##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139300_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12087340 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.978420562340432 31.0 31.0 34.0 30.0 34.0 2 32.13131069366792 33.0 31.0 34.0 30.0 34.0 3 32.19321703534442 34.0 31.0 34.0 30.0 34.0 4 35.859754503472224 37.0 35.0 37.0 35.0 37.0 5 35.73422705078206 37.0 35.0 37.0 33.0 37.0 6 35.74877830854431 37.0 35.0 37.0 33.0 37.0 7 35.6299479455364 37.0 35.0 37.0 33.0 37.0 8 35.619166748019005 37.0 35.0 37.0 33.0 37.0 9 37.19034800046991 39.0 37.0 39.0 33.0 39.0 10-11 37.11062620063637 39.0 37.0 39.0 33.0 39.0 12-13 37.06991935363777 39.0 37.0 39.0 33.0 39.0 14-15 38.25561935049399 40.0 38.0 41.0 33.0 41.0 16-17 38.256090380513825 40.0 38.0 41.0 33.0 41.0 18-19 38.29280073200555 40.0 38.0 41.0 33.0 41.0 20-21 38.26170045636577 40.0 38.0 41.0 33.0 41.0 22-23 38.17480839649661 40.0 37.5 41.0 33.0 41.0 24-25 38.10094168337676 40.0 37.0 41.0 33.0 41.0 26-27 37.930291180927696 40.0 37.0 41.0 33.0 41.0 28-29 37.827432802777146 40.0 37.0 41.0 32.5 41.0 30-31 37.70658922799139 40.0 37.0 41.0 32.0 41.0 32-33 37.883554004928044 40.0 37.0 41.0 33.0 41.0 34-35 37.86954030656524 40.0 37.0 41.0 33.0 41.0 36-37 37.798614740658934 40.0 37.0 41.0 33.0 41.0 38-39 37.62061491341119 40.0 37.0 41.0 32.0 41.0 40-41 37.6365702172326 40.0 37.0 41.0 32.0 41.0 42-43 37.60783587404859 40.0 37.0 41.0 32.0 41.0 44-45 37.58149247417475 40.0 36.5 41.0 32.0 41.0 46-47 37.59979263862269 40.0 37.0 41.0 32.0 41.0 48-49 37.513042626905374 40.0 36.0 41.0 32.0 41.0 50-51 37.425766878949034 39.5 36.0 41.0 31.5 41.0 52-53 37.28095537332122 39.0 36.0 41.0 31.0 41.0 54-55 37.17289327108506 39.0 35.5 41.0 31.0 41.0 56-57 37.02038935411521 39.0 35.0 40.5 31.0 41.0 58-59 36.86475402822663 39.0 35.0 40.0 31.0 41.0 60-61 36.656821533398684 38.0 35.0 40.0 31.0 41.0 62-63 36.41128224792494 38.0 35.0 40.0 30.0 41.0 64-65 36.204894481219696 38.0 34.5 40.0 30.0 41.0 66-67 35.91316394769218 37.0 34.0 40.0 30.0 41.0 68-69 35.63334193016112 37.0 34.0 39.5 29.0 41.0 70-71 35.35753827435889 36.0 34.0 39.0 29.0 41.0 72-73 35.06716198978641 36.0 34.0 39.0 29.0 40.0 74-75 34.73736449261348 35.0 34.0 38.0 29.0 40.0 76-77 33.68284024212444 35.0 32.0 37.0 27.5 39.0 78-79 34.02285370010081 35.0 33.0 37.0 29.0 39.0 80-81 33.93488389447364 35.0 33.0 36.0 29.0 39.0 82-83 33.73784560713966 35.0 33.0 36.0 29.0 37.5 84-85 33.53830677605367 35.0 33.0 36.0 29.0 37.0 86-87 33.35488476077185 35.0 33.0 35.0 29.0 37.0 88-89 33.15838996047779 35.0 33.0 35.0 29.0 36.0 90-91 33.066775713071664 35.0 33.0 35.0 29.0 36.0 92-93 33.011910459111846 34.5 33.0 35.0 29.0 36.0 94-95 32.97529210977446 34.0 33.0 35.0 29.0 35.5 96-97 32.90902122580901 34.0 32.0 35.0 29.0 35.0 98-99 33.04109311517343 34.0 32.5 35.0 29.0 35.0 100-101 32.552222157253915 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 6.0 19 17.0 20 100.0 21 583.0 22 2604.0 23 8701.0 24 22141.0 25 46200.0 26 81536.0 27 127340.0 28 178521.0 29 233188.0 30 291737.0 31 360972.0 32 443069.0 33 556173.0 34 728823.0 35 983027.0 36 1464376.0 37 2330022.0 38 2693059.0 39 1476499.0 40 58643.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.586253054849124 21.473351456978953 13.877197133529792 25.06319835464213 2 14.750619109790733 22.52556090110186 39.368548966159246 23.35527102294816 3 17.539368069087857 26.546879568315063 31.250290593442692 24.66346176915439 4 12.32781571462373 18.310720141900532 38.51408167553821 30.84738246793753 5 12.663811889133589 38.319646837103946 36.14518992598868 12.871351347773786 6 30.287085496064474 38.451131514460585 18.260932512860563 13.000850476614376 7 26.168487028577008 32.79494909549992 23.554380037295218 17.482183838627854 8 24.733977864443293 36.73862901184214 21.245038196989576 17.282354926724985 9 25.752862085454698 15.618035068096042 21.179002162593257 37.450100683856 10-11 24.325711860508598 26.67612146262122 29.226723993864656 19.771442683005525 12-13 24.72282983683755 24.38044681460106 29.280399988748556 21.616323359812828 14-15 21.877398170317043 25.833839372434298 26.693523968052524 25.59523848919613 16-17 21.634702093264522 28.76265166695071 27.5507349011445 22.051911338640263 18-19 21.57304253872233 28.171706926420537 29.079876134865074 21.17537439999206 20-21 22.370273769947296 27.431249730328034 28.819966766898798 21.378509732825872 22-23 22.127904889337223 27.340178258435223 28.65129362911589 21.880623223111662 24-25 21.84927797322239 27.411206417747263 28.84798882370145 21.8915267853289 26-27 21.847386604952156 27.59625822458826 28.681686287423542 21.87466888303604 28-29 21.777345137508842 27.726351347852784 28.697145022974237 21.799158491664137 30-31 22.09513500156884 27.609528128536915 28.55383030191342 21.741506567980835 32-33 21.903990537150715 27.78301873049817 28.47745768334167 21.835533049009452 34-35 21.98705707794672 27.762587038947185 28.534942444030055 21.71541343907604 36-37 21.949859553058797 27.677534968916472 28.52974208436119 21.842863393663546 38-39 21.857754809500584 27.817135397670768 28.54787100047702 21.777238792351625 40-41 22.080753845999183 27.605527450150298 28.4511785524362 21.86254015141432 42-43 21.885475374651246 27.768430145524874 28.264121964497196 22.08197251532668 44-45 22.010004191503782 27.87841736206192 28.085877007292687 22.02570143914161 46-47 22.038607126158183 27.773458665049965 27.873309451133938 22.31462475765791 48-49 22.005466431921995 27.899981785802485 27.924564615499374 22.169987166776146 50-51 22.001949970630264 27.993206293517364 27.752780859390658 22.252062876461707 52-53 22.120685957499138 27.920823107387733 27.57796231823994 22.38052861687319 54-55 22.08018076468928 27.772266729273387 27.69379520709745 22.453757298939877 56-57 22.13308910987611 27.804709096728185 27.690830904368667 22.371370889027038 58-59 22.083851508797782 27.888921026048784 27.687181695953626 22.340045769199808 60-61 22.15721234928553 27.817151227739572 27.701537332464994 22.324099090509904 62-63 22.148322184428782 27.882309497541957 27.605415999623666 22.363952318405595 64-65 22.03680246069499 27.870978990779253 27.6039139935278 22.488304554997953 66-67 22.152045076256886 27.999447654188465 27.350636102369936 22.497871167184712 68-69 22.16342617262976 27.953471343679116 27.391197964371283 22.491904519319842 70-71 22.109430018524325 27.72067576016923 27.505847659491682 22.664046561814764 72-73 22.153354276745777 27.711355261039078 27.48830700204088 22.646983460174262 74-75 22.06790133608211 27.831256072427742 27.41269024747548 22.688152344014668 76-77 22.286846946424607 27.816898874835168 27.286230311539782 22.61002386720044 78-79 22.289266853216972 27.779340755895593 27.26875612547656 22.662636265410875 80-81 22.3323970033118 27.72377006562027 27.232989683084618 22.71084324798331 82-83 22.31528563802963 27.695148385498534 27.451856919987144 22.537709056484694 84-85 22.454225047052578 27.71907912848157 27.29139722758981 22.535298596876043 86-87 22.240850961518735 27.75680045778645 27.38759867330606 22.614749907388756 88-89 22.379312957874482 27.642857839546448 27.407282175354126 22.570547027224936 90-91 22.364037417836638 27.676398381852675 27.486092729105433 22.473471471205254 92-93 22.45335955047366 27.59354891004505 27.449404754122792 22.503686785358497 94-95 22.339328799661043 27.611724720629148 27.576994129303806 22.471952350406003 96-97 22.247592301195603 27.617153969109125 27.686085037971164 22.449168691724104 98-99 22.370272417159153 28.249128340190676 27.775715831000714 21.604883411649457 100-101 26.326564907716243 35.384763840312566 28.56297929260875 9.725691959362438 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2450.0 1 2354.0 2 3480.5 3 5070.5 4 6913.5 5 10804.0 6 14018.0 7 16278.5 8 17551.0 9 17210.0 10 16057.0 11 14856.0 12 16347.5 13 21611.5 14 33156.0 15 48473.0 16 59996.0 17 65216.5 18 66341.0 19 65425.5 20 62989.0 21 60837.0 22 61701.0 23 68134.5 24 81085.0 25 100431.0 26 125564.5 27 152668.5 28 180272.0 29 208945.5 30 233513.5 31 256367.0 32 281482.0 33 307601.5 34 335518.0 35 362471.0 36 389842.0 37 414276.0 38 431780.0 39 446353.5 40 462030.0 41 477484.5 42 489108.0 43 502517.0 44 516467.5 45 527854.5 46 535158.5 47 538318.0 48 537951.0 49 529356.0 50 518130.5 51 506397.0 52 486967.5 53 462882.5 54 435925.5 55 403136.5 56 370776.0 57 336611.0 58 300172.5 59 263999.5 60 224075.0 61 183665.5 62 147176.5 63 115625.0 64 87931.5 65 65882.5 66 49546.0 67 37742.0 68 28830.5 69 20799.0 70 14635.5 71 10427.0 72 7310.5 73 5069.0 74 3533.0 75 2387.5 76 1653.5 77 1129.5 78 765.5 79 531.0 80 385.0 81 280.0 82 197.0 83 136.0 84 99.0 85 70.5 86 47.5 87 37.0 88 32.0 89 24.5 90 17.0 91 13.0 92 10.5 93 5.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018779979714312661 3 4.9638712901266945E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0024241448467086217 22-23 4.7578604819886435E-4 24-25 0.0011132142169291161 26-27 0.011422553842913097 28-29 2.9824474270115375E-4 30-31 0.002489168900108034 32-33 0.002909192127334882 34-35 0.001777084152795619 36-37 0.061807804169972135 38-39 0.028075734570423398 40-41 0.02557745672116075 42-43 0.003334985772464343 44-45 0.0014909743931085491 46-47 0.0033333058160831784 48-49 0.0029103847279666113 50-51 6.971995420866797E-4 52-53 8.87017349362743E-4 54-55 0.001368014651577951 56-57 0.011486560010153529 58-59 0.008822176613598328 60-61 0.0045829745583152144 62-63 0.002550917532217517 64-65 0.0011653939740454149 66-67 4.4080855976413256E-4 68-69 0.0015999181175457237 70-71 6.361189281586896E-5 72-73 7.008283089783815E-4 74-75 2.411971800102794E-4 76-77 0.00561103470770776 78-79 0.0015900856794952888 80-81 5.90315014083643E-4 82-83 3.892837038291833E-4 84-85 0.0029859456883515015 86-87 0.003404866767134732 88-89 0.043328690899193764 90-91 3.832157137858915E-4 92-93 5.033351839072367E-4 94-95 2.680339435505773E-4 96-97 0.0191085508692629 98-99 7.249026383266464E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 391.0 20-21 1197.0 22-23 2270.0 24-25 5008.0 26-27 6025.0 28-29 12441.0 30-31 35046.0 32-33 51006.0 34-35 72853.0 36-37 112265.0 38-39 117967.0 40-41 124078.0 42-43 139205.0 44-45 161167.0 46-47 161432.0 48-49 149100.0 50-51 138226.0 52-53 127498.0 54-55 139063.0 56-57 145302.0 58-59 147763.0 60-61 148224.0 62-63 141633.0 64-65 153410.0 66-67 160284.0 68-69 161957.0 70-71 159607.0 72-73 153216.0 74-75 156176.0 76-77 158171.0 78-79 164449.0 80-81 164648.0 82-83 155446.0 84-85 155788.0 86-87 162727.0 88-89 169868.0 90-91 178995.0 92-93 182190.0 94-95 215305.0 96-97 263095.0 98-99 888459.0 100-101 6144389.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.8176254390033 #Duplication Level Percentage of deduplicated Percentage of total 1 90.5389432587787 77.69837120225044 2 6.519845339017091 11.190352904480005 3 1.6347323179198652 4.2086653725684195 4 0.5931809615902752 2.036215263172082 5 0.2712038614372631 1.1637035699217197 6 0.15246641264267327 0.7850583295318472 7 0.08506003402588888 0.5109755097903825 8 0.0526252556442826 0.36129395820102705 9 0.037451818499163854 0.28926235187737004 >10 0.11202231693121076 1.4859438834324301 >50 0.00167804888812016 0.09703835480596264 >100 7.133501832315969E-4 0.10541317434995878 >500 4.6221708269616605E-5 0.026627417890466885 >1k 3.080273396382501E-5 0.04107870772789854 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.273118816877824E-6 0.0 2 0.0 2.4819356450633472E-5 0.0 8.273118816877824E-6 0.0 3 0.0 2.4819356450633472E-5 0.0 8.273118816877824E-6 0.0 4 0.0 4.9638712901266945E-5 0.0 3.3092475267511294E-5 8.273118816877824E-6 5 0.0 4.9638712901266945E-5 0.0 4.136559408438912E-5 8.273118816877824E-6 6 0.0 5.791183171814477E-5 0.0 4.136559408438912E-5 2.4819356450633472E-5 7 0.0 5.791183171814477E-5 0.0 5.791183171814477E-5 3.3092475267511294E-5 8 8.273118816877824E-6 6.618495053502259E-5 0.0 6.618495053502259E-5 4.9638712901266945E-5 9 1.6546237633755647E-5 1.737354951544343E-4 0.0 9.927742580253389E-5 1.0755054461941171E-4 10-11 1.6546237633755647E-5 1.737354951544343E-4 0.0 1.1996022284472844E-4 1.1996022284472844E-4 12-13 1.6546237633755647E-5 1.737354951544343E-4 0.0 1.40643019886923E-4 1.365064604784841E-4 14-15 3.722903467595021E-5 2.399204456894569E-4 0.0 1.6132581692911757E-4 1.7787205456287322E-4 16-17 4.9638712901266945E-5 2.399204456894569E-4 0.0 2.068279704219456E-4 1.9028173278818995E-4 18-19 5.791183171814477E-5 2.6473980214009035E-4 0.0 2.8955915859072383E-4 2.1923764864726234E-4 20-21 6.204839112658368E-5 2.9783227740760165E-4 0.0 5.708451983645698E-4 2.2751076746414017E-4 22-23 6.618495053502259E-5 3.185150744497962E-4 0.0 0.0010837785650109949 2.5646668332321253E-4 24-25 6.618495053502259E-5 3.3092475267511296E-4 0.0 0.00258534963027432 2.854225991822849E-4 26-27 6.618495053502259E-5 3.433344309004297E-4 0.0 0.006068332652179884 2.8955915859072383E-4 28-29 6.618495053502259E-5 3.474709903088686E-4 0.0 0.02782663514056856 2.8955915859072383E-4 30-31 6.618495053502259E-5 3.805634655763799E-4 0.0 0.0439674899522972 2.9369571799916274E-4 32-33 7.445806935190041E-5 3.9710970321013556E-4 0.0 0.0599346092688714 3.3092475267511296E-4 34-35 7.445806935190041E-5 5.17069926054864E-4 0.0 0.0840135215853943 3.6401722794262426E-4 36-37 7.445806935190041E-5 6.328935894911535E-4 0.0 0.1157450688075292 3.722903467595021E-4 38-39 7.445806935190041E-5 6.783957429839816E-4 0.0 0.16680675814529913 3.847000249848188E-4 40-41 1.3236990107004518E-4 7.445806935190042E-4 0.0 0.2559992521100589 3.8883658439325773E-4 42-43 1.3236990107004518E-4 7.569903717443209E-4 0.0 0.297910872036362 3.8883658439325773E-4 44-45 1.5718925752067865E-4 8.604043569552937E-4 0.0 0.356993350067095 3.9297314380169664E-4 46-47 1.9028173278818995E-4 9.43135545124072E-4 0.0 0.42124652735837664 4.095193814354523E-4 48-49 1.9855485160506778E-4 9.472721045325109E-4 0.0 0.4733919952611575 4.136559408438912E-4 50-51 2.1510108923882343E-4 0.0010093204956590945 0.0 0.5210989349186834 4.2192905966076903E-4 52-53 2.2337420805570125E-4 0.0010175936144759723 0.0 0.5844379325807001 4.508849755198414E-4 54-55 2.2751076746414017E-4 0.0010175936144759723 0.0 0.7041458253015138 4.881140101957916E-4 56-57 2.3164732687257908E-4 0.0010175936144759723 0.0 0.8228940362395696 5.046602478295472E-4 58-59 2.35783886281018E-4 0.001030003292701289 0.0 0.9152592712706021 5.129333666464251E-4 60-61 2.399204456894569E-4 0.0010630957679688003 0.0 0.9705443877643882 5.418892825054974E-4 62-63 2.399204456894569E-4 0.001075505446194117 0.0 1.0054900416468802 5.873914359983255E-4 64-65 2.440570050978958E-4 0.001174782871996651 0.0 1.031066388469258 5.873914359983255E-4 66-67 2.481935645063347E-4 0.001174782871996651 0.0 1.044874223774627 5.915279954067644E-4 68-69 2.481935645063347E-4 0.0012120119066726012 0.0 1.0579622977429277 5.998011142236422E-4 70-71 2.481935645063347E-4 0.00121614846608104 0.0 1.069209602774473 6.246204706742757E-4 72-73 2.523301239147736E-4 0.001220285025489479 0.0 1.0779418796856877 7.03215099434615E-4 74-75 2.6473980214009035E-4 0.0012740602977991849 0.0 1.0854580081308212 7.03215099434615E-4 76-77 2.6473980214009035E-4 0.001319562451292013 0.0 1.09213855157545 7.07351658843054E-4 78-79 2.6473980214009035E-4 0.0013319721295173296 0.0 1.0984385315545024 7.114882182514929E-4 80-81 2.6473980214009035E-4 0.0013319721295173296 0.0 1.1022400296508579 7.197613370683707E-4 82-83 2.6473980214009035E-4 0.0013402452483342075 0.0 1.1047633308900056 7.445806935190042E-4 84-85 2.6473980214009035E-4 0.0013567914859679631 0.0 1.106831610594225 7.445806935190042E-4 86-87 2.6473980214009035E-4 0.0013816108424185966 0.0 1.1071170331934073 7.52853812335882E-4 88-89 2.6887636154852927E-4 0.0014726151494042527 0.0 1.1071666719063087 7.611269311527598E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13820 0.0 43.410904 1 GTATCAA 22745 0.0 31.00329 1 ATCAACG 27950 0.0 24.522041 3 TCAACGC 28230 0.0 24.335947 4 CAACGCA 28560 0.0 23.970055 5 AACGCAG 29335 0.0 23.556688 6 TATCAAC 29830 0.0 23.288198 2 GTACATG 34115 0.0 21.190384 1 TACATGG 33715 0.0 20.867777 2 ACATGGG 34260 0.0 20.076185 3 ACGCAGA 34870 0.0 19.66717 7 CGCAGAG 35310 0.0 19.376425 8 CATGGGG 24780 0.0 17.994646 4 AGAGTAC 37395 0.0 16.258383 10-11 GAGTACT 23875 0.0 16.228168 12-13 GCAGAGT 42130 0.0 16.019669 9 GTGGTAT 6910 0.0 15.987349 1 CAGAGTA 40830 0.0 15.394169 10-11 TGGTATC 6655 0.0 15.388262 2 ATGGGGG 15205 0.0 15.11395 5 >>END_MODULE