##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139305_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10736432 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6614779472361 33.0 33.0 33.0 33.0 33.0 2 32.65757227354488 33.0 33.0 33.0 33.0 33.0 3 32.64669705913473 33.0 33.0 33.0 33.0 33.0 4 36.56458430510248 37.0 37.0 37.0 37.0 37.0 5 36.5873492236527 37.0 37.0 37.0 37.0 37.0 6 36.579164754175316 37.0 37.0 37.0 37.0 37.0 7 36.55211675536156 37.0 37.0 37.0 37.0 37.0 8 36.55187188816545 37.0 37.0 37.0 37.0 37.0 9 36.58067782667464 37.0 37.0 37.0 37.0 37.0 10-11 36.51894716978602 37.0 37.0 37.0 37.0 37.0 12-13 36.51805502051333 37.0 37.0 37.0 37.0 37.0 14-15 38.554984933542165 40.0 37.0 40.0 37.0 40.0 16-17 38.49407000388956 40.0 37.0 40.0 37.0 40.0 18-19 38.530835011109836 40.0 37.0 40.0 37.0 40.0 20-21 38.54043450685918 40.0 37.0 40.0 37.0 40.0 22-23 38.54754492892181 40.0 37.0 40.0 37.0 40.0 24-25 38.52552606522012 40.0 37.0 40.0 37.0 40.0 26-27 38.414273192927965 40.0 37.0 40.0 37.0 40.0 28-29 38.369286482767706 40.0 37.0 40.0 37.0 40.0 30-31 38.30020792363892 40.0 37.0 40.0 37.0 40.0 32-33 38.22826897345983 40.0 37.0 40.0 37.0 40.0 34-35 38.18782455375302 40.0 37.0 40.0 37.0 40.0 36-37 38.14747485945911 40.0 37.0 40.0 37.0 40.0 38-39 38.09273857728135 40.0 37.0 40.0 35.0 40.0 40-41 38.04500633146449 40.0 37.0 40.0 33.0 40.0 42-43 37.996390968839364 40.0 37.0 40.0 33.0 40.0 44-45 37.95837686227435 40.0 37.0 40.0 33.0 40.0 46-47 37.899832388095966 40.0 37.0 40.0 33.0 40.0 48-49 37.89664230193782 40.0 37.0 40.0 33.0 40.0 50-51 37.83429972144198 40.0 37.0 40.0 33.0 40.0 52-53 37.731600751469536 40.0 37.0 40.0 33.0 40.0 54-55 37.595022505212725 40.0 37.0 40.0 33.0 40.0 56-57 37.52145300457909 40.0 37.0 40.0 33.0 40.0 58-59 37.40113281716765 40.0 37.0 40.0 33.0 40.0 60-61 37.27372916054628 37.0 37.0 40.0 33.0 40.0 62-63 37.10692321915225 37.0 37.0 40.0 33.0 40.0 64-65 36.946211614346595 37.0 37.0 40.0 33.0 40.0 66-67 36.75304596752322 37.0 37.0 40.0 33.0 40.0 68-69 36.477532025001366 37.0 37.0 40.0 33.0 40.0 70-71 36.26010281291033 37.0 37.0 40.0 33.0 40.0 72-73 35.93773005398686 37.0 37.0 37.0 33.0 40.0 74-75 35.843712653613764 37.0 37.0 37.0 33.0 40.0 76-77 34.17397243028553 35.0 33.0 37.0 30.0 37.0 78-79 35.358637900010066 37.0 33.0 37.0 33.0 37.0 80-81 35.382458910689444 37.0 33.0 37.0 33.0 37.0 82-83 35.212784301888334 37.0 33.0 37.0 33.0 37.0 84-85 35.07006147842638 37.0 33.0 37.0 33.0 37.0 86-87 34.95788159702523 37.0 33.0 37.0 33.0 37.0 88-89 34.83820691478496 37.0 33.0 37.0 33.0 37.0 90-91 34.736605569913166 37.0 33.0 37.0 33.0 37.0 92-93 34.701091770041955 37.0 33.0 37.0 33.0 37.0 94-95 34.7031593011846 37.0 33.0 37.0 33.0 37.0 96-97 34.6843848636768 37.0 33.0 37.0 33.0 37.0 98-99 34.6827906554888 37.0 33.0 37.0 33.0 37.0 100 34.67441072267679 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 11.0 20 69.0 21 326.0 22 1230.0 23 3493.0 24 8068.0 25 16260.0 26 27879.0 27 45474.0 28 67668.0 29 97369.0 30 134384.0 31 184299.0 32 249827.0 33 342660.0 34 480631.0 35 708434.0 36 1246130.0 37 3017367.0 38 3959485.0 39 145365.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.59485199552328 20.886436015242307 14.820100383442098 22.698611605792316 2 14.260137818597462 21.58899716404854 42.66870036526101 21.482164652092987 3 17.955713779028265 27.548556168380706 30.77599709102614 23.719732961564883 4 11.922666673621181 18.905200535894977 39.99107897297724 29.181053817506598 5 12.75432098857423 38.47970163644682 35.570960631986495 13.195016742992458 6 28.002217123901126 38.85563658392285 19.680504659276004 13.461641632900017 7 25.549959241580446 33.67116747910293 23.524528446694397 17.254344832622234 8 23.914257548504008 36.851441894290396 21.71532404806364 17.518976509141957 9 25.676719860676116 17.24312811102246 21.696175876842396 35.383976151459024 10-11 23.643643130848172 27.567034516675264 28.98269509121426 19.806627261262303 12-13 24.868313799575624 25.271022767519153 29.221154718007085 20.639508714898135 14-15 22.003789852938635 26.390412600690528 27.449157184078445 24.156640362292393 16-17 20.813180766198677 29.668878823057792 28.010073551436825 21.507866859306706 18-19 20.842268641947342 28.409004965523 30.281349520958173 20.467376871571485 20-21 22.19679933331902 27.358039568954272 30.079880910971085 20.365280186755623 22-23 21.70881573526312 27.44083166122192 29.943931444192867 20.906421159322093 24-25 21.235890545031815 27.689910043744813 30.097586733216737 20.97661267800664 26-27 21.1406231716832 27.86584195458125 30.031953065355804 20.961581808379748 28-29 20.97513738282273 27.937306103176418 30.133818179512563 20.953738334488293 30-31 21.37889426164427 27.725018729497148 30.006075680377485 20.890011328481098 32-33 21.158841326151208 27.891248625095105 29.92422257759441 21.025687471159276 34-35 21.20430592080768 27.90460349294766 29.935802326401433 20.955288259843226 36-37 21.140995877352108 27.935243067050227 29.875005802149186 21.04875525344848 38-39 21.01776816846519 27.953662667618328 29.938027961228673 21.09054120268781 40-41 21.28569358293089 27.87542499691163 29.816758954983502 21.022122465173975 42-43 21.272721447337506 27.928534083349643 29.575833603216818 21.222910866096033 44-45 21.330397300111187 28.153283746764174 29.282651605449058 21.233667347675585 46-47 21.441328409440533 28.11363650433484 28.908177771514982 21.536857314709643 48-49 21.391905130987134 28.26316106807302 28.81705565834568 21.527878142594158 50-51 21.391145525215574 28.389573461759554 28.66769465010493 21.55158636291994 52-53 21.49701983384649 28.366598738459786 28.585370273616867 21.551011154076857 54-55 21.563339858578786 28.337772138265606 28.501175145696557 21.597712857459054 56-57 21.600391067900524 28.40821394837649 28.389306572504232 21.602088411218762 58-59 21.45453223737843 28.46334903186612 28.553687424384822 21.528431306370628 60-61 21.592941682101966 28.536880531156754 28.378599895982816 21.491577890758464 62-63 21.514092754456062 28.56719280880531 28.371878684944214 21.54683575179442 64-65 21.46468541454299 28.55679823552755 28.35667993372532 21.621836416204136 66-67 21.594242949403462 28.516546076698614 28.208759739179257 21.680451234718667 68-69 21.664163625267722 28.472397961769314 28.231147085076124 21.632291327886833 70-71 21.55758027487426 28.2650773885618 28.376051126435968 21.80129121012797 72-73 21.676168191668467 28.25883559639944 28.283793068341712 21.78120314359039 74-75 21.569095529358147 28.429209016290603 28.202730224050903 21.798965230300347 76-77 21.655879961482952 28.361905973348357 28.125937333051503 21.85627673211719 78-79 21.71621171943183 28.332448299199843 28.089700208391 21.86163977297733 80-81 21.666931056974718 28.354722421482077 28.107280010050538 21.87106651149267 82-83 21.757355692809842 28.276594479002913 28.22003455926041 21.746015268926836 84-85 21.861919906061107 28.24582435514466 28.149444636685462 21.742811102108767 86-87 21.665951501933982 28.303048581189877 28.201460174715542 21.8295397421606 88-89 21.787731360579148 28.236955962049947 28.193993128900313 21.78131954847059 90-91 21.870243832329287 28.14427538551473 28.230379248463304 21.75510153369267 92-93 21.85231334443662 28.12188060714283 28.25542049027499 21.77038555814556 94-95 21.714439459550068 28.20074535358251 28.278048531378076 21.806766655489344 96-97 21.763193909693417 28.342783722960657 28.387108094031017 21.506914273314916 98-99 22.844720330573377 30.16043394664204 28.627041104175028 18.36780461860955 100 21.710123740406203 31.215132280657265 22.541161026620223 24.53358295231631 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2977.0 1 2579.5 2 3376.0 3 4925.0 4 6746.5 5 11082.5 6 14820.5 7 17796.0 8 20584.0 9 21070.0 10 19372.0 11 17493.0 12 18976.0 13 25102.5 14 39302.5 15 59014.5 16 75357.0 17 85497.5 18 87648.0 19 81532.5 20 71532.0 21 61306.5 22 54863.0 23 55624.5 24 63540.5 25 78542.5 26 99633.5 27 123483.5 28 148129.5 29 175427.5 30 202723.5 31 229970.5 32 260833.0 33 291206.5 34 320630.5 35 347829.5 36 374978.0 37 398244.5 38 411349.0 39 421739.0 40 432843.5 41 440401.0 42 444717.0 43 448647.0 44 450188.5 45 449767.5 46 447805.0 47 444911.0 48 437813.0 49 425784.5 50 411573.0 51 390511.5 52 363546.5 53 336543.0 54 310529.0 55 283304.5 56 254614.0 57 225512.0 58 197790.5 59 171518.5 60 145040.0 61 118321.0 62 91603.0 63 69460.0 64 52228.5 65 38275.0 66 28107.0 67 20902.0 68 15428.0 69 10365.5 70 6797.5 71 4727.5 72 3142.5 73 2082.5 74 1408.0 75 955.5 76 665.0 77 432.5 78 268.0 79 170.0 80 113.5 81 79.0 82 57.5 83 40.5 84 25.5 85 15.0 86 13.0 87 11.0 88 9.5 89 9.5 90 6.0 91 2.5 92 2.5 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 9.31408125157408E-5 10-11 0.0016020219752707417 12-13 1.7231050315412048E-4 14-15 0.0012248016845819915 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 156.0 20-21 592.0 22-23 1279.0 24-25 3754.0 26-27 3967.0 28-29 9201.0 30-31 22865.0 32-33 29248.0 34-35 41421.0 36-37 59886.0 38-39 70468.0 40-41 78003.0 42-43 94807.0 44-45 115774.0 46-47 111827.0 48-49 100016.0 50-51 85091.0 52-53 79110.0 54-55 84798.0 56-57 91707.0 58-59 93342.0 60-61 94639.0 62-63 92281.0 64-65 96478.0 66-67 104359.0 68-69 103101.0 70-71 100734.0 72-73 96277.0 74-75 97568.0 76-77 97411.0 78-79 104613.0 80-81 106911.0 82-83 102491.0 84-85 101332.0 86-87 107256.0 88-89 114783.0 90-91 119893.0 92-93 123595.0 94-95 132855.0 96-97 339146.0 98-99 619847.0 100-101 6703550.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.98369951122187 #Duplication Level Percentage of deduplicated Percentage of total 1 89.18825209850586 75.79547616270524 2 7.729591877620545 13.137786269441712 3 1.7654917891497672 4.501140710959 4 0.6485232221173332 2.2045561053787535 5 0.2706948487336137 1.1502324842006542 6 0.1443380114195138 0.7359826914313962 7 0.07609646016923005 0.45268710934226575 8 0.04953091128945895 0.33674560652322927 9 0.031675418988844906 0.24227048603160417 >10 0.09367880314222633 1.2015471814962941 >50 0.001576900360301764 0.08911293336141404 >100 4.6429885637557953E-4 0.06831412658318418 >500 5.12161569040442E-5 0.03316631599643572 >1k 3.41434900689278E-5 0.05098181654879369 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 9.31408125157408E-6 0.0 3 0.0 0.0 0.0 9.31408125157408E-6 0.0 4 0.0 3.725632500629632E-5 0.0 1.862816250314816E-5 0.0 5 0.0 3.725632500629632E-5 0.0 2.794224375472224E-5 0.0 6 0.0 3.725632500629632E-5 0.0 2.794224375472224E-5 0.0 7 0.0 3.725632500629632E-5 0.0 2.794224375472224E-5 0.0 8 1.862816250314816E-5 3.725632500629632E-5 0.0 2.794224375472224E-5 0.0 9 1.862816250314816E-5 1.0245489376731488E-4 0.0 3.725632500629632E-5 0.0 10-11 1.862816250314816E-5 1.0245489376731488E-4 0.0 6.054152813523152E-5 0.0 12-13 1.862816250314816E-5 1.0245489376731488E-4 0.0 1.0245489376731488E-4 0.0 14-15 1.862816250314816E-5 1.2108305627046304E-4 0.0 1.397112187736112E-4 9.31408125157408E-6 16-17 1.862816250314816E-5 1.2108305627046304E-4 0.0 1.629964219025464E-4 1.862816250314816E-5 18-19 1.862816250314816E-5 1.397112187736112E-4 0.0 2.2819499066356497E-4 2.794224375472224E-5 20-21 2.7942243754722242E-5 1.4902530002518528E-4 0.0 3.120217219277317E-4 2.794224375472224E-5 22-23 4.1913365632083356E-5 1.6765346252833343E-4 0.0 5.169315094623614E-4 3.259928438050928E-5 24-25 4.65704062578704E-5 1.9559570628305568E-4 0.0 0.0017836465596764363 3.725632500629632E-5 26-27 4.65704062578704E-5 2.1422386878620382E-4 0.0 0.004447473797626623 3.725632500629632E-5 28-29 5.588448750944448E-5 2.1888090941199088E-4 0.0 0.012839461005294869 3.725632500629632E-5 30-31 6.054152813523151E-5 2.607942750440742E-4 0.0 0.015489317121367693 4.65704062578704E-5 32-33 6.519856876101856E-5 2.654513156698613E-4 0.0 0.02043509426595353 6.519856876101856E-5 34-35 6.519856876101856E-5 3.120217219277317E-4 0.0 0.027117947563957932 8.382673126416671E-5 36-37 6.519856876101856E-5 3.53935087559815E-4 0.0 0.03700018777187803 8.382673126416671E-5 38-39 6.519856876101856E-5 3.53935087559815E-4 0.0 0.06176632981981351 8.382673126416671E-5 40-41 9.31408125157408E-5 3.8187733131453725E-4 0.0 0.08831146138679963 9.31408125157408E-5 42-43 9.31408125157408E-5 3.8187733131453725E-4 0.0 0.10476478591770524 9.31408125157408E-5 44-45 1.0711193439310191E-4 4.005054938176854E-4 0.0 0.1260986890244357 9.31408125157408E-5 46-47 1.16426015644676E-4 4.191336563208336E-4 0.0 0.14580262791214066 9.779785314152784E-5 48-49 1.2108305627046304E-4 4.2844773757240765E-4 0.0 0.16500826345288638 1.2108305627046304E-4 50-51 1.629964219025464E-4 5.262455907139355E-4 0.0 0.18278418752151554 1.2108305627046304E-4 52-53 1.6765346252833343E-4 5.309026313397226E-4 0.0 0.22722632621340125 1.2108305627046304E-4 54-55 1.7231050315412048E-4 5.402167125912966E-4 0.0 0.2809872031974868 1.2108305627046304E-4 56-57 1.769675437799075E-4 5.588448750944448E-4 0.0 0.33494833292848125 1.2108305627046304E-4 58-59 1.769675437799075E-4 5.635019157202318E-4 0.0 0.37042566841572694 1.2108305627046304E-4 60-61 1.769675437799075E-4 6.007582407265282E-4 0.0 0.39413466224160876 1.2108305627046304E-4 62-63 1.8162458440569454E-4 6.240434438554634E-4 0.0 0.40849697553153597 1.2108305627046304E-4 64-65 2.0490978753462977E-4 7.264983376227782E-4 0.0 0.4140854242824804 1.2108305627046304E-4 66-67 2.235379500377779E-4 7.451265001259264E-4 0.0 0.4197530427240632 1.2108305627046304E-4 68-69 2.32852031289352E-4 7.637546626290746E-4 0.0 0.4255743435062971 1.2108305627046304E-4 70-71 2.5148019379250017E-4 7.870398657580098E-4 0.0 0.4307436586009207 1.2108305627046304E-4 72-73 2.5148019379250017E-4 8.010109876353708E-4 0.0 0.4347440564984717 1.397112187736112E-4 74-75 2.5148019379250017E-4 8.24296190764306E-4 0.0 0.43791084412400694 1.397112187736112E-4 76-77 2.5148019379250017E-4 8.941518001511117E-4 0.0 0.4412173429683157 1.397112187736112E-4 78-79 2.5148019379250017E-4 9.127799626542599E-4 0.0 0.44328972604679096 1.397112187736112E-4 80-81 2.561372344182872E-4 9.127799626542599E-4 0.0 0.44408607999380056 1.397112187736112E-4 82-83 2.607942750440742E-4 9.127799626542599E-4 0.0 0.4444865854876182 1.397112187736112E-4 84-85 2.607942750440742E-4 9.174370032800469E-4 0.0 0.4447147804782818 1.397112187736112E-4 86-87 2.607942750440742E-4 9.31408125157408E-4 0.0 0.4448312064939265 1.397112187736112E-4 88 2.607942750440742E-4 9.872926126668524E-4 0.0 0.44484983465642963 1.4902530002518528E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19445 0.0 54.10232 1 GTATCAA 36590 0.0 39.162796 1 ATCAACG 46035 0.0 30.689346 3 TCAACGC 46090 0.0 30.652727 4 TATCAAC 46685 0.0 30.397158 2 CAACGCA 46940 0.0 30.10802 5 AACGCAG 48385 0.0 29.208857 6 TGGTATC 7335 0.0 26.541006 2 GTGGTAT 7950 0.0 25.915852 1 ACGCAGA 55065 0.0 25.688404 7 CGCAGAG 55700 0.0 25.41855 8 GCAGAGT 63230 0.0 22.365294 9 GAGTACT 33620 0.0 20.611528 12-13 GTACATG 53590 0.0 20.533194 1 TACATGG 52730 0.0 20.485325 2 ACATGGG 53370 0.0 19.664547 3 CAGAGTA 62690 0.0 19.529425 10-11 AGAGTAC 60020 0.0 18.88488 10-11 GTACTTT 37470 0.0 18.46044 14-15 AGTACTT 36120 0.0 18.079 12-13 >>END_MODULE