##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139306_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 22160805 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.344965311503802 31.0 31.0 34.0 30.0 34.0 2 31.49759708638743 31.0 31.0 34.0 30.0 34.0 3 31.536554876955055 31.0 31.0 34.0 30.0 34.0 4 35.35390027573457 37.0 35.0 37.0 33.0 37.0 5 35.12450423168292 37.0 35.0 37.0 32.0 37.0 6 35.152753972610654 37.0 35.0 37.0 32.0 37.0 7 35.03271000308879 37.0 35.0 37.0 32.0 37.0 8 35.005064391839554 37.0 35.0 37.0 32.0 37.0 9 36.53390050587061 39.0 35.0 39.0 32.0 39.0 10-11 36.4314015443031 38.0 35.0 39.0 32.0 39.0 12-13 36.36192543547042 38.0 35.0 39.0 32.0 39.0 14-15 37.413273773222585 39.0 36.0 41.0 32.0 41.0 16-17 37.39483809365228 39.0 36.0 41.0 32.0 41.0 18-19 37.40330622014859 39.0 36.0 41.0 32.0 41.0 20-21 37.37612505238965 39.0 36.0 41.0 31.5 41.0 22-23 37.28386886763936 39.0 36.0 41.0 31.0 41.0 24-25 37.17924342256249 39.0 36.0 41.0 31.0 41.0 26-27 36.9521196850517 39.0 36.0 40.0 30.5 41.0 28-29 36.77531469669357 39.0 35.5 40.0 30.0 41.0 30-31 36.6127484092773 38.5 35.0 40.0 30.0 41.0 32-33 36.41684442913399 38.0 35.0 40.0 30.0 41.0 34-35 36.25541669881594 38.0 35.0 40.0 30.0 41.0 36-37 36.10848576382428 38.0 34.5 40.0 29.5 41.0 38-39 35.94518076706132 38.0 34.0 40.0 29.0 41.0 40-41 35.79790870698669 38.0 34.0 40.0 29.0 41.0 42-43 35.642713614919614 38.0 34.0 40.0 28.0 41.0 44-45 35.477833480505865 38.0 33.5 40.0 27.0 41.0 46-47 35.77014479382444 38.0 34.0 40.0 28.5 41.0 48-49 36.15740138127106 38.0 34.0 40.0 29.0 41.0 50-51 36.170280135719864 38.0 34.0 40.0 29.0 41.0 52-53 36.07559628689388 38.0 34.0 40.0 28.5 41.0 54-55 35.961136128455536 38.0 34.0 40.0 28.0 41.0 56-57 35.816667139238064 38.0 34.0 40.0 28.0 41.0 58-59 35.64010691834605 38.0 34.0 40.0 28.0 41.0 60-61 35.449491242679564 37.5 33.5 40.0 28.0 41.0 62-63 35.22662918900082 37.0 33.0 40.0 28.0 41.0 64-65 34.922313898402 36.5 33.0 39.5 27.0 41.0 66-67 34.6516622335015 36.0 32.5 39.0 26.5 41.0 68-69 34.38783032597317 36.0 32.0 39.0 26.0 40.0 70-71 34.119809176803145 35.0 32.0 39.0 26.0 40.0 72-73 33.82489432277967 35.0 32.0 38.0 26.0 40.0 74-75 33.505860782241335 35.0 31.0 37.5 26.0 39.5 76-77 31.789958542096187 33.5 29.5 35.5 25.0 38.5 78-79 32.86088258017777 34.0 31.0 36.0 26.0 39.0 80-81 32.93614364859113 34.0 31.0 36.0 26.0 38.5 82-83 32.721990564399675 34.0 31.0 36.0 26.0 37.5 84-85 32.50718969494014 34.0 31.0 35.0 26.0 37.0 86-87 32.302121220885994 34.0 31.0 35.0 26.0 36.5 88-89 32.13101005787636 34.0 31.0 35.0 26.0 36.0 90-91 32.034514059129755 34.0 31.0 35.0 26.0 36.0 92-93 31.98805140232061 34.0 31.0 35.0 26.0 35.5 94-95 32.000067159238405 34.0 31.0 35.0 26.0 35.0 96-97 32.10154258235578 34.0 31.0 35.0 26.0 35.0 98-99 32.29315827637654 34.0 31.0 35.0 27.0 35.0 100 30.75509816630673 32.0 29.0 34.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 8.0 19 57.0 20 352.0 21 2645.0 22 11902.0 23 38245.0 24 94032.0 25 187054.0 26 312136.0 27 459835.0 28 617858.0 29 774175.0 30 925497.0 31 1084556.0 32 1264942.0 33 1492617.0 34 1795543.0 35 2203878.0 36 2823736.0 37 3554422.0 38 3255274.0 39 1231511.0 40 30528.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.03164596231951 21.632891945937885 14.551754776056194 23.78370731568641 2 14.786501544820673 22.507252402399242 40.80559928930387 21.90064676347621 3 17.765135336915787 27.55857921226237 31.185699255961147 23.4905861948607 4 12.50897304989476 19.228589359844523 39.53023545535622 28.732202134904494 5 12.59067980608105 38.63915593318925 36.31285054852475 12.45731371220495 6 28.742376461504897 39.683928449350105 19.086662239932167 12.487032849212833 7 25.22589319295937 33.19602785187632 24.44087658368006 17.137202371484246 8 23.674753692386176 37.73432869428706 21.61377260437967 16.977145008947105 9 25.22085276234324 16.574573892961016 21.642589247096396 36.56198409759934 10-11 23.635964487752137 27.180271655294106 29.81536546167885 19.3683983952749 12-13 24.518617091668045 24.770420870870534 29.72610661428466 20.984855423176764 14-15 21.74718122684114 26.14018431445218 27.075325665496297 25.037308793210382 16-17 21.38105813366122 29.164067061202015 27.745975323385203 21.70889948175156 18-19 21.431762068210066 28.462077528320833 29.210759717438062 20.895400686031035 20-21 22.206965905878604 27.69776184333607 29.024434084229306 21.070838166556012 22-23 21.926315285846535 27.600305483124178 28.905692918144695 21.56768631288459 24-25 21.742698062598958 27.761225036738807 28.907427507328627 21.588649393333608 26-27 21.780940218276857 27.845114952531958 28.794048906328474 21.57989592286271 28-29 21.761663467122098 27.906790123819686 28.782630685428508 21.54891572362971 30-31 22.012935433461234 27.754509154568357 28.68869314273767 21.543862269232736 32-33 21.83479117715866 27.92793549381254 28.62985362941273 21.60741969961607 34-35 21.974141359167383 27.918469482622726 28.62353086408622 21.483858294123664 36-37 21.95992746746258 27.877648115941938 28.573441778018065 21.588982638577416 38-39 21.83554650806185 27.97405710523208 28.62180383888332 21.568592547822753 40-41 22.02591860600363 27.87129894274557 28.489118802771042 21.613663648479754 42-43 21.917494162674764 27.962851890542616 28.30913126821013 21.810522678572493 44-45 22.011021995038753 28.083781814775616 28.121454585090973 21.78374160509466 46-47 22.0608727511559 28.052683163150427 27.926990858851585 21.959453226842083 48-49 21.984748063888226 28.16235422299671 27.935433093575778 21.917464619539288 50-51 22.038592625528278 28.216314603727987 27.81904936919682 21.926043401546917 52-53 22.129442404549035 28.136681048160582 27.768506558782168 21.96536998850821 54-55 22.09253360111671 28.069168199028837 27.822060380256193 22.01623781959826 56-57 22.040422835929128 28.17824681196312 27.813917071722337 21.967413280385415 58-59 22.08636369474798 28.206202301154654 27.76924250656359 21.938191497533772 60-61 22.146013229222973 28.19169586915777 27.771586699407365 21.890704202211893 62-63 22.09595188329443 28.232708695761378 27.744337359820047 21.92700206112415 64-65 22.12628334585198 28.164568860654448 27.73245300388686 21.97669478960671 66-67 22.127966167485415 28.195644083492972 27.65665740650575 22.01973234251586 68-69 22.053110014441874 28.22714354600184 27.71020737492172 22.009539064634566 70-71 22.05878187920943 28.038576132961225 27.783496228134236 22.11914575969511 72-73 22.084045543340643 28.1192432761896 27.714705931134674 22.082005249335083 74-75 21.961817537042364 28.216411005356495 27.743633425379254 22.078138032221883 76-77 22.053110882977222 28.15679168115131 27.744386655092164 22.045710780779306 78-79 22.008836892085824 28.16656297125501 27.711374767353337 22.11322536930583 80-81 22.006157519319608 28.17744730660338 27.751487606649576 22.06490756742743 82-83 22.007217177661612 28.145989390627047 27.837509236893577 22.00928419481777 84-85 22.05603926208007 28.16922586382419 27.78562686205101 21.989108012044724 86-87 21.9306273591992 28.20050995899679 27.86356172483087 22.00530095697314 88-89 21.967964400724664 28.17416976476582 27.845817312394956 22.01204852211456 90-91 21.96649400690067 28.210061468773418 27.89098163000665 21.93246289431926 92-93 21.946163050492 28.18387626161327 27.909106716460542 21.960853971434183 94-95 21.760941721526297 28.216843326897294 28.03795636299776 21.984258588578648 96-97 21.791467420245016 28.368854765949532 28.11978119184852 21.719896621956934 98-99 22.794052090564666 30.374350490996232 28.403728815895736 18.427868602543363 100 22.271638032411413 31.027062560053164 22.13899026314032 24.562309144395098 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5531.0 1 4912.5 2 6495.5 3 9091.0 4 11728.0 5 18958.0 6 25668.0 7 29876.0 8 32131.0 9 31122.0 10 28123.0 11 24668.0 12 25656.5 13 32823.0 14 51252.5 15 78152.0 16 100009.5 17 112929.0 18 118165.5 19 117102.0 20 113064.0 21 108211.5 22 107638.0 23 117652.0 24 139587.0 25 174618.0 26 220715.0 27 268554.0 28 314079.0 29 364414.5 30 413742.5 31 461328.0 32 514631.0 33 565577.5 34 616505.5 35 665003.5 36 713235.0 37 760364.0 38 795794.0 39 822887.0 40 850366.5 41 874560.0 42 889156.5 43 903089.5 44 915447.0 45 925835.5 46 928460.0 47 923777.0 48 915047.0 49 893672.5 50 866942.5 51 837555.5 52 800559.5 53 756023.5 54 706957.5 55 654121.5 56 600640.0 57 545053.0 58 482363.0 59 416764.0 60 349921.5 61 284242.0 62 225944.0 63 175593.0 64 132397.5 65 99776.0 66 75440.5 67 57667.5 68 44464.0 69 32939.0 70 23974.5 71 17700.0 72 13053.5 73 9470.0 74 6760.5 75 4816.0 76 3419.5 77 2367.5 78 1640.0 79 1190.0 80 880.5 81 633.5 82 458.0 83 308.5 84 211.0 85 156.0 86 115.5 87 81.5 88 49.0 89 35.0 90 29.0 91 23.5 92 18.0 93 9.5 94 3.5 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.1269764342946928 3 0.0 4 4.512471455797747E-6 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0058143194707953975 14-15 6.520521253627745E-4 16-17 0.001764376339216919 18-19 0.0 20-21 2.9333275629515223E-5 22-23 2.0988379817366343E-4 24-25 4.379762723871064E-4 26-27 5.6474988447476364E-5 28-29 0.009602007744323337 30-31 0.002952422392384996 32-33 0.0077665339055391115 34-35 0.006850379314996218 36-37 0.00905877229490872 38-39 0.0031598534683496865 40-41 3.0096663305641083E-5 42-43 2.51806695554024E-4 44-45 0.0014859163112184001 46-47 8.025172449203093E-4 48-49 1.0779520549443181E-4 50-51 0.0 52-53 3.895354988812784E-5 54-55 2.4542658601163687E-5 56-57 0.0 58-59 0.0011070185299658546 60-61 0.0 62-63 0.0 64-65 0.0 66-67 6.365432407590744E-4 68-69 0.001347455755318425 70-71 0.0013948325360072034 72-73 6.370837927549756E-4 74-75 1.8222214631143755E-4 76-77 0.003855389910772078 78-79 0.0019594722684713036 80-81 1.5225309629932215E-4 82-83 2.287155389651657E-5 84-85 4.6399264803649186E-4 86-87 0.0010333200071360902 88-89 1.1676709634962105E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1032.0 20-21 3275.0 22-23 6358.0 24-25 12581.0 26-27 16869.0 28-29 25420.0 30-31 50480.0 32-33 62827.0 34-35 86987.0 36-37 117807.0 38-39 143996.0 40-41 148101.0 42-43 170398.0 44-45 205254.0 46-47 192296.0 48-49 174953.0 50-51 165111.0 52-53 161489.0 54-55 175613.0 56-57 184627.0 58-59 188863.0 60-61 191652.0 62-63 185609.0 64-65 193750.0 66-67 206183.0 68-69 214712.0 70-71 220253.0 72-73 215765.0 74-75 221102.0 76-77 198906.0 78-79 224529.0 80-81 243381.0 82-83 246744.0 84-85 252613.0 86-87 275419.0 88-89 311539.0 90-91 350485.0 92-93 403994.0 94-95 514209.0 96-97 1021365.0 98-99 1669713.0 100-101 1.2504545E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.29170624064822 #Duplication Level Percentage of deduplicated Percentage of total 1 89.36288038508664 74.43186781852822 2 7.069755230421292 11.77703951691073 3 1.8521511915179267 4.628064988715332 4 0.7272059780781457 2.4228090681011274 5 0.34463632250428394 1.435267366694206 6 0.19974880349040144 0.9982451197346093 7 0.12292194549583686 0.7166865002337751 8 0.08016813295344416 0.5341872463855601 9 0.055769726311279987 0.4180640094936435 >10 0.18033346086151217 2.2928353612753867 >50 0.0037443650124258147 0.20778584757459415 >100 6.224005379853439E-4 0.08662589907662646 >500 4.142026680175989E-5 0.025562419464545662 >1k 2.0637462037083224E-5 0.02495883781168575 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.024942911595495E-6 0.0 0.0 0.0 3 0.0 1.3537414367393243E-5 0.0 1.804988582319099E-5 0.0 4 0.0 5.8662128925370713E-5 0.0 3.609977164638198E-5 0.0 5 4.512471455797747E-6 5.8662128925370713E-5 0.0 3.609977164638198E-5 0.0 6 1.3537414367393243E-5 5.8662128925370713E-5 0.0 4.5124714557977475E-5 4.512471455797747E-6 7 1.3537414367393243E-5 5.8662128925370713E-5 0.0 4.9637186013775224E-5 9.024942911595495E-6 8 1.804988582319099E-5 5.8662128925370713E-5 0.0 5.414965746957297E-5 9.024942911595495E-6 9 2.2562357278988738E-5 9.024942911595495E-5 0.0 8.122448620435945E-5 9.024942911595495E-6 10-11 4.738095028587635E-5 9.024942911595495E-5 0.0 9.024942911595495E-5 9.024942911595495E-6 12-13 5.8662128925370713E-5 9.024942911595495E-5 0.0 9.701813629965156E-5 1.1281178639494369E-5 14-15 7.671201474856171E-5 1.2183672930653918E-4 0.0 1.286054364902358E-4 2.4818593006887612E-5 16-17 9.927437202755045E-5 1.2183672930653918E-4 0.0 1.5116779376922451E-4 3.158730019058423E-5 18-19 1.1281178639494369E-4 1.353741436739324E-4 0.0 1.5793650095292117E-4 3.158730019058423E-5 20-21 1.286054364902358E-4 1.5116779376922451E-4 0.0 1.7598638677611216E-4 3.158730019058423E-5 22-23 1.466553223134268E-4 2.0306121551089864E-4 2.2562357278988737E-6 1.8501132968770764E-4 3.609977164638198E-5 24-25 1.872675654156065E-4 2.14342394150393E-4 4.512471455797747E-6 2.2562357278988737E-4 4.5124714557977475E-5 26-27 2.0757368696669638E-4 2.2111110133408963E-4 4.512471455797747E-6 2.820294659873592E-4 4.5124714557977475E-5 28-29 2.0757368696669638E-4 2.2111110133408963E-4 6.768707183696621E-6 6.407709467232801E-4 4.5124714557977475E-5 30-31 2.1885486560619074E-4 2.865419374431569E-4 9.024942911595495E-6 0.002770657473859817 4.738095028587635E-5 32-33 2.391609871572806E-4 2.9105440889895474E-4 9.024942911595495E-6 0.0061550110657081275 4.9637186013775224E-5 34-35 2.6397958016416824E-4 3.4746030209642655E-4 9.024942911595495E-6 0.009498752414454258 5.414965746957297E-5 36-37 2.8428570171525806E-4 4.016099595659995E-4 9.024942911595495E-6 0.014399296415450612 5.414965746957297E-5 38-39 2.8428570171525806E-4 4.219160811170894E-4 9.024942911595495E-6 0.022142697433599548 5.414965746957297E-5 40-41 3.1136053045004457E-4 4.918593886819544E-4 9.024942911595495E-6 0.02934911434850855 5.414965746957297E-5 42-43 3.1136053045004457E-4 5.099092745051454E-4 9.024942911595495E-6 0.03601854716017762 5.414965746957297E-5 44-45 3.248979448174378E-4 5.843650535258082E-4 9.024942911595495E-6 0.043127945938786966 6.317460038116846E-5 46-47 3.3843535918483107E-4 6.407709467232801E-4 9.024942911595495E-6 0.05081945353519423 7.219954329276396E-5 48-49 3.3843535918483107E-4 6.407709467232801E-4 9.024942911595495E-6 0.058154475886593476 8.122448620435945E-5 50-51 3.3843535918483107E-4 6.97176839920752E-4 9.024942911595495E-6 0.06506758215687562 8.122448620435945E-5 52-53 3.5648524500802204E-4 6.994330756486508E-4 9.024942911595495E-6 0.07158584717477547 9.250566484385382E-5 54-55 3.655101879196175E-4 7.062017828323474E-4 9.024942911595495E-6 0.07760774033253756 1.0604307921124707E-4 56-57 3.655101879196175E-4 7.174829614718419E-4 9.024942911595495E-6 0.08342431603906086 1.0829931493914594E-4 58-59 3.813038380149097E-4 7.197391971997408E-4 9.024942911595495E-6 0.08903106182288956 1.1055555066704481E-4 60-61 3.92585016654404E-4 7.287641401113362E-4 9.024942911595495E-6 0.09462652642807876 1.1281178639494369E-4 62-63 4.038661952938984E-4 7.332766115671339E-4 9.024942911595495E-6 0.09997831757465489 1.1732425785074143E-4 64-65 4.128911382054939E-4 8.483446336899765E-4 9.024942911595495E-6 0.10512930374144802 1.1732425785074143E-4 66-67 4.1514737393339276E-4 8.483446336899765E-4 9.024942911595495E-6 0.11012460964301612 1.195804935786403E-4 68-69 4.2417231684498824E-4 8.663945195131674E-4 9.024942911595495E-6 0.1149710039865429 1.2183672930653918E-4 70-71 4.28684788300786E-4 8.912131125200552E-4 9.024942911595495E-6 0.11947445049942906 1.2183672930653918E-4 72-73 4.28684788300786E-4 9.002380554316506E-4 9.024942911595495E-6 0.12322882675065278 1.3988661512973017E-4 74-75 4.3094102402868486E-4 9.250566484385382E-4 9.024942911595495E-6 0.12613937083964233 1.3988661512973017E-4 76-77 4.331972597565838E-4 9.837187773639089E-4 9.024942911595495E-6 0.12884459747739307 1.4214285085762903E-4 78-79 4.331972597565838E-4 0.0010107936060986954 9.024942911595495E-6 0.1305751302806915 1.4439908658552792E-4 80-81 4.377097312123815E-4 0.001015306077554493 9.024942911595495E-6 0.13123169487751007 1.4439908658552792E-4 82-83 4.399659669402804E-4 0.0010175623132823918 9.024942911595495E-6 0.13182959734540328 1.4891155804132566E-4 84-85 4.4222220266817926E-4 0.0010310997276497852 9.024942911595495E-6 0.13208229574692798 1.4891155804132566E-4 86-87 4.4222220266817926E-4 0.0010378684348334819 9.024942911595495E-6 0.13222895106924137 1.4891155804132566E-4 88 4.4222220266817926E-4 0.001105555506670448 9.024942911595495E-6 0.13223797601215298 1.4891155804132566E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24005 0.0 46.990784 1 GTATCAA 41995 0.0 34.85682 1 TCAACGC 51200 0.0 27.760372 4 ATCAACG 51415 0.0 27.685108 3 CAACGCA 52425 0.0 27.079676 5 AACGCAG 53980 0.0 26.392908 6 TATCAAC 55350 0.0 26.013668 2 ACGCAGA 62780 0.0 22.68352 7 CGCAGAG 63595 0.0 22.38622 8 GTACATG 57700 0.0 20.008509 1 TACATGG 56845 0.0 19.78453 2 ACATGGG 58725 0.0 18.613424 3 GCAGAGT 76390 0.0 18.43906 9 AGAGTAC 68415 0.0 18.119076 10-11 GAGTACT 44815 0.0 17.678524 12-13 CAGAGTA 74500 0.0 16.929384 10-11 CATGGGG 42460 0.0 16.598888 4 GTGGTAT 11920 0.0 15.760251 1 AGTACTT 50190 0.0 15.689076 12-13 GTACTTT 51720 0.0 15.21168 14-15 >>END_MODULE