##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139303_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17479933 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.636691227592234 18.0 18.0 30.0 18.0 33.0 2 30.390983592442833 32.0 28.0 33.0 27.0 33.0 3 32.019595670074935 33.0 32.0 33.0 30.0 33.0 4 32.3786040827502 33.0 33.0 33.0 31.0 34.0 5 32.8427297175567 33.0 33.0 34.0 32.0 34.0 6 36.726067828749684 38.0 37.0 38.0 34.0 38.0 7 36.98779817977563 38.0 38.0 38.0 35.0 38.0 8 37.04645750072383 38.0 38.0 38.0 36.0 38.0 9 37.17654930370728 38.0 38.0 38.0 36.0 38.0 10-11 37.20601346126441 38.0 38.0 38.0 36.0 38.0 12-13 37.22186538129179 38.0 38.0 38.0 36.0 38.0 14-15 37.213180107726956 38.0 38.0 38.0 36.0 38.0 16-17 37.169850708237846 38.0 38.0 38.0 36.0 38.0 18-19 37.19374124603338 38.0 38.0 38.0 36.0 38.0 20-21 37.209613799147576 38.0 38.0 38.0 36.0 38.0 22-23 37.21200642951875 38.0 38.0 38.0 36.0 38.0 24-25 37.21448112348464 38.0 38.0 38.0 36.0 38.0 26-27 37.18209212753872 38.0 38.0 38.0 36.0 38.0 28-29 37.15254010772529 38.0 38.0 38.0 36.0 38.0 30-31 37.15208007720412 38.0 38.0 38.0 36.0 38.0 32-33 37.14079628257949 38.0 38.0 38.0 36.0 38.0 34-35 37.11461802463264 38.0 38.0 38.0 36.0 38.0 36-37 37.09383207977804 38.0 38.0 38.0 36.0 38.0 38-39 37.07105338203929 38.0 38.0 38.0 36.0 38.0 40-41 37.05216570408119 38.0 38.0 38.0 36.0 38.0 42-43 37.02143388334075 38.0 38.0 38.0 36.0 38.0 44-45 36.96120997384621 38.0 38.0 38.0 36.0 38.0 46-47 36.922301459951356 38.0 38.0 38.0 36.0 38.0 48-49 36.881286538934944 38.0 38.0 38.0 36.0 38.0 50-51 36.83652795207358 38.0 38.0 38.0 35.0 38.0 52-53 36.81050303176794 38.0 38.0 38.0 35.0 38.0 54-55 36.78155418850933 38.0 38.0 38.0 35.0 38.0 56-57 36.780426801046886 38.0 38.0 38.0 35.0 38.0 58-59 36.763988882524785 38.0 38.0 38.0 35.0 38.0 60-61 36.77359221778436 38.0 38.0 38.0 35.0 38.0 62-63 36.7599733673618 38.0 38.0 38.0 35.0 38.0 64-65 36.75218157235002 38.0 38.0 38.0 35.0 38.0 66-67 36.74222033451974 38.0 38.0 38.0 35.0 38.0 68-69 36.74931372980552 38.0 38.0 38.0 35.0 38.0 70-71 36.72722524170543 38.0 38.0 38.0 35.0 38.0 72-73 36.70939021972667 38.0 38.0 38.0 34.5 38.0 74-75 36.72337945935179 38.0 38.0 38.0 35.0 38.0 76-77 36.69914474789363 38.0 38.0 38.0 34.5 38.0 78-79 36.67334731346146 38.0 38.0 38.0 34.0 38.0 80-81 36.66273505454101 38.0 38.0 38.0 34.0 38.0 82-83 36.60251973776137 38.0 38.0 38.0 34.0 38.0 84-85 36.59687190551332 38.0 38.0 38.0 34.0 38.0 86-87 36.583069644111646 38.0 38.0 38.0 34.0 38.0 88-89 36.55506649387226 38.0 38.0 38.0 34.0 38.0 90-91 36.52998152284337 38.0 38.0 38.0 34.0 38.0 92-93 36.53112698454724 38.0 38.0 38.0 34.0 38.0 94-95 36.47146674196932 38.0 38.0 38.0 34.0 38.0 96-97 36.43396707087936 38.0 38.0 38.0 34.0 38.0 98-99 36.455298473666446 38.0 38.0 38.0 34.0 38.0 100 34.70045435882488 38.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 57.0 19 107.0 20 269.0 21 661.0 22 2114.0 23 5838.0 24 13288.0 25 25683.0 26 44620.0 27 70762.0 28 106567.0 29 152406.0 30 205035.0 31 266105.0 32 342277.0 33 451544.0 34 651722.0 35 1105143.0 36 3076782.0 37 1.0958945E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.33041385227278 18.61662742071151 22.667220749644752 22.385737977370965 2 13.474752206417268 22.641358421205954 42.63263618778329 21.25125318459349 3 17.16222253254632 28.44733443772353 31.608313372825858 22.78212965690429 4 10.957690741720807 19.842169875593918 41.29726355358456 27.902875829100722 5 11.733341129118395 38.84933182703815 37.00455120906848 12.412775834774973 6 26.451158040263227 40.80694538687508 20.340071369895938 12.401825202965759 7 24.261208552687243 34.040250611944565 24.9247007983383 16.773840037029892 8 23.379992360382616 37.35935944376904 22.421418892166233 16.839229303682114 9 25.695521830661477 16.3854232164391 21.902658322546202 36.01639663035321 10-11 22.888594595871734 27.708993507011726 30.2529792305268 19.149432666589743 12-13 24.329235129219317 25.571402361782507 30.20810777707214 19.89125473192603 14-15 21.3937919556099 26.512910547197176 28.264284537017392 23.829012960175532 16-17 20.309951988946413 29.756412681902155 28.713656968822477 21.219978360328955 18-19 20.356662694302088 28.692773021498425 30.866333984232092 20.0842302999674 20-21 21.740446132256114 27.670348870138113 30.550233787215593 20.038971210390187 22-23 21.26518027552059 27.736777855115612 30.413517174687172 20.58452469467663 24-25 20.72282933346021 27.9362137851977 30.640326362341014 20.700630519001074 26-27 20.75795232418326 28.0363001451968 30.511928110714116 20.69381941990582 28-29 20.628083733544297 28.094215708688342 30.608761572350996 20.668938985416364 30-31 20.942605549532146 27.96560944196872 30.486124937607066 20.605660070892068 32-33 20.72624208662746 28.091640126108793 30.452623669049384 20.72949411821436 34-35 20.778548704734735 28.169439704107052 30.540577598164397 20.51143399299382 36-37 20.776236426264745 28.095289031453852 30.42756750132322 20.700907040958185 38-39 20.66243006823041 28.113902316698347 30.527510671400982 20.696156943670257 40-41 20.833558756340032 28.030050898933425 30.42147829823883 20.71491204648772 42-43 20.841381480069245 28.079947970057162 30.21001777364566 20.86865277622794 44-45 20.885347730307636 28.310024953293794 29.9700523176411 20.83457499875747 46-47 20.94343816689849 28.302998649207602 29.653384830551182 21.100178353342727 48-49 21.024790428718283 28.393566694439144 29.546702958925668 21.03493991791691 50-51 20.971036436599984 28.50202549489447 29.380217618409215 21.146720450096335 52-53 21.04006052492375 28.5220732787398 29.366683939845238 21.071182256491205 54-55 21.081787791504507 28.509578555876963 29.316187944465344 21.092445708153182 56-57 21.161364607032972 28.525181083286412 29.19332952078107 21.120124788899545 58-59 21.053522332376073 28.582810025721262 29.30645916612797 21.057208475774694 60-61 21.142316553830316 28.607767274781647 29.22566870787271 21.024247463515326 62-63 21.060591478858925 28.64240033492121 29.225522086717614 21.07148609950225 64-65 21.01540462540261 28.607345235396647 29.277745767339418 21.099504371861325 66-67 21.139310904665336 28.635001154810407 29.117714493980458 21.107973446543795 68-69 21.139037068761255 28.554415315786567 29.18865829165467 21.11788932379751 70-71 21.120435753439995 28.36357340291013 29.266631554753157 21.24935928889672 72-73 21.156725800804164 28.397160498689573 29.242061990050004 21.204051710456255 74-75 21.11135690823218 28.47230910747506 29.17560115696571 21.24073282732705 76-77 21.17612777473763 28.477270449213567 29.09370648599154 21.252895290057268 78-79 21.186547644902305 28.49871995383606 29.020873000914506 21.29385940034713 80-81 21.197617694418312 28.50959683504708 28.999715741591686 21.293069728942925 82-83 21.23698121928113 28.4975836078109 29.08612316415034 21.179312008757638 84-85 21.337019062599925 28.505890957754975 28.94696596009261 21.21012401955249 86-87 21.159255769513287 28.576744533885297 28.998093222195507 21.265906474405906 88-89 21.280587767245667 28.533364500334496 28.919586093344236 21.266461639075597 90-91 21.329083638010964 28.521436472846943 28.94300894043021 21.206470948711882 92-93 21.286256772610333 28.539322662540272 28.926673225935005 21.24774733891439 94-95 21.181098568935973 28.614470314942636 28.95594738396681 21.24848373215459 96-97 21.27814417317223 28.778680517178245 28.974342864117524 20.968832445531994 98-99 22.214946063088775 30.631094013575122 29.318238898071712 17.835721025264387 100 21.156385343617345 31.57108670367142 23.35189376795777 23.920634184753464 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2901.0 1 4362.5 2 8409.5 3 11379.5 4 14017.5 5 18456.0 6 21528.5 7 27159.5 8 31459.0 9 30710.0 10 29414.5 11 28972.0 12 32454.0 13 41902.0 14 63069.5 15 88769.0 16 103934.5 17 105435.5 18 97046.5 19 85071.0 20 74443.5 21 68651.0 22 71369.5 23 84814.5 24 108222.5 25 140087.5 26 181074.5 27 228711.0 28 277690.0 29 327918.0 30 376803.0 31 423316.5 32 469552.0 33 512763.5 34 557078.0 35 598561.0 36 636243.0 37 672337.5 38 697453.5 39 714533.0 40 729192.0 41 737357.0 42 739058.5 43 744784.0 44 747683.5 45 742976.0 46 731339.5 47 712282.0 48 691196.5 49 661199.5 50 625223.5 51 586649.5 52 540969.0 53 491078.0 54 441356.0 55 394044.5 56 349244.5 57 304901.0 58 262231.5 59 221873.5 60 181971.0 61 142702.0 62 108133.5 63 81526.5 64 60399.0 65 43866.5 66 31434.5 67 22604.5 68 16239.5 69 11312.5 70 7916.5 71 5456.0 72 3744.5 73 2578.5 74 1683.5 75 1031.0 76 638.5 77 386.0 78 234.5 79 141.0 80 94.0 81 65.5 82 50.5 83 34.5 84 20.0 85 14.0 86 10.5 87 8.0 88 5.5 89 2.5 90 2.0 91 1.5 92 2.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0026601932627544965 3 0.0 4 0.0 5 0.0022997799819942104 6 8.00918401689526E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.4303571681948982E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 2.583254785644532E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 2.919671884937833E-6 42-43 0.0 44-45 0.0 46-47 1.4934461757368581E-5 48-49 3.797003513313108E-4 50-51 0.0015196033543481307 52-53 0.0039838393916833414 54-55 0.005529105312125704 56-57 0.006387677995163882 58-59 0.007929120675861712 60-61 0.007408772852361443 62-63 0.005388104326692357 64-65 0.0032767145304477704 66-67 0.0010871730982123056 68-69 5.779109505178931E-4 70-71 1.945041500757099E-4 72-73 5.493304394383833E-4 74-75 1.678941801933691E-5 76-77 2.742898846529764E-4 78-79 2.1184852393174185E-4 80-81 7.590338920018287E-5 82-83 1.3938175827300427E-5 84-85 1.3011252553194572E-4 86-87 1.1707368575208986E-4 88-89 1.7903834779402197E-5 90-91 1.4470986847139168E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 193.0 20-21 1101.0 22-23 2134.0 24-25 1886.0 26-27 4503.0 28-29 12129.0 30-31 29582.0 32-33 37394.0 34-35 49984.0 36-37 80408.0 38-39 109118.0 40-41 105776.0 42-43 119271.0 44-45 147858.0 46-47 150728.0 48-49 142789.0 50-51 128431.0 52-53 113561.0 54-55 118577.0 56-57 126022.0 58-59 131493.0 60-61 134724.0 62-63 122511.0 64-65 123768.0 66-67 136286.0 68-69 144442.0 70-71 153169.0 72-73 131051.0 74-75 123971.0 76-77 129649.0 78-79 139263.0 80-81 144577.0 82-83 133920.0 84-85 124688.0 86-87 127409.0 88-89 139479.0 90-91 147964.0 92-93 146824.0 94-95 166122.0 96-97 508693.0 98-99 1175936.0 100-101 1.1712549E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.76609041660589 #Duplication Level Percentage of deduplicated Percentage of total 1 88.50366985619546 73.25102741519311 2 7.764423821461876 12.852620080799246 3 1.9898510970226841 4.940765874352857 4 0.7726070699969673 2.557826664475118 5 0.3761722963484042 1.5567155145897145 6 0.20051423916090713 0.9957467788925147 7 0.1106469970345713 0.6410473552622477 8 0.07599662347224662 0.5031954727728575 9 0.05232538233260011 0.3897690592701108 >10 0.14937304729081247 1.8659514108356676 >50 0.002982523473201134 0.17381216642507463 >100 0.0013598718311247484 0.21084617521934407 >500 3.861246784090648E-5 0.02118507130821927 >1k 3.8561911320055205E-5 0.03949096060389212 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1441691452707514E-5 2 5.720845726353757E-6 0.0 0.0 0.0 1.1441691452707514E-5 3 5.720845726353757E-6 0.0 0.0 1.1441691452707514E-5 1.1441691452707514E-5 4 5.720845726353757E-6 1.716253717906127E-5 0.0 4.0045920084476294E-5 1.1441691452707514E-5 5 2.2883382905415028E-5 1.716253717906127E-5 0.0 4.0045920084476294E-5 1.1441691452707514E-5 6 2.2883382905415028E-5 1.716253717906127E-5 0.0 4.0045920084476294E-5 1.716253717906127E-5 7 2.2883382905415028E-5 1.716253717906127E-5 0.0 5.148761153718381E-5 1.716253717906127E-5 8 2.2883382905415028E-5 2.2883382905415028E-5 0.0 5.148761153718381E-5 1.716253717906127E-5 9 2.2883382905415028E-5 3.432507435812254E-5 0.0 1.315794517061364E-4 2.2883382905415028E-5 10-11 2.8604228631768783E-5 3.432507435812254E-5 0.0 1.5446283461155143E-4 2.2883382905415028E-5 12-13 2.8604228631768783E-5 3.432507435812254E-5 0.0 1.6304410320108206E-4 2.2883382905415028E-5 14-15 4.290634294765317E-5 4.0045920084476294E-5 0.0 1.945087546960277E-4 2.2883382905415028E-5 16-17 6.0068880126714444E-5 4.0045920084476294E-5 0.0 2.231129833277965E-4 2.2883382905415028E-5 18-19 6.292930298989132E-5 5.148761153718381E-5 0.0 2.374150976436809E-4 2.8604228631768783E-5 20-21 7.437099444259883E-5 6.292930298989132E-5 0.0 2.517172119595653E-4 2.8604228631768783E-5 22-23 8.295226303212947E-5 7.723141730577572E-5 0.0 2.7746101772815716E-4 4.0045920084476294E-5 24-25 1.0869606880072138E-4 9.725437734801387E-5 0.0 2.9462355490721847E-4 4.0045920084476294E-5 26-27 1.2585860597978264E-4 1.0297522307436762E-4 0.0 3.3466947499169474E-4 4.0045920084476294E-5 28-29 1.315794517061364E-4 1.0297522307436762E-4 0.0 4.6624892669783116E-4 4.0045920084476294E-5 30-31 1.315794517061364E-4 1.2013776025342889E-4 0.0 0.001058356459375445 4.0045920084476294E-5 32-33 1.3730029743249015E-4 1.2013776025342889E-4 0.0 0.0020795274215295906 4.5766765810830056E-5 34-35 1.430211431588439E-4 1.3730029743249015E-4 0.0 0.003363857287096009 4.5766765810830056E-5 36-37 1.4874198888519766E-4 1.4874198888519766E-4 0.0 0.005120156925086612 4.5766765810830056E-5 38-39 1.4874198888519766E-4 1.5446283461155143E-4 0.0 0.008278063766033886 4.862718867400693E-5 40-41 1.5446283461155143E-4 1.716253717906127E-4 0.0 0.012125332517006787 5.148761153718381E-5 42-43 1.573232574747283E-4 1.7734621751696645E-4 0.0 0.015569281644271748 5.148761153718381E-5 44-45 1.6304410320108206E-4 1.9164833183285085E-4 0.0 0.019399387858065588 5.148761153718381E-5 46-47 1.7162537179061268E-4 2.0022960042238147E-4 0.0 0.023827322450263394 5.148761153718381E-5 48-49 1.7734621751696645E-4 2.0022960042238147E-4 0.0 0.02845834706574676 5.7208457263537566E-5 50-51 1.7734621751696645E-4 2.3455467478050403E-4 0.0 0.03319806775003085 5.7208457263537566E-5 52-53 1.7734621751696645E-4 2.3455467478050403E-4 0.0 0.037777604753977026 6.865014871624508E-5 54-55 1.7734621751696645E-4 2.3455467478050403E-4 0.0 0.04215119131177448 8.009184016895259E-5 56-57 1.7734621751696645E-4 2.3455467478050403E-4 0.0 0.046295944040517775 8.009184016895259E-5 58-59 1.7734621751696645E-4 2.459963662332115E-4 0.0 0.050629484678230745 8.009184016895259E-5 60-61 1.8306706324332022E-4 2.517172119595653E-4 0.0 0.055071721384744435 8.581268589530636E-5 62-63 1.8306706324332022E-4 2.5743805768591905E-4 0.0 0.05956830612565849 8.581268589530636E-5 64-65 1.8306706324332022E-4 3.032048234967491E-4 0.0 0.06355859601979023 8.581268589530636E-5 66-67 1.8878790896967396E-4 3.117860920862798E-4 0.0 0.06767188409703859 8.581268589530636E-5 68-69 1.9450875469602773E-4 3.2036736067581035E-4 0.0 0.07174512625420246 8.581268589530636E-5 70-71 1.9736917755920462E-4 3.260882064021641E-4 0.0 0.07573255572547102 9.153353162166011E-5 72-73 2.0022960042238147E-4 3.318090521285179E-4 0.0 0.0789905773666295 1.0297522307436762E-4 74-75 2.0022960042238147E-4 3.461111664444023E-4 0.0 0.08139905341742443 1.0297522307436762E-4 76-77 2.0022960042238147E-4 3.7471539507617107E-4 0.0 0.08363876451929192 1.0297522307436762E-4 78-79 2.0595044614873524E-4 3.7757581793934793E-4 0.0 0.08496886115066918 1.0297522307436762E-4 80-81 2.0595044614873524E-4 3.7757581793934793E-4 0.0 0.0855352248775782 1.0297522307436762E-4 82-83 2.088108690119121E-4 3.7757581793934793E-4 0.0 0.08598431126709696 1.0869606880072138E-4 84-85 2.1739213760144275E-4 3.7757581793934793E-4 0.0 0.0862388889019197 1.0869606880072138E-4 86-87 2.1739213760144275E-4 3.8901750939205547E-4 0.0 0.08636474750789949 1.0869606880072138E-4 88 2.1739213760144275E-4 4.2906342947653174E-4 0.0 0.08637332877648901 1.0869606880072138E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 26575 0.0 49.842224 1 GTATCAA 52615 0.0 35.964756 1 ATCAACG 69400 0.0 30.935505 3 TCAACGC 70350 0.0 30.554325 4 CAACGCA 71295 0.0 30.137306 5 TATCAAC 72820 0.0 29.748526 2 AACGCAG 73405 0.0 29.323006 6 ACGCAGA 82080 0.0 26.202974 7 CGCAGAG 83290 0.0 25.817162 8 GCAGAGT 95975 0.0 22.391508 9 TACATGG 82490 0.0 21.894743 2 ACATGGG 82445 0.0 21.323507 3 GTACATG 80885 0.0 20.171556 1 AGAGTAC 90480 0.0 19.863111 10-11 TGGTATC 11330 0.0 19.642204 2 GAGTACT 50700 0.0 19.527489 12-13 CAGAGTA 95680 0.0 19.16227 10-11 CATGGGG 45225 0.0 18.744213 4 TTATCAA 16510 0.0 18.673882 1 AGTACTT 54920 0.0 17.991882 12-13 >>END_MODULE