##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139304_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9522820 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62560722559074 33.0 33.0 33.0 33.0 33.0 2 32.612203947990196 33.0 33.0 33.0 33.0 33.0 3 32.585187370967844 33.0 33.0 33.0 33.0 33.0 4 36.50786836252286 37.0 37.0 37.0 37.0 37.0 5 36.539173690146406 37.0 37.0 37.0 37.0 37.0 6 36.54547224456621 37.0 37.0 37.0 37.0 37.0 7 36.50878038228172 37.0 37.0 37.0 37.0 37.0 8 36.517823291840024 37.0 37.0 37.0 37.0 37.0 9 36.53387063915941 37.0 37.0 37.0 37.0 37.0 10-11 36.47182615023701 37.0 37.0 37.0 37.0 37.0 12-13 36.458168063661816 37.0 37.0 37.0 37.0 37.0 14-15 38.37580380601544 40.0 37.0 40.0 37.0 40.0 16-17 38.312005792401834 40.0 37.0 40.0 37.0 40.0 18-19 38.412118521614396 40.0 37.0 40.0 37.0 40.0 20-21 38.445054525573894 40.0 37.0 40.0 37.0 40.0 22-23 38.448268332980554 40.0 37.0 40.0 37.0 40.0 24-25 38.417414496059635 40.0 37.0 40.0 37.0 40.0 26-27 38.27764128636292 40.0 37.0 40.0 37.0 40.0 28-29 38.2238794052635 40.0 37.0 40.0 37.0 40.0 30-31 38.12289424010076 40.0 37.0 40.0 37.0 40.0 32-33 38.025397107553616 40.0 37.0 40.0 33.0 40.0 34-35 37.98242560867394 40.0 37.0 40.0 33.0 40.0 36-37 37.933347612352826 40.0 37.0 40.0 33.0 40.0 38-39 37.87383278050764 40.0 37.0 40.0 33.0 40.0 40-41 37.83602058273497 40.0 37.0 40.0 33.0 40.0 42-43 37.77975787558904 40.0 37.0 40.0 33.0 40.0 44-45 37.74111224496299 40.0 37.0 40.0 33.0 40.0 46-47 37.687909526228935 40.0 37.0 40.0 33.0 40.0 48-49 37.6831889648995 40.0 37.0 40.0 33.0 40.0 50-51 37.63432171469226 40.0 37.0 40.0 33.0 40.0 52-53 37.542613111316044 40.0 37.0 40.0 33.0 40.0 54-55 37.39277409418881 40.0 37.0 40.0 33.0 40.0 56-57 37.311047374594395 40.0 37.0 40.0 33.0 40.0 58-59 37.18553796658312 37.0 37.0 40.0 33.0 40.0 60-61 37.03737980969983 37.0 37.0 40.0 33.0 40.0 62-63 36.840751398713465 37.0 37.0 40.0 33.0 40.0 64-65 36.66517353998465 37.0 37.0 40.0 33.0 40.0 66-67 36.446755139113954 37.0 37.0 40.0 33.0 40.0 68-69 36.15335532601915 37.0 37.0 40.0 33.0 40.0 70-71 35.920733854452145 37.0 37.0 37.0 33.0 40.0 72-73 35.6097634673971 37.0 33.0 37.0 33.0 40.0 74-75 35.50202925830545 37.0 33.0 37.0 33.0 40.0 76-77 33.78892175247486 35.0 33.0 37.0 27.0 37.0 78-79 35.03969138347027 37.0 33.0 37.0 33.0 37.0 80-81 35.07940679246617 37.0 33.0 37.0 33.0 37.0 82-83 34.92877603096473 37.0 33.0 37.0 33.0 37.0 84-85 34.8158554267679 37.0 33.0 37.0 33.0 37.0 86-87 34.738170238103955 37.0 33.0 37.0 33.0 37.0 88-89 34.63641665507651 37.0 33.0 37.0 33.0 37.0 90-91 34.56330829012636 37.0 33.0 37.0 33.0 37.0 92-93 34.56329175158131 37.0 33.0 37.0 33.0 37.0 94-95 34.534018186464664 37.0 33.0 37.0 33.0 37.0 96-97 34.51869190199929 37.0 33.0 37.0 33.0 37.0 98-99 34.5436751936986 37.0 33.0 37.0 33.0 37.0 100 34.44149200476541 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 0.0 9 2.0 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 2.0 17 5.0 18 9.0 19 43.0 20 127.0 21 488.0 22 1599.0 23 4259.0 24 9231.0 25 17684.0 26 30522.0 27 48561.0 28 71966.0 29 101322.0 30 138269.0 31 184168.0 32 243427.0 33 327802.0 34 455259.0 35 663833.0 36 1168607.0 37 2892882.0 38 3059821.0 39 102929.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.65538779479188 20.297359395641205 14.703155157820897 21.344097651746015 2 15.32367512984599 21.51564347535709 41.90612654654819 21.254554848248734 3 18.11561071195297 28.70269521003232 30.33664397730924 22.845050100705464 4 12.070888665332328 18.410722874106618 39.188822218628516 30.329566241932536 5 12.197647335558164 39.15909362982814 34.75549259568069 13.887766438933005 6 27.72142075561651 38.655849842798666 18.999424540209727 14.623304861375097 7 26.41914894957586 33.964760438609574 22.728088948441744 16.888001663372826 8 25.527805839026673 35.133227342320865 20.800687191399188 18.53827962725327 9 27.74023863984571 15.82805144956285 21.064503913869046 35.3672059967224 10-11 24.57646866341716 27.327771028971696 27.590921959718866 20.504838347892274 12-13 26.13892423679501 25.964248757876096 27.83402931196091 20.06279769336798 14-15 23.44411299037761 26.140158759812227 27.239785367302318 23.175942882507847 16-17 20.695497762217492 29.42560607047072 27.906134947421034 21.972761219890746 18-19 20.615489949405745 27.490381000585963 31.46544826007422 20.428680789934074 20-21 22.47480041957526 26.270856197736347 31.48896355431237 19.76537982837602 22-23 22.084673995905515 26.330119355021793 31.328711517958695 20.256495131114 24-25 21.27455740087215 27.051854195750092 31.534368221365238 20.139220182012515 26-27 20.803829423165123 27.16654000466977 31.61433326359274 20.415297308572363 28-29 20.509231297229512 26.774359851105658 31.946407461116422 20.770001390548412 30-31 21.08807507655967 26.955401158276132 31.508001009922577 20.448522755241623 32-33 20.746794858836324 27.43733618929894 31.151409019400976 20.66445993246376 34-35 20.971309310836904 27.334982331701944 31.352228575731317 20.34147978172983 36-37 21.150434732259598 27.166811420322873 30.895433998392225 20.787319849025305 38-39 20.700619218966526 27.711464495993273 30.73193172786074 20.855984557179465 40-41 21.01926754265066 27.25625172075204 31.124313131715798 20.6001676048815 42-43 20.951790262877882 27.435033107308243 30.177709415707575 21.435467214106293 44-45 20.884067590658134 27.86729473290559 29.808852660065828 21.439785016370454 46-47 21.37522781543913 27.810457324805775 29.21455545722195 21.599759402533145 48-49 21.222316159517252 28.583419424128092 28.406264110920503 21.788000305434153 50-51 21.467134698072833 28.641146267503835 27.527420426644543 22.364298607778785 52-53 21.40465934277932 28.582818380315018 27.469034583739422 22.543487693166245 54-55 21.878288267668484 28.255198895361623 27.822258126511894 22.044254710458002 56-57 21.43901799564097 28.113731162651952 27.620579443318643 22.826671398388438 58-59 21.038621049196493 27.705915349407164 28.02207818899062 23.233385412405728 60-61 21.751268730157054 28.59407786878863 27.813824014654138 21.84082938640018 62-63 20.879052237598138 28.509776726599533 28.266501927193328 22.344669108609 64-65 20.688557870616535 28.65979411126084 27.798653934877947 22.852994083244678 66-67 20.846676510661123 29.549209299848535 27.07445699000744 22.529657199482905 68-69 20.994456098937313 29.60408706552314 26.974429287567343 22.42702754797221 70-71 21.16783477332032 28.828302350938344 27.065369384230202 22.938493491511135 72-73 21.50820090139814 28.215452505548182 26.685441491931357 23.59090510112232 74-75 21.303137646048036 28.409219185034285 27.033733174787315 23.25390999413036 76-77 21.734667883407358 27.982182714135522 26.724602012303304 23.558547390153816 78-79 22.21207115158838 27.758094594878173 26.001290562711848 24.028543690821596 80-81 21.769385092186656 28.78274029703856 26.086393901111897 23.361480709662885 82-83 22.05226917517497 28.10460050801057 26.26610949071919 23.577020826095268 84-85 21.853171114321256 28.594825405110168 26.08132354266574 23.470679937902833 86-87 22.455707318580014 28.61217122948643 26.614192339346403 22.317929112587144 88-89 22.35391073061818 28.51336838882956 26.915782220540592 22.216938660011675 90-91 22.463279295459607 27.8867550195396 26.75127580821495 22.89868987678585 92-93 22.3493356972854 27.413001436284045 27.006269015862145 23.231393850568406 94-95 21.310883581915142 27.48109757753372 28.078727878032023 23.129290962519118 96-97 21.71000139210125 27.42753229257347 28.088306081958198 22.774160233367084 98-99 22.701434282074032 29.13802167788731 28.659633175113196 19.50091086492546 100 29.64887021039251 40.265380324918034 30.08574946468946 0.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 9090.0 1 7160.0 2 6641.0 3 8654.0 4 12636.0 5 21864.5 6 29104.0 7 31628.5 8 31126.0 9 27871.5 10 23826.0 11 21812.0 12 25233.0 13 39106.5 14 69035.0 15 110670.0 16 146595.5 17 165761.5 18 168955.5 19 152495.0 20 126981.0 21 100726.5 22 76699.0 23 62365.0 24 56155.0 25 58130.5 26 66139.5 27 76153.0 28 87683.0 29 105438.0 30 131093.5 31 155871.0 32 198087.0 33 256568.5 34 291045.5 35 325229.5 36 376239.0 37 404004.0 38 421238.5 39 420522.0 40 409751.5 41 393620.5 42 371784.0 43 378775.0 44 386754.5 45 380439.0 46 362038.5 47 347662.5 48 349112.5 49 346239.5 50 336905.5 51 327781.5 52 317227.0 53 305745.5 54 290072.0 55 270632.0 56 248849.5 57 224295.5 58 200657.5 59 175905.5 60 151789.5 61 126681.5 62 98382.5 63 75135.5 64 57573.5 65 45258.5 66 36218.5 67 28224.5 68 21918.5 69 14157.0 70 7668.5 71 5495.0 72 3941.0 73 2715.5 74 1850.5 75 1283.5 76 868.0 77 564.5 78 389.5 79 287.5 80 208.0 81 156.0 82 123.5 83 90.5 84 61.5 85 42.5 86 30.0 87 27.5 88 24.0 89 18.0 90 13.0 91 7.5 92 4.0 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.890196391405067E-4 10-11 0.0015541614773774994 12-13 1.890196391405067E-4 14-15 0.0013966451114270772 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4244.0 20-21 10946.0 22-23 8170.0 24-25 17386.0 26-27 14555.0 28-29 16011.0 30-31 41924.0 32-33 46127.0 34-35 61733.0 36-37 82984.0 38-39 72259.0 40-41 112881.0 42-43 133260.0 44-45 160422.0 46-47 148740.0 48-49 126805.0 50-51 123159.0 52-53 23747.0 54-55 20475.0 56-57 23094.0 58-59 60821.0 60-61 104268.0 62-63 95955.0 64-65 99565.0 66-67 108122.0 68-69 113851.0 70-71 111704.0 72-73 103821.0 74-75 102497.0 76-77 102332.0 78-79 113057.0 80-81 115358.0 82-83 109158.0 84-85 108483.0 86-87 111288.0 88-89 116585.0 90-91 123185.0 92-93 125953.0 94-95 139771.0 96-97 279787.0 98-99 1919449.0 100-101 4008888.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.63546569093162 #Duplication Level Percentage of deduplicated Percentage of total 1 88.88196731336583 74.33684727779514 2 7.830222000475868 13.097685269463549 3 1.8232154506230418 4.574564198032795 4 0.6885163973758079 2.303375581214729 5 0.3097267475119567 1.295207038255005 6 0.15658916850686716 0.7857844818136559 7 0.09381416439271226 0.5492333929173073 8 0.05504436150498812 0.3682928646503737 9 0.035854626369844406 0.2698846536254665 >10 0.11956929305997123 1.5216661370571871 >50 0.0035350158911492133 0.19792269655689604 >100 0.001551586359806493 0.24842525064042387 >500 1.865736981115836E-4 0.11127481571795389 >1k 2.0730086420448404E-4 0.339836342259557 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0501091063361484E-5 0.0 2 0.0 0.0 0.0 1.0501091063361484E-5 0.0 3 0.0 0.0 0.0 2.1002182126722967E-5 0.0 4 0.0 0.0 0.0 3.150327319008445E-5 0.0 5 0.0 0.0 0.0 3.150327319008445E-5 0.0 6 0.0 0.0 0.0 3.150327319008445E-5 0.0 7 0.0 0.0 0.0 3.150327319008445E-5 0.0 8 0.0 0.0 0.0 3.150327319008445E-5 0.0 9 0.0 0.0 0.0 8.400872850689187E-5 0.0 10-11 0.0 5.250545531680742E-6 0.0 1.522658204187415E-4 0.0 12-13 0.0 1.0501091063361484E-5 0.0 2.6252727658403706E-4 0.0 14-15 0.0 3.150327319008445E-5 0.0 2.887800042424408E-4 0.0 16-17 0.0 3.150327319008445E-5 0.0 4.2529418806614013E-4 0.0 18-19 0.0 3.6753818721765193E-5 0.0 0.0018639436637466634 0.0 20-21 0.0 4.2004364253445934E-5 0.0 0.0030978218636916375 0.0 22-23 0.0 4.2004364253445934E-5 0.0 0.004567974612562245 0.0 24-25 1.0501091063361484E-5 4.7254909785126675E-5 0.0 0.008831417584287009 0.0 26-27 1.0501091063361484E-5 5.2505455316807416E-5 0.0 0.018224643540463853 0.0 28-29 1.0501091063361484E-5 5.2505455316807416E-5 0.0 0.052988505505722046 0.0 30-31 1.0501091063361484E-5 5.2505455316807416E-5 0.0 0.12030574976740083 0.0 32-33 1.0501091063361484E-5 5.2505455316807416E-5 0.0 0.1354430725352364 0.0 34-35 1.0501091063361484E-5 7.350763744353039E-5 0.0 0.15284863097275808 0.0 36-37 1.0501091063361484E-5 1.1026145616529558E-4 0.0 0.18380059688201605 0.0 38-39 1.0501091063361484E-5 1.3126363829201853E-4 0.0 0.41250910969649746 0.0 40-41 1.0501091063361484E-5 1.4701527488706077E-4 0.0 0.6544647488874094 0.0 42-43 1.0501091063361484E-5 1.4701527488706077E-4 0.0 0.7102360435249222 0.0 44-45 1.0501091063361484E-5 1.4701527488706077E-4 0.0 0.7816067089370585 0.0 46-47 1.0501091063361484E-5 1.5751636595042224E-4 0.0 0.8553873747482363 0.0 48-49 1.0501091063361484E-5 1.5751636595042224E-4 0.0 0.9278501536309622 0.0 50-51 1.0501091063361484E-5 1.6801745701378374E-4 0.0 0.9977769190218864 0.0 52-53 1.0501091063361484E-5 1.6801745701378374E-4 0.0 1.6329879174446225 0.0 54-55 1.0501091063361484E-5 1.785185480771452E-4 0.0 2.4012844934588706 0.0 56-57 1.0501091063361484E-5 1.890196391405067E-4 0.0 3.2338634984174854 0.0 58-59 1.0501091063361484E-5 1.9427018467218745E-4 0.0 4.1334604665424735 0.0 60-61 1.0501091063361484E-5 1.9952073020386817E-4 0.0 4.394664605652527 0.0 62-63 1.0501091063361484E-5 2.1002182126722967E-4 0.0 4.405092189078445 0.0 64-65 1.0501091063361484E-5 2.1002182126722967E-4 0.0 4.4134615586559445 0.0 66-67 1.0501091063361484E-5 2.2052291233059116E-4 0.0 4.419420927834402 0.0 68-69 1.0501091063361484E-5 2.2052291233059116E-4 0.0 4.425616571561785 0.0 70-71 1.0501091063361484E-5 2.2577345786227188E-4 0.0 4.431770210924915 0.0 72-73 1.0501091063361484E-5 2.3627454892563338E-4 0.0 4.436763479725544 0.0 74-75 1.0501091063361484E-5 2.4152509445731412E-4 0.0 4.440381105596872 0.0 76-77 1.0501091063361484E-5 2.4152509445731412E-4 0.0 4.44387271837544 0.0 78-79 1.0501091063361484E-5 2.4152509445731412E-4 0.0 4.446697511871484 0.0 80-81 1.0501091063361484E-5 2.572767310523563E-4 0.0 4.447563851884211 0.0 82-83 1.0501091063361484E-5 2.7302836764739856E-4 0.0 4.448199167893544 0.0 84-85 1.0501091063361484E-5 2.7302836764739856E-4 0.0 4.448487947897787 0.0 86-87 1.0501091063361484E-5 2.7302836764739856E-4 0.0 4.44856145553523 0.0 88 1.0501091063361484E-5 2.7302836764739856E-4 0.0 4.448566706080761 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 30100 0.0 60.9027 1 ATCTCGT 13030 0.0 57.708115 94 TGGTATC 9560 0.0 39.64254 2 GTATCAA 59215 0.0 38.675064 1 TATCTCG 15865 0.0 37.261345 94 GTGGTAT 10840 0.0 35.561054 1 TGCGTAT 1965 0.0 29.888044 94 ACCGAAC 2585 0.0 29.54275 8 TATCAAC 77790 0.0 29.189438 2 TCAACGC 78410 0.0 28.91216 4 CCGAACC 2630 0.0 28.883574 9 ATCAACG 78920 0.0 28.720177 3 CAACGCA 79795 0.0 28.420813 5 GACCGAA 2690 0.0 28.08714 7 GCCGTCT 7700 0.0 27.908556 90-91 AACGCAG 82180 0.0 27.620707 6 TTAGCCG 1535 0.0 27.597807 94 CCGTCTT 7610 0.0 27.166788 90-91 TGCCGTC 7455 0.0 26.9946 88-89 AGGACCG 3185 0.0 26.655165 5 >>END_MODULE