.0 34.5 40.0 29.0 41.0 50-51 36.21572346003872 38.0 34.5 40.0 29.0 41.0 52-53 36.12355344502282 38.0 34.0 40.0 29.0 41.0 54-55 36.01199915579332 38.0 34.0 40.0 28.5 41.0 56-57 35.86758345543098 38.0 34.0 40.0 28.0 41.0 58-59 35.69612634891416 38.0 34.0 40.0 28.0 41.0 60-61 35.508200351501664 37.5 34.0 40.0 28.0 41.0 62-63 35.289504066071245 37.0 33.0 40.0 28.0 41.0 64-65 34.989772825753406 37.0 33.0 39.5 27.5 41.0 66-67 34.72258483123456 36.0 32.5 39.0 27.0 41.0 68-69 34.461886276345425 36.0 32.0 39.0 26.5 40.5 70-71 34.19432183925065 35.5 32.0 39.0 26.0 40.0 72-73 33.904148590779855 35.0 32.0 38.0 26.0 40.0 74-75 33.58655267406999 35.0 31.5 37.5 26.0 39.5 76-77 31.864156996444898 33.5 29.5 35.5 25.0 38.5 78-79 32.93677893361807 34.0 31.0 36.0 26.0 39.0 80-81 33.00903590194938 34.0 31.0 36.0 26.0 39.0 82-83 32.7920855244085 34.0 31.0 36.0 26.0 37.5 84-85 32.576583732990485 34.0 31.0 35.0 26.0 37.0 86-87 32.37125786917193 34.0 31.0 35.0 26.0 37.0 88-89 32.19563114172856 34.0 31.0 35.0 26.0 36.0 90-91 32.09679863261195 34.0 31.0 35.0 26.0 36.0 92-93 32.04709751511477 34.0 31.0 35.0 26.0 36.0 94-95 32.054200853583176 34.0 31.0 35.0 26.0 35.0 96-97 32.15106743781199 34.0 31.0 35.0 26.0 35.0 98-99 32.33668953657539 34.0 31.0 35.0 27.0 35.0 100 30.81310280296233 32.0 29.0 34.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 12.0 19 45.0 20 354.0 21 2411.0 22 10888.0 23 35304.0 24 88563.0 25 176209.0 26 296412.0 27 441511.0 28 594964.0 29 748283.0 30 902656.0 31 1062641.0 32 1246088.0 33 1471078.0 34 1775956.0 35 2180157.0 36 2790060.0 37 3521214.0 38 3288267.0 39 1328427.0 40 36228.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.921390972740454 21.745391160396203 14.679365978159197 23.653851888704143 2 14.661585020447191 22.573405218984973 40.90907580552166 21.855933955046176 3 17.657441713980642 27.735714342863044 31.241508213939184 23.365335729217126 4 12.425832657846692 19.3348892823943 39.60282067401437 28.63645738574464 5 12.54441367763071 38.68053555348989 36.315568589628896 12.45948217925051 6 28.541520287913368 39.75762406008475 19.1841221057011 12.516733546300781 7 25.06226097531527 33.27566828719766 24.58112492344664 17.080945814040433 8 23.676076911215556 37.67521354932655 21.718729316045728 16.929980223412162 9 25.259776827861497 16.605137585117884 21.780394775314978 36.354690811705645 10-11 23.561467347900656 27.263242822167815 29.828291812681744 19.34699801724978 12-13 24.487071404392186 24.895155732970174 29.762437856972635 20.85533500566501 14-15 21.702859742104337 26.214108662326367 27.190379777264567 24.892651818304724 16-17 21.268313756404773 29.228931038534185 27.872127590557493 21.63062761450355 18-19 21.31597181308906 28.520588580784345 29.399108853423407 20.764330752703188 20-21 22.125867925166492 27.742263459363954 29.19431849302987 20.937550122439685 22-23 21.841782342403576 27.669411794422416 29.087604146131373 21.401201717042635 24-25 21.64130609365632 27.82496853742978 29.08245924922236 21.451266119691546 26-27 21.68232946524826 27.884319338984813 28.980780098832128 21.4525710969348 28-29 21.629027632745824 27.944156048489944 29.00127243402741 21.425543884736825 30-31 21.884387360051395 27.815042606351746 28.86727896105119 21.433291072545668 32-33 21.68740415532907 28.040923490221715 28.78885042751229 21.482821926936925 34-35 21.826646973854857 28.040752857881333 28.780598668607983 21.352001499655824 36-37 21.841774963487364 27.965716865938166 28.723231128234016 21.469277042340455 38-39 21.70778215140959 28.0665246518688 28.762188529910215 21.463504666811396 40-41 21.921409871666448 27.935875004591654 28.639468158976538 21.50324696476536 42-43 21.803067636941485 28.07181604115413 28.41973094533648 21.705385376567904 44-45 21.898152467409478 28.17272733710513 28.25095010591216 21.678170089573236 46-47 21.967826726078943 28.161614571870867 28.0192068047108 21.851351897339384 48-49 21.895667896472567 28.27999804302203 28.003607650561353 21.82072640994405 50-51 21.94251561955296 28.36019942623419 27.88553870965894 21.811746244553905 52-53 22.060614266600144 28.24000882512466 27.845371885775865 21.85400502249933 54-55 22.00325410021185 28.179822351863926 27.894537482094815 21.92238606582941 56-57 22.01337628864424 28.266596578932596 27.874324732412862 21.8457024000103 58-59 21.992376757266737 28.292870553560377 27.8543396324003 21.86041305677259 60-61 22.033441487203813 28.285032303043874 27.870395259606894 21.81113095014541 62-63 22.029649097421082 28.34275715521033 27.814768733688517 21.812825013680076 64-65 22.066639179278667 28.29147884855978 27.74894019343747 21.892941778724083 66-67 22.035940163723183 28.301979153116978 27.731378870467143 21.930701812692696 68-69 21.977081943797447 28.30291439815295 27.794343593304266 21.925660064745333 70-71 21.952811813420684 28.133405780985964 27.847900117822476 22.065882287770876 72-73 22.007346042905667 28.194000804958403 27.782158104698052 22.01649504743788 74-75 21.849219230267565 28.308648955533698 27.81763467722344 22.024497136975295 76-77 21.9730529023083 28.26083406565938 27.812159505054296 21.953953526978022 78-79 21.911213060231756 28.2643105100579 27.769531557078263 22.054944872632085 80-81 21.921123026396184 28.27629671627304 27.798438896247063 22.004141361083715 82-83 21.949872419885164 28.25090788247517 27.868577536606487 21.93064216103318 84-85 21.942306339250074 28.285841209831 27.857206327726473 21.914646123192455 86-87 21.84688677934168 28.30339400269079 27.922480365388946 21.92723885257858 88-89 21.866928810437773 28.279494800276872 27.898194114973148 21.955382274312203 90-91 21.88503085591147 28.30253641667071 27.931662724249417 21.880770003168397 92-93 21.87417192991945 28.301892630771373 27.94714301660106 21.876792422708114 94-95 21.669145438507037 28.332612293301256 28.065930747487293 21.932311520704406 96-97 21.708554935298057 28.454391196315953 28.189491405070992 21.647562463314998 98-99 22.704618736940457 30.433005200737952 28.48068272727461 18.381693335046982 100 22.15451745926441 31.06200947622743 22.232769338205017 24.550703726303137 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5586.0 1 5010.0 2 6907.0 3 9829.0 4 12725.5 5 20521.0 6 27505.0 7 32018.0 8 34706.5 9 33675.5 10 30459.5 11 26878.5 12 27906.5 13 35673.5 14 55738.5 15 84591.0 16 108339.5 17 122737.0 18 128770.5 19 127598.5 20 122751.0 21 117379.0 22 116445.5 23 126524.5 24 149251.0 25 184879.5 26 231121.0 27 280205.0 28 329501.5 29 383284.5 30 434769.5 31 482527.0 32 534397.5 33 584598.5 34 631889.0 35 676532.5 36 722314.0 37 766173.5 38 799136.5 39 825007.5 40 850768.0 41 873591.5 42 887133.5 43 899237.5 44 909116.0 45 915823.0 46 916456.0 47 911453.0 48 902044.5 49 881654.0 50 857846.0 51 828661.0 52 788003.5 53 740783.5 54 693346.0 55 643465.5 56 590406.5 57 533283.5 58 472070.0 59 407763.5 60 340456.0 61 276536.5 62 221063.5 63 172939.0 64 130333.0 65 98461.0 66 74984.0 67 57624.5 68 44712.5 69 33117.0 70 24243.5 71 18163.5 72 13336.0 73 9461.5 74 6742.5 75 4893.5 76 3488.0 77 2416.0 78 1683.5 79 1195.5 80 856.5 81 614.5 82 469.5 83 344.5 84 250.0 85 193.0 86 151.0 87 115.0 88 76.0 89 48.0 90 33.5 91 24.0 92 16.5 93 8.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.1282268787031097 3 0.0 4 3.1821468107979156E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.005882425675960717 14-15 6.81888602313839E-4 16-17 0.001652443379607203 18-19 0.0 20-21 3.864313584592063E-5 22-23 2.341742857809328E-4 24-25 4.867139376585857E-4 26-27 4.551516234086392E-5 28-29 0.009559596648342095 30-31 0.0029244154265787984 32-33 0.0076889394491673054 34-35 0.006718535381314858 36-37 0.009064082115420298 38-39 0.0030968987609412447 40-41 4.2060927496728475E-5 42-43 2.543127857472001E-4 44-45 0.0015065919815277565 46-47 7.902805959714953E-4 48-49 8.974729780588716E-5 50-51 0.0 52-53 2.7158780476935345E-5 54-55 2.4908524068073107E-5 56-57 0.0 58-59 0.0010923397187702806 60-61 0.0 62-63 0.0 64-65 0.0 66-67 6.599218414013813E-4 68-69 0.0014481804819061917 70-71 0.001517901915241932 72-73 6.297291386479594E-4 74-75 1.5315629931719857E-4 76-77 0.004162655715685876 78-79 0.0021044624312052088 80-81 1.6505187537008178E-4 82-83 8.817174303720971E-6 84-85 5.07250580115634E-4 86-87 0.0011642016717450922 88-89 1.4504088100670222E-4 90-91 6.298377641842693E-6 92-93 0.0 94-95 3.3133491989746377E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 944.0 20-21 3203.0 22-23 6527.0 24-25 12498.0 26-27 17012.0 28-29 26085.0 30-31 53508.0 32-33 66799.0 34-35 92477.0 36-37 126282.0 38-39 155786.0 40-41 159617.0 42-43 183688.0 44-45 222621.0 46-47 209754.0 48-49 188791.0 50-51 178161.0 52-53 174385.0 54-55 188726.0 56-57 197903.0 58-59 203764.0 60-61 205303.0 62-63 198076.0 64-65 205779.0 66-67 219162.0 68-69 228661.0 70-71 232994.0 72-73 226809.0 74-75 231953.0 76-77 211744.0 78-79 238504.0 80-81 254400.0 82-83 254530.0 84-85 260742.0 86-87 281469.0 88-89 315178.0 90-91 354916.0 92-93 401615.0 94-95 503526.0 96-97 983419.0 98-99 1604414.0 100-101 1.2116003E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.629728902048 #Duplication Level Percentage of deduplicated Percentage of total 1 89.32805375589177 74.70480918952799 2 7.188498090343027 12.023442930165544 3 1.8243820811207696 4.577177365736524 4 0.7310279705296124 2.445426839808233 5 0.3456923528635308 1.44550788767441 6 0.18820095158122654 0.9443516735907262 7 0.11194830516864814 0.6553544488608449 8 0.0681822210376538 0.45616485290548014 9 0.048551757031874455 0.3654333250464388 >10 0.16178684737878604 2.0859063054199285 >50 0.002761216706014285 0.15087456959041962 >100 8.641519510683901E-4 0.10998357714097104 >500 4.0255145911426415E-5 0.02597521336569482 >1k 1.0043250155570172E-5 0.009591821166742065 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.545924015425593E-6 0.0 2 0.0 3.182146810797915E-5 0.0 4.545924015425593E-6 0.0 3 0.0 3.182146810797915E-5 0.0 4.545924015425593E-6 0.0 4 0.0 5.909701220053271E-5 0.0 9.091848030851186E-6 9.091848030851186E-6 5 0.0 5.909701220053271E-5 0.0 9.091848030851186E-6 9.091848030851186E-6 6 0.0 5.909701220053271E-5 0.0 1.363777204627678E-5 1.363777204627678E-5 7 0.0 5.909701220053271E-5 0.0 2.2729620077127965E-5 1.363777204627678E-5 8 0.0 6.36429362159583E-5 0.0 2.2729620077127965E-5 1.363777204627678E-5 9 0.0 1.0455625235478864E-4 0.0 3.636739212340474E-5 1.363777204627678E-5 10-11 0.0 1.0682921436250144E-4 0.0 5.0005164169681525E-5 1.363777204627678E-5 12-13 0.0 1.1364810038563983E-4 0.0 7.728070826223508E-5 1.363777204627678E-5 14-15 2.2729620077127965E-6 1.7729103660159813E-4 0.0 7.728070826223508E-5 2.045665806941517E-5 16-17 4.545924015425593E-6 1.8638288463244932E-4 0.0 8.182663227766067E-5 2.2729620077127965E-5 18-19 4.545924015425593E-6 2.000206566787261E-4 0.0 9.091848030851186E-5 2.2729620077127965E-5 20-21 4.545924015425593E-6 2.1365842872500288E-4 0.0 1.0682921436250144E-4 2.2729620077127965E-5 22-23 1.1364810038563983E-5 2.3638804880213082E-4 0.0 1.2046698640877821E-4 2.5002582084840762E-5 24-25 2.045665806941517E-5 2.6820951691011E-4 0.0 1.3637772046276779E-4 2.9548506100266353E-5 26-27 2.2729620077127965E-5 2.8184728895638676E-4 0.0 1.7956399860931093E-4 3.4094430115691946E-5 28-29 2.2729620077127965E-5 2.8184728895638676E-4 0.0 3.5458207320319626E-4 3.636739212340474E-5 30-31 2.9548506100266353E-5 3.136687570643659E-4 0.0 0.0011137513837792701 3.636739212340474E-5 32-33 3.182146810797915E-5 3.182146810797915E-4 0.0 0.002782105497440463 3.636739212340474E-5 34-35 3.4094430115691946E-5 3.6140095922633465E-4 0.0 0.005061886391176398 4.545924015425593E-5 36-37 3.636739212340474E-5 4.045872373728778E-4 0.0 0.008316767986221123 5.0005164169681525E-5 38-39 3.636739212340474E-5 4.3413574347314415E-4 0.0 0.014117367029904179 5.0005164169681525E-5 40-41 5.0005164169681525E-5 4.864138696505385E-4 0.0 0.020167991894435643 5.0005164169681525E-5 42-43 5.0005164169681525E-5 4.977786796891025E-4 0.0 0.025932223545995295 5.0005164169681525E-5 44-45 5.9097012200532705E-5 5.500568058664967E-4 0.0 0.032526086330370116 5.0005164169681525E-5 46-47 6.59158982236711E-5 5.909701220053271E-4 0.0 0.03970410035072713 5.227812617739432E-5 48-49 7.273478424680949E-5 5.909701220053271E-4 0.0 0.04684120105494531 6.36429362159583E-5 50-51 7.273478424680949E-5 6.659778682598493E-4 0.0 0.05392147770897067 6.36429362159583E-5 52-53 7.273478424680949E-5 6.773426782984134E-4 0.0 0.06090401699666438 6.818886023138389E-5 54-55 7.500774625452228E-5 6.864345263292645E-4 0.0 0.06815249283926049 7.273478424680949E-5 56-57 7.728070826223508E-5 6.909804503446901E-4 0.0 0.07457588347305685 7.273478424680949E-5 58-59 7.728070826223508E-5 6.932534123524029E-4 0.0 0.08102200372693034 7.273478424680949E-5 60-61 7.728070826223508E-5 7.023452603832541E-4 0.0 0.08744312139871899 7.273478424680949E-5 62-63 7.728070826223508E-5 7.182559944372437E-4 0.0 0.09386196610849992 7.273478424680949E-5 64-65 7.728070826223508E-5 7.773530066377764E-4 0.0 0.09954209816577421 7.273478424680949E-5 66-67 7.728070826223508E-5 7.978096647071917E-4 0.0 0.10550407751200488 7.273478424680949E-5 68-69 7.728070826223508E-5 8.114474367534683E-4 0.0 0.11176608784325362 7.273478424680949E-5 70-71 7.728070826223508E-5 8.205392847843195E-4 0.0 0.1170211760050856 7.273478424680949E-5 72-73 7.728070826223508E-5 8.296311328151707E-4 0.0 0.12143981414807929 7.273478424680949E-5 74-75 7.728070826223508E-5 8.569066769077243E-4 0.0 0.1250106374621961 7.273478424680949E-5 76-77 7.728070826223508E-5 8.910011070234163E-4 0.0 0.12814277910882432 7.273478424680949E-5 78-79 7.728070826223508E-5 9.091848030851186E-4 0.0 0.1302702715480435 7.273478424680949E-5 80-81 7.728070826223508E-5 9.114577650928314E-4 0.0 0.131065808250743 7.955367026994788E-5 82-83 7.728070826223508E-5 9.137307271005442E-4 0.0 0.13166587022077916 8.637255629308627E-5 84-85 7.728070826223508E-5 9.137307271005442E-4 0.0 0.13192271492765073 8.637255629308627E-5 86-87 7.728070826223508E-5 9.27368499146821E-4 0.0 0.13210909781228314 9.091848030851186E-5 88 7.728070826223508E-5 9.364603471776722E-4 0.0 0.13212728150834485 9.546440432393746E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24750 0.0 48.882256 1 GTATCAA 44580 0.0 35.13421 1 TCAACGC 54280 0.0 28.053734 4 ATCAACG 54600 0.0 27.919819 3 CAACGCA 55460 0.0 27.44183 5 AACGCAG 57090 0.0 26.738558 6 TATCAAC 58370 0.0 26.40516 2 ACGCAGA 66415 0.0 22.886461 7 CGCAGAG 67110 0.0 22.680471 8 GTACATG 59380 0.0 20.360426 1 TACATGG 60170 0.0 19.566526 2 ACATGGG 60075 0.0 19.067879 3 GCAGAGT 79145 0.0 19.010885 9 AGAGTAC 71960 0.0 18.08269 10-11 GAGTACT 46385 0.0 17.835474 12-13 CAGAGTA 78230 0.0 17.226967 10-11 CATGGGG 43270 0.0 16.494133 4 AGTACTT 51880 0.0 15.761757 12-13 GTACTTT 53685 0.0 15.456164 14-15 GTGGTAT 12165 0.0 15.010356 1 >>END_MODULE