##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139302_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8159573 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.85231494344128 33.0 33.0 33.0 33.0 33.0 2 32.90382499182249 33.0 33.0 33.0 33.0 33.0 3 33.57405810328555 33.0 33.0 33.0 33.0 37.0 4 36.719353696572114 37.0 37.0 37.0 37.0 37.0 5 36.746940434260466 37.0 37.0 37.0 37.0 37.0 6 36.75328059446248 37.0 37.0 37.0 37.0 37.0 7 36.74506092414395 37.0 37.0 37.0 37.0 37.0 8 36.723206349155774 37.0 37.0 37.0 37.0 37.0 9 36.727270654971775 37.0 37.0 37.0 37.0 37.0 10-11 36.703825249188895 37.0 37.0 37.0 37.0 37.0 12-13 36.96007603584158 37.0 37.0 37.0 37.0 38.5 14-15 38.899910081079 40.0 38.5 40.0 37.0 40.0 16-17 38.84384807881491 40.0 37.0 40.0 37.0 40.0 18-19 38.92041648502931 40.0 40.0 40.0 37.0 40.0 20-21 38.97835170854904 40.0 40.0 40.0 37.0 40.0 22-23 39.007875541803514 40.0 40.0 40.0 37.0 40.0 24-25 38.99571662389108 40.0 40.0 40.0 37.0 40.0 26-27 38.903049998713314 40.0 40.0 40.0 37.0 40.0 28-29 38.82947824255362 40.0 38.5 40.0 37.0 40.0 30-31 38.73021758046637 40.0 37.0 40.0 37.0 40.0 32-33 38.672439075123634 40.0 37.0 40.0 37.0 40.0 34-35 38.664133527666934 40.0 37.0 40.0 37.0 40.0 36-37 38.629282405296436 40.0 37.0 40.0 37.0 40.0 38-39 38.59841998715351 40.0 37.0 40.0 37.0 40.0 40-41 38.53931134855547 40.0 37.0 40.0 37.0 40.0 42-43 38.43466298795763 40.0 37.0 40.0 37.0 40.0 44-45 38.39071883575532 40.0 37.0 40.0 37.0 40.0 46-47 38.31762315981764 40.0 37.0 40.0 37.0 40.0 48-49 38.251801987169074 40.0 37.0 40.0 37.0 40.0 50-51 38.223755609519316 40.0 37.0 40.0 37.0 40.0 52-53 38.20217848233307 40.0 37.0 40.0 37.0 40.0 54-55 38.15147461485658 40.0 37.0 40.0 37.0 40.0 56-57 38.055104095426344 40.0 37.0 40.0 37.0 40.0 58-59 37.852961593094285 40.0 37.0 40.0 33.0 40.0 60-61 37.768147759469514 40.0 37.0 40.0 33.0 40.0 62-63 37.465327254075845 38.5 37.0 40.0 33.0 40.0 64-65 37.300983479812125 37.0 37.0 40.0 33.0 40.0 66-67 37.15042657862169 37.0 37.0 40.0 33.0 40.0 68-69 36.93083795497998 37.0 37.0 40.0 33.0 40.0 70-71 36.66531695198633 37.0 37.0 40.0 33.0 40.0 72-73 36.417681696520106 37.0 37.0 38.5 33.0 40.0 74-75 35.950046035046 37.0 35.0 37.0 33.0 40.0 76-77 34.6182253680403 37.0 33.0 37.0 30.0 37.0 78-79 35.77166396652388 37.0 37.0 37.0 33.0 37.0 80-81 35.86101960954057 37.0 37.0 37.0 33.0 37.0 82-83 35.74839195255623 37.0 37.0 37.0 33.0 37.0 84-85 35.3830154690789 37.0 37.0 37.0 33.0 37.0 86-87 35.45953031598643 37.0 33.0 37.0 33.0 37.0 88-89 35.45269420732897 37.0 33.0 37.0 33.0 37.0 90-91 35.39119630430047 37.0 33.0 37.0 33.0 37.0 92-93 35.32277762770626 37.0 33.0 37.0 33.0 37.0 94-95 35.28216066495809 37.0 33.0 37.0 33.0 37.0 96-97 35.24488062721061 37.0 33.0 37.0 33.0 37.0 98-99 35.20435220240425 37.0 33.0 37.0 33.0 37.0 100 35.12226091284365 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 1.0 16 0.0 17 3.0 18 4.0 19 9.0 20 41.0 21 152.0 22 526.0 23 1603.0 24 3626.0 25 7517.0 26 13982.0 27 22806.0 28 35165.0 29 51163.0 30 71409.0 31 97776.0 32 132873.0 33 180137.0 34 255636.0 35 388541.0 36 747727.0 37 2174302.0 38 3746810.0 39 227763.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.48021997307693 0.0 24.98188624266258 28.537893784260493 2 15.369839768230698 24.512527922997176 39.28313928328635 20.834493025485777 3 16.354810010053882 25.913119403674724 33.24898514371243 24.48308544255897 4 12.449425034431737 24.294996779015978 37.80942439697724 25.446153789575042 5 16.856525723871872 36.70754147432172 31.99840036983175 14.437532431974661 6 26.06299373753994 38.064994332424014 21.11839675924218 14.753615170793863 7 25.56609273548996 33.90866164197563 22.41862411182546 18.106621510708955 8 23.64730360277431 32.07039142857108 23.067910538946094 21.214394429708516 9 24.93325324744322 20.469600553852512 23.300128572904487 31.297017625799782 10-11 24.417529227174587 26.71291908981751 28.194865601108393 20.674686081899512 12-13 25.305052765022477 25.20159145602245 28.393468431922653 21.099887347032418 14-15 22.561575533618676 27.063729568168526 27.669717235168704 22.70497766304409 16-17 20.305375123275475 29.60826616987584 28.56218176176174 21.524176945086943 18-19 20.414257022304604 27.97402853973223 31.291304249781724 20.32041018818144 20-21 22.115432873121005 26.80620740948365 31.24148863749383 19.836871079901513 22-23 21.6893130377756 26.832733858251697 30.944380548510047 20.533572555462655 24-25 20.883708875707146 27.166871650621033 31.337154960023224 20.612264513648597 26-27 20.736019182428016 27.387095954958003 31.171764514201257 20.705120348412727 28-29 20.583066478989874 27.515631253798915 31.257815473361354 20.643486793849853 30-31 20.867981059475444 27.345105501418722 31.23406848481463 20.552844954291206 32-33 20.67603389975386 27.540543489140656 31.06919508898966 20.71422752211582 34-35 20.86155718011567 27.574575022064273 30.97061022437904 20.59325757344101 36-37 20.765458975015818 27.601102245983377 30.891318334379697 20.742120444621104 38-39 20.652898657174983 27.781816557816143 30.871702823958213 20.69358196105066 40-41 20.990628407618843 27.70551492386799 30.592512241172802 20.71134442734036 42-43 20.9286499820371 27.742159309202574 30.38983453179689 20.939356176963436 44-45 21.087871883352715 28.09838363478809 29.850503889788456 20.963240592070743 46-47 21.157348094035836 28.171319309957365 29.330978192442487 21.34035440356431 48-49 21.248905022306555 28.27716548880363 29.120767161389537 21.35316232750028 50-51 21.269885751732506 28.551929679216652 28.795915201661558 21.382269367389284 52-53 21.419492206118505 28.489029035938536 28.705453478899635 21.386025279043324 54-55 21.486400557032656 28.436513040846844 28.64136819157831 21.435718210542188 56-57 21.477121197732558 28.60941758949424 28.472698288875314 21.44076292389789 58-59 21.4730614104521 28.545295868527447 28.53608573542143 21.44555698559902 60-61 21.50361491718751 28.544471079142248 28.516993366953812 21.43492063671643 62-63 21.45952340737339 28.59564329791842 28.449622396061162 21.495210898647024 64-65 21.41048137009379 28.48749667601937 28.511326200295084 21.590695753591756 66-67 21.54053016703088 28.539222147440764 28.328857378634282 21.59139030689408 68-69 21.60090432115075 28.574327063651445 28.34586628525752 21.478902329940286 70-71 21.518698899982276 28.24839317683992 28.479124529782563 21.753783393395242 72-73 21.516808705339983 28.325514045320716 28.448094953091807 21.709582296247497 74-75 21.460428544280465 28.4635415198276 28.336344915313262 21.739685020578676 76-77 21.580859850145735 28.389945809666767 28.244270634806877 21.784923705380624 78-79 21.559472969678954 28.388803546503887 28.31198371460073 21.739739769216428 80-81 21.52332642071496 28.430139163291962 28.271991532660113 21.774542883332966 82-83 21.74520586228721 28.286200558827606 28.337793116954224 21.630800461930956 84-85 21.807402573118875 28.189653327216284 28.248769556151736 21.75417454351311 86-87 21.611127072134792 28.337146950897306 28.303978899299654 21.747747077668247 88-89 21.76036432654657 28.19096489629508 28.283026403710398 21.76564437344795 90-91 21.769216711002155 28.137004963974725 28.33489099108821 21.758887333934915 92-93 21.69676701288322 28.157420556998712 28.40072504396592 21.745087386152143 94-95 21.661084107719674 28.167339240682605 28.419205271377233 21.752371380220488 96-97 21.726665431797905 28.42055767700812 28.564613887808893 21.288163003385083 98-99 22.69126889837855 30.37068922670741 28.161217409325083 18.776824465588955 100 21.744402673528356 31.035684627714165 22.590722001816538 24.62919069694094 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2876.0 1 2583.0 2 3538.5 3 5192.0 4 7583.0 5 12911.0 6 16927.0 7 19541.5 8 21545.0 9 21400.0 10 19643.0 11 18005.5 12 20191.5 13 27211.5 14 44122.0 15 68768.5 16 89981.0 17 101656.5 18 101397.5 19 91713.5 20 77601.5 21 62654.5 22 51880.5 23 49321.5 24 54096.0 25 64781.5 26 80702.0 27 97876.5 28 113540.0 29 131160.5 30 149600.0 31 167923.5 32 188563.0 33 209591.0 34 231800.5 35 252189.5 36 272198.5 37 290507.5 38 302636.0 39 312779.0 40 322451.5 41 329739.0 42 333061.0 43 337323.5 44 341456.0 45 343238.0 46 343153.5 47 340773.0 48 336571.0 49 329437.0 50 319673.0 51 303469.5 52 281731.0 53 259478.0 54 236285.0 55 213310.5 56 191257.5 57 169585.5 58 149463.0 59 129806.5 60 110642.0 61 90895.5 62 71794.5 63 54714.5 64 40156.0 65 30269.5 66 22697.5 67 17576.5 68 13253.5 69 8821.5 70 6039.0 71 4201.0 72 2898.0 73 2031.5 74 1541.5 75 1149.5 76 750.5 77 450.0 78 299.5 79 218.5 80 172.5 81 136.0 82 108.5 83 84.0 84 58.0 85 34.5 86 23.0 87 19.0 88 15.5 89 11.5 90 8.5 91 5.5 92 3.5 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.554107549500446E-4 2 9.804434619311573E-4 3 0.006568971194938755 4 0.026079796087368785 5 0.0022917865922640807 6 0.0 7 0.0 8 0.0 9 0.0 10-11 6.127771637069734E-6 12-13 1.2255543274139468E-5 14-15 1.2255543274139468E-5 16-17 2.4511086548278936E-5 18-19 1.2255543274139468E-5 20-21 1.1643122842422098E-4 22-23 3.431922035066031E-4 24-25 0.007459535391695178 26-27 0.04575987232609332 28-29 0.08796743977503997 30-31 0.07966327024117072 32-33 0.033741831646940466 34-35 0.0019869523462595624 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.428651678613003E-5 56-57 8.312038928603118E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 7.288640893692331E-6 68-69 2.2109815918094628E-5 70-71 8.422957702962533E-4 72-73 0.014176731002596353 74-75 0.021368851284450797 76-77 0.0028188437703591186 78-79 7.011236207145571E-5 80-81 5.124909417226051E-4 82-83 0.009830747562122225 84-85 0.04362955600467912 86-87 0.040450615444144654 88-89 0.009607438093467216 90-91 7.551935288305618E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 141.0 20-21 507.0 22-23 1088.0 24-25 2374.0 26-27 4798.0 28-29 11196.0 30-31 22568.0 32-33 29753.0 34-35 42115.0 36-37 57110.0 38-39 67310.0 40-41 72554.0 42-43 90309.0 44-45 109328.0 46-47 106752.0 48-49 89399.0 50-51 74195.0 52-53 68910.0 54-55 72095.0 56-57 74460.0 58-59 73353.0 60-61 71223.0 62-63 68115.0 64-65 71232.0 66-67 75442.0 68-69 76312.0 70-71 75152.0 72-73 70870.0 74-75 71391.0 76-77 72143.0 78-79 76509.0 80-81 76382.0 82-83 73324.0 84-85 72775.0 86-87 76033.0 88-89 82209.0 90-91 85307.0 92-93 88946.0 94-95 110592.0 96-97 356783.0 98-99 1356215.0 100-101 3982303.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.97027372817716 #Duplication Level Percentage of deduplicated Percentage of total 1 90.00492883199233 77.37748368571485 2 7.130457262015037 12.260147252450029 3 1.693456959947711 4.367608751807745 4 0.5821399604012351 2.001869269752176 5 0.24908052590630153 1.0706760496261534 6 0.11716296711574807 0.6043519412247768 7 0.07031218021438769 0.42313301656190827 8 0.04360787451223326 0.29991847268165545 9 0.02654354591660847 0.20537603173505425 >10 0.07907932157924112 1.0209546908220206 >50 0.0020641998848351956 0.12472536898168608 >100 0.0010354707894734217 0.1688450325090334 >500 1.0908353409562558E-4 0.05356674680432666 >1k 2.1816190601666763E-5 0.021343689328583076 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.4511086548278936E-5 2 0.0 0.0 0.0 3.67666298224184E-5 2.4511086548278936E-5 3 0.0 0.0 0.0 3.67666298224184E-5 2.4511086548278936E-5 4 0.0 0.0 0.0 7.35332596448368E-5 2.4511086548278936E-5 5 0.0 0.0 0.0 7.35332596448368E-5 2.4511086548278936E-5 6 0.0 0.0 0.0 7.35332596448368E-5 2.4511086548278936E-5 7 0.0 0.0 0.0 1.593220625638131E-4 2.4511086548278936E-5 8 0.0 0.0 0.0 1.593220625638131E-4 2.4511086548278936E-5 9 0.0 0.0 0.0 1.593220625638131E-4 2.4511086548278936E-5 10-11 0.0 0.0 0.0 1.7157760583795255E-4 2.4511086548278936E-5 12-13 0.0 0.0 0.0 2.3898309384571962E-4 2.4511086548278936E-5 14-15 0.0 0.0 0.0 2.6349418039399853E-4 2.4511086548278936E-5 16-17 0.0 0.0 0.0 2.880052669422775E-4 3.67666298224184E-5 18-19 0.0 0.0 0.0 3.3089966840176563E-4 3.67666298224184E-5 20-21 0.0 0.0 0.0 3.492829833129748E-4 4.2894401459488137E-5 22-23 0.0 0.0 0.0 3.7379406986125376E-4 4.902217309655787E-5 24-25 0.0 0.0 0.0 4.1056069968367214E-4 4.902217309655787E-5 26-27 0.0 0.0 0.0 5.086050458767879E-4 4.902217309655787E-5 28-29 0.0 0.0 0.0 9.865712335682271E-4 4.902217309655787E-5 30-31 0.0 0.0 0.0 0.0021079534431519883 4.902217309655787E-5 32-33 0.0 0.0 0.0 0.004111734768473792 4.902217309655787E-5 34-35 0.0 0.0 0.0 0.006930509721525869 4.902217309655787E-5 36-37 0.0 0.0 0.0 0.011121905521281568 4.902217309655787E-5 38-39 0.0 0.0 0.0 0.01655111119172535 4.902217309655787E-5 40-41 0.0 0.0 0.0 0.02210287229491053 4.902217309655787E-5 42-43 0.0 0.0 0.0 0.027961021979949194 4.902217309655787E-5 44-45 0.0 0.0 0.0 0.03455450426143623 4.902217309655787E-5 46-47 0.0 0.0 0.0 0.04147888621132503 4.902217309655787E-5 48-49 0.0 0.0 0.0 0.04815202952409397 6.127771637069734E-5 50-51 0.0 0.0 0.0 0.05475163957721807 6.127771637069734E-5 52-53 0.0 0.0 0.0 0.06144316620489822 6.127771637069734E-5 54-55 0.0 0.0 0.0 0.06843495364279478 6.127771637069734E-5 56-57 1.2255543274139468E-5 0.0 0.0 0.07591083504001986 6.127771637069734E-5 58-59 1.2255543274139468E-5 0.0 0.0 0.08326416100450354 6.127771637069734E-5 60-61 1.2255543274139468E-5 0.0 0.0 0.0907461701733657 6.127771637069734E-5 62-63 1.2255543274139468E-5 0.0 0.0 0.09729063028175616 6.127771637069734E-5 64-65 1.2255543274139468E-5 0.0 0.0 0.10398215690943631 6.127771637069734E-5 66-67 1.2255543274139468E-5 0.0 0.0 0.11048985038800438 6.127771637069734E-5 68-69 1.2255543274139468E-5 0.0 0.0 0.11756742662881992 6.127771637069734E-5 70-71 1.2255543274139468E-5 0.0 0.0 0.12316208213346458 6.127771637069734E-5 72-73 1.2255543274139468E-5 0.0 0.0 0.12750667222414702 6.127771637069734E-5 74-75 1.2255543274139468E-5 0.0 0.0 0.13087694662453536 6.127771637069734E-5 76-77 1.2255543274139468E-5 0.0 0.0 0.13408177119072284 6.127771637069734E-5 78-79 1.2255543274139468E-5 0.0 0.0 0.13625100235024554 6.127771637069734E-5 80-81 1.2255543274139468E-5 0.0 0.0 0.13680862956921888 6.127771637069734E-5 82-83 1.2255543274139468E-5 0.0 0.0 0.1371885514107172 6.127771637069734E-5 84-85 1.2255543274139468E-5 0.0 0.0 0.13743979004783707 6.127771637069734E-5 86-87 1.2255543274139468E-5 0.0 0.0 0.13750719553584484 6.127771637069734E-5 88 1.2255543274139468E-5 0.0 0.0 0.1375317066223931 6.127771637069734E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20340 0.0 58.333397 1 GTATCAA 39055 0.0 38.845158 1 TGGTATC 6660 0.0 35.5187 2 GTGGTAT 7400 0.0 33.254463 1 ATCAACG 47330 0.0 31.668097 3 TCAACGC 49985 0.0 29.983625 4 TATCAAC 50565 0.0 29.740744 2 CAACGCA 50965 0.0 29.415035 5 AACGCAG 51520 0.0 29.097092 6 ACGCAGA 51805 0.0 28.929024 7 CGCAGAG 60165 0.0 24.936832 8 GCAGAGT 66705 0.0 22.467104 9 GAGTACT 36840 0.0 21.453068 12-13 TACATGG 52355 0.0 21.269943 2 GTACATG 53365 0.0 21.069223 1 ACATGGG 51665 0.0 21.056597 3 CAGAGTA 66375 0.0 20.133131 10-11 GTACTTT 40150 0.0 19.587015 14-15 AGAGTAC 64200 0.0 18.58662 10-11 CATGGGG 30640 0.0 18.238052 4 >>END_MODULE