##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139299_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15709611 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.98019034335096 31.0 31.0 34.0 30.0 34.0 2 32.13125684652535 33.0 31.0 34.0 30.0 34.0 3 32.19575557918016 34.0 31.0 34.0 30.0 34.0 4 35.8614378166334 37.0 35.0 37.0 35.0 37.0 5 35.737303106996094 37.0 35.0 37.0 33.0 37.0 6 35.75375106360049 37.0 35.0 37.0 33.0 37.0 7 35.63413766260667 37.0 35.0 37.0 33.0 37.0 8 35.62404957067365 37.0 35.0 37.0 33.0 37.0 9 37.19773023023931 39.0 37.0 39.0 33.0 39.0 10-11 37.11743241127995 39.0 37.0 39.0 33.0 39.0 12-13 37.07813659421612 39.0 37.0 39.0 33.0 39.0 14-15 38.26702020183695 40.0 38.0 41.0 33.0 41.0 16-17 38.26813728869544 40.0 38.0 41.0 33.0 41.0 18-19 38.305961490707816 40.0 38.0 41.0 33.5 41.0 20-21 38.27739662069102 40.0 38.0 41.0 33.0 41.0 22-23 38.19276033675058 40.0 38.0 41.0 33.0 41.0 24-25 38.11819830913781 40.0 37.0 41.0 33.0 41.0 26-27 37.94859469144855 40.0 37.0 41.0 33.0 41.0 28-29 37.84966361485867 40.0 37.0 41.0 33.0 41.0 30-31 37.733495782459364 40.0 37.0 41.0 32.5 41.0 32-33 37.903769257333764 40.0 37.0 41.0 33.0 41.0 34-35 37.88838104636968 40.0 37.0 41.0 33.0 41.0 36-37 37.81711399893072 40.0 37.0 41.0 33.0 41.0 38-39 37.64572277340059 40.0 37.0 41.0 32.0 41.0 40-41 37.66351860923703 40.0 37.0 41.0 32.0 41.0 42-43 37.63535995004311 40.0 37.0 41.0 32.0 41.0 44-45 37.6105992043828 40.0 37.0 41.0 32.0 41.0 46-47 37.629036477110425 40.0 37.0 41.0 32.0 41.0 48-49 37.543098479265645 40.0 36.0 41.0 32.0 41.0 50-51 37.457680629342185 39.5 36.0 41.0 31.5 41.0 52-53 37.311095835166086 39.0 36.0 41.0 31.0 41.0 54-55 37.20692537476685 39.0 36.0 41.0 31.0 41.0 56-57 37.060170435116504 39.0 35.0 41.0 31.0 41.0 58-59 36.908477021841605 39.0 35.0 40.0 31.0 41.0 60-61 36.70308112987273 38.5 35.0 40.0 31.0 41.0 62-63 36.459008831420135 38.0 35.0 40.0 30.5 41.0 64-65 36.25618636095365 38.0 35.0 40.0 30.0 41.0 66-67 35.96483772137787 37.0 34.0 40.0 30.0 41.0 68-69 35.685156127401825 37.0 34.0 39.5 30.0 41.0 70-71 35.40696405848509 36.0 34.0 39.0 29.0 41.0 72-73 35.1160462699161 36.0 34.0 39.0 29.0 40.0 74-75 34.7875134419579 35.0 34.0 38.0 29.0 40.0 76-77 33.72564222807599 35.0 32.5 37.0 28.0 39.0 78-79 34.06394115257325 35.0 33.0 37.0 29.0 39.0 80-81 33.97210895525696 35.0 33.0 36.5 29.0 39.0 82-83 33.77254690420423 35.0 33.0 36.0 29.0 37.5 84-85 33.57060516420016 35.0 33.0 36.0 29.0 37.0 86-87 33.38068380478906 35.0 33.0 35.0 29.0 37.0 88-89 33.17891088079594 35.0 33.0 35.0 29.0 36.0 90-91 33.0856811651757 35.0 33.0 35.0 29.0 36.0 92-93 33.027403989936445 34.5 33.0 35.0 29.0 36.0 94-95 32.99304573875209 34.0 33.0 35.0 29.0 35.5 96-97 32.924647028105085 34.0 32.0 35.0 29.0 35.0 98-99 33.05218423991743 34.0 33.0 35.0 29.0 35.0 100-101 32.55603825327364 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 8.0 19 18.0 20 143.0 21 771.0 22 3403.0 23 11387.0 24 29037.0 25 60083.0 26 105879.0 27 163721.0 28 228892.0 29 298657.0 30 376499.0 31 464444.0 32 574141.0 33 721383.0 34 947090.0 35 1277975.0 36 1905106.0 37 3041373.0 38 3534187.0 39 1889157.0 40 76257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.49871196683355 21.540858013607085 13.959301729368093 25.00112829019127 2 14.676139016233822 22.523718749566342 39.51004315786914 23.290099076330698 3 17.5356395111499 26.644043983039417 31.255987978307026 24.56432852750366 4 12.278668135067125 18.439839153241923 38.65915585051724 30.62233686117371 5 12.659619643032535 38.36211475892051 36.136184403292994 12.842081194753963 6 30.119116253101364 38.540763358176086 18.397145543578386 12.942974845144162 7 26.145504175755846 32.78945608519523 23.61812778177639 17.446911957272526 8 24.724794267662006 36.783737038428264 21.274511507636948 17.216957186272786 9 25.726607743501734 15.730625029480361 21.2201626125561 37.32260461446181 10-11 24.234307902340802 26.762718694944134 29.26711870841359 19.73585469430147 12-13 24.67065225230593 24.440894812735976 29.342292434866785 21.546160500091315 14-15 21.8686955393103 25.888473622930576 26.71439159123673 25.5284392465224 16-17 21.57463988128032 28.86569883875546 27.538552673264793 22.02110860669943 18-19 21.531688467652064 28.250486278749996 29.086076669880622 21.131748583717318 20-21 22.379124282474 27.492658428658643 28.79883426096334 21.32938302790402 22-23 22.087416369209997 27.423558402752622 28.65497824381047 21.83404698422691 24-25 21.824663410175717 27.518520273337376 28.826723935463193 21.830092381023704 26-27 21.8726172188926 27.640251288450006 28.680782150178345 21.806349342479052 28-29 21.750264673566928 27.80178061297436 28.683555206134958 21.764399507323756 30-31 22.06809600361159 27.64710884098614 28.560379911572966 21.724415243829302 32-33 21.91321110485873 27.81496712793114 28.46619453975886 21.805627227451268 34-35 21.989629109846398 27.816423913559323 28.545052995239683 21.648893981354597 36-37 21.939948396416522 27.736772311549178 28.53291607327964 21.790363218754656 38-39 21.874440251922493 27.829382153135246 28.585245045578073 21.710932549364184 40-41 22.040568465540098 27.687559994945605 28.443222134152585 21.828649405361713 42-43 21.919222801588706 27.799450022169754 28.248455438226372 22.032871738015164 44-45 22.038441849124496 27.922111135353518 28.06995610168742 21.969490913834562 46-47 22.056980476499177 27.878089532428184 27.852125739409246 22.212804251663396 48-49 22.061659696085282 27.926953046321785 27.89809516504733 22.113292092545596 50-51 22.036524368231365 28.005077233805704 27.7702902534442 22.188108144518733 52-53 22.141719438263923 27.93787018190625 27.62967917846216 22.290731201367667 54-55 22.111005037159533 27.82227183676232 27.721739883918357 22.344983242159792 56-57 22.13907698928291 27.893273039300198 27.708755769895195 22.2588942015217 58-59 22.08800451583243 27.936402149556887 27.719941674800687 22.255651659809995 60-61 22.182278055816596 27.90017268592227 27.71286009479069 22.204689163470448 62-63 22.17074302482547 27.92518596440978 27.655728857706034 22.24834215305872 64-65 22.05952133028229 27.898475770731775 27.684696982874062 22.357305916111876 66-67 22.184869871576893 27.965253627709874 27.49192389134341 22.35795260936983 68-69 22.11216019880438 27.949926539378783 27.549213147241815 22.388700114575027 70-71 22.111143196251916 27.70883902670061 27.64917677449288 22.530841002554595 72-73 22.17279261584456 27.719826248811092 27.595969638966128 22.51141149637822 74-75 22.028075348505713 27.855422115493823 27.562785571312236 22.553716964688224 76-77 22.176558342064077 27.76914716122205 27.500833422743078 22.553461073970794 78-79 22.172293709905695 27.7554488152976 27.450422346820492 22.621835127976208 80-81 22.19602477844029 27.76876728646605 27.431569211519463 22.603638723574196 82-83 22.255457397371714 27.651356850044913 27.602232466455245 22.49095328612813 84-85 22.323356620681658 27.704167648596822 27.4513261112238 22.52114961949772 86-87 22.13653518341373 27.73398008828628 27.56356838867127 22.565916339628718 88-89 22.26866637615395 27.59422223130532 27.537992292151948 22.599119100388783 90-91 22.24979784391186 27.57160611786695 27.67022868865425 22.508367349566942 92-93 22.23583642576208 27.4997380088763 27.693962727150478 22.57046283821113 94-95 22.062178566837343 27.54369277159506 27.795468193352857 22.59866046821474 96-97 22.04924053342788 27.597366346271972 27.81326603023145 22.540127090068697 98-99 22.183293445158924 28.2599218721608 27.88757309308551 21.669211589594767 100-101 26.176178858573497 35.417261817419885 28.646019071000783 9.760540253005829 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2884.0 1 2728.5 2 4112.0 3 6062.0 4 8273.5 5 12972.0 6 16852.5 7 19639.0 8 21482.5 9 21431.5 10 20167.5 11 18569.5 12 20115.5 13 26426.5 14 40820.5 15 60144.0 16 74598.0 17 81182.5 18 82797.0 19 81528.5 20 78565.5 21 76165.5 22 77228.0 23 85890.0 24 103377.0 25 128954.5 26 162067.5 27 197406.5 28 233378.0 29 272376.0 30 305603.0 31 335569.5 32 369940.5 33 403727.0 34 438137.0 35 473114.0 36 508729.0 37 541351.5 38 565700.5 39 584952.0 40 605274.5 41 624546.5 42 638085.5 43 652348.0 44 669581.5 45 684010.0 46 691090.0 47 695205.5 48 693525.5 49 680614.0 50 665100.5 51 647983.5 52 621278.0 53 589416.0 54 553547.0 55 511194.0 56 469083.0 57 424501.5 58 379074.0 59 332389.0 60 281680.5 61 231593.5 62 184849.0 63 145013.5 64 110186.0 65 82117.5 66 62141.0 67 48198.5 68 37232.0 69 26885.5 70 19093.5 71 13529.5 72 9145.5 73 6128.0 74 4186.0 75 2859.0 76 1951.5 77 1312.5 78 902.0 79 600.0 80 422.5 81 314.0 82 236.0 83 168.0 84 117.5 85 87.5 86 67.0 87 53.0 88 35.5 89 24.0 90 17.5 91 14.0 92 13.0 93 9.5 94 5.5 95 3.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019669487678593695 3 6.365529993072393E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0022089477406888876 22-23 3.819960304882492E-4 24-25 0.0012067771970564953 26-27 0.011311504794233661 28-29 2.58155260118993E-4 30-31 0.00239060454750436 32-33 0.0026379043744938083 34-35 0.001630131203698205 36-37 0.06345795913443344 38-39 0.029140065591115913 40-41 0.026610610497856166 42-43 0.003527979878721444 44-45 0.0017532448769594661 46-47 0.0035102526893166946 48-49 0.0029064896370826787 50-51 7.051663892719845E-4 52-53 0.0010224174250601753 54-55 0.001501633978944936 56-57 0.011561473632634666 58-59 0.008891460237397194 60-61 0.00463978881745093 62-63 0.0026988954201905353 64-65 0.0012989428104303261 66-67 5.578375314963652E-4 68-69 0.0018189955926410492 70-71 4.0274219103028704E-5 72-73 7.07957503725473E-4 74-75 3.0347770904261723E-4 76-77 0.005945271054499248 78-79 0.0015600924399897334 80-81 6.738315378275242E-4 82-83 4.5439959713466303E-4 84-85 0.0029196362858563297 86-87 0.0033933445940050174 88-89 0.043181534909169095 90-91 3.700014545381856E-4 92-93 4.7165549457279285E-4 94-95 3.471711388682543E-4 96-97 0.01996819703142926 98-99 2.1185766250596326E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 484.0 20-21 1538.0 22-23 2874.0 24-25 6402.0 26-27 7717.0 28-29 15477.0 30-31 43106.0 32-33 61438.0 34-35 88547.0 36-37 137174.0 38-39 145575.0 40-41 150575.0 42-43 170664.0 44-45 198556.0 46-47 199098.0 48-49 185307.0 50-51 170858.0 52-53 162594.0 54-55 176557.0 56-57 181793.0 58-59 181977.0 60-61 187634.0 62-63 176632.0 64-65 189900.0 66-67 199873.0 68-69 202005.0 70-71 199253.0 72-73 190981.0 74-75 193793.0 76-77 196148.0 78-79 206210.0 80-81 206204.0 82-83 195518.0 84-85 196298.0 86-87 205385.0 88-89 214204.0 90-91 227567.0 92-93 232539.0 94-95 277875.0 96-97 341131.0 98-99 1176943.0 100-101 8205207.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.55639882651877 #Duplication Level Percentage of deduplicated Percentage of total 1 89.86511583261057 75.98670574933526 2 6.813290913623356 11.522146876268659 3 1.8018263779223689 4.570678494832366 4 0.6756297009052897 2.2851525779515707 5 0.335054555469082 1.416550331044283 6 0.17822353290898316 0.9041964077353905 7 0.09406330200064042 0.5567557855233803 8 0.06381854366914474 0.4317012984812646 9 0.039978178467496614 0.304236972256985 >10 0.12964255884012313 1.7013487205534032 >50 0.0023961412425519326 0.13936396062858006 >100 8.835974621424792E-4 0.10670314642242727 >500 3.840565871813665E-5 0.0240771146676851 >1k 3.8359219550391684E-5 0.05038256429877228 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.3655299930723935E-6 2 0.0 5.7289769937651544E-5 0.0 0.0 6.3655299930723935E-6 3 0.0 6.365529993072393E-5 0.0 0.0 6.3655299930723935E-6 4 0.0 1.2731059986144787E-4 0.0 0.0 6.3655299930723935E-6 5 0.0 1.4004165984759267E-4 0.0 0.0 6.3655299930723935E-6 6 0.0 1.4004165984759267E-4 0.0 6.3655299930723935E-6 1.909658997921718E-5 7 0.0 1.4004165984759267E-4 0.0 6.3655299930723935E-6 1.909658997921718E-5 8 0.0 1.5277271983373745E-4 0.0 6.3655299930723935E-6 2.5462119972289574E-5 9 0.0 3.373730896328369E-4 0.0 1.2731059986144787E-5 5.092423994457915E-5 10-11 3.1827649965361968E-6 3.4055585462937306E-4 0.0 2.8644884968825772E-5 5.092423994457915E-5 12-13 6.3655299930723935E-6 3.4373861962590924E-4 0.0 3.819317995843436E-5 5.092423994457915E-5 14-15 6.3655299930723935E-6 4.073939195566332E-4 0.0 3.819317995843436E-5 9.230018489954971E-5 16-17 6.3655299930723935E-6 4.2330774453931414E-4 0.0 5.7289769937651544E-5 1.2094506986837548E-4 18-19 6.3655299930723935E-6 4.7423198448389337E-4 0.0 1.0503124488569449E-4 1.3685889485105646E-4 20-21 6.3655299930723935E-6 5.315217544215448E-4 0.0 2.959971446778663E-4 1.4004165984759267E-4 22-23 6.3655299930723935E-6 6.397357643037755E-4 0.0 6.747461792656736E-4 1.6550377981988223E-4 24-25 6.3655299930723935E-6 7.097565942275719E-4 0.0 0.0019351211178940076 2.0051419478178038E-4 26-27 6.3655299930723935E-6 7.193048892171805E-4 0.0 0.00497147892458954 2.164280197644614E-4 28-29 6.3655299930723935E-6 7.224876542137167E-4 0.0 0.023787985584111535 2.2597631475407E-4 30-31 6.3655299930723935E-6 8.147878391132664E-4 0.0 0.034450248322507794 2.3552460974367857E-4 32-33 6.3655299930723935E-6 8.275188990994112E-4 0.0 0.03962542420687565 2.4825566972982337E-4 34-35 6.3655299930723935E-6 0.0010121192688985106 0.0 0.04761734711317804 2.5780396471943197E-4 36-37 6.3655299930723935E-6 0.00119671963869761 0.0 0.058639262296182895 2.6098672971596815E-4 38-39 6.3655299930723935E-6 0.001228547288662972 0.0 0.07802548389008487 2.769005546986491E-4 40-41 6.3655299930723935E-6 0.001359040653520956 0.0 0.11945871861499308 2.864488496882577E-4 42-43 6.3655299930723935E-6 0.001406782128468999 0.0 0.13686844314604607 2.9917990967440254E-4 44-45 6.3655299930723935E-6 0.001604113558254243 0.0 0.16202183491367164 3.119109696605473E-4 46-47 6.3655299930723935E-6 0.0017568862780879806 0.0 0.19018612236802043 3.373730896328369E-4 48-49 6.3655299930723935E-6 0.0017664345730775892 0.0 0.21534587966563906 3.6283520960512643E-4 50-51 6.3655299930723935E-6 0.0019796798278455146 0.0 0.23885696469505197 3.6283520960512643E-4 52-53 6.3655299930723935E-6 0.001989228122835123 0.0 0.27036952092575683 3.851145645808798E-4 54-55 6.3655299930723935E-6 0.002021055772800485 0.0 0.3347632223356772 4.073939195566332E-4 56-57 6.3655299930723935E-6 0.0020719800127450643 0.0 0.40061144734901455 4.073939195566332E-4 58-59 6.3655299930723935E-6 0.002087893837727745 0.0 0.46565443281822827 4.073939195566332E-4 60-61 6.3655299930723935E-6 0.002119721487693107 0.0 0.5078006069023606 4.137594495497056E-4 62-63 6.3655299930723935E-6 0.002138818077672324 0.0 0.5297616853784604 4.328560395289228E-4 64-65 6.3655299930723935E-6 0.002317052917478351 0.0 0.5515286151897714 4.36038804525459E-4 66-67 6.3655299930723935E-6 0.0023552460974367857 0.0 0.5636390360015917 4.5195262950813994E-4 68-69 6.3655299930723935E-6 0.00239343927739522 0.0 0.5743840506298978 4.646836894942847E-4 70-71 6.3655299930723935E-6 0.002415718632370973 0.0 0.584689843688682 4.869630444700381E-4 72-73 1.2731059986144787E-5 0.002437997987346727 0.0 0.5929904947996485 5.601666393903707E-4 74-75 1.2731059986144787E-5 0.0025112015822670595 0.0 0.600247198991751 5.601666393903707E-4 76-77 1.2731059986144787E-5 0.0026416949471250433 0.0 0.6072588302791202 5.601666393903707E-4 78-79 1.2731059986144787E-5 0.0026862536570765503 0.0 0.6135829843272376 5.601666393903707E-4 80-81 1.2731059986144787E-5 0.0026862536570765503 0.0 0.6174086678530741 5.824459943661241E-4 82-83 1.2731059986144787E-5 0.002698984717062695 0.0 0.6199803419702754 6.397357643037755E-4 84-85 1.2731059986144787E-5 0.0027085330120523035 0.0 0.6220236770980516 6.46101294296848E-4 86-87 1.2731059986144787E-5 0.0027403606620176654 0.0 0.6223101259477399 6.588323542829927E-4 88-89 1.5913824982680983E-5 0.002813564256937998 0.0 0.6223324053027156 6.715634142691376E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17330 0.0 43.767952 1 GTATCAA 28790 0.0 31.654617 1 ATCAACG 34995 0.0 25.309565 3 TCAACGC 35485 0.0 25.051714 4 CAACGCA 35630 0.0 24.869904 5 AACGCAG 36870 0.0 24.165781 6 TATCAAC 37490 0.0 23.972672 2 GTACATG 45200 0.0 22.239693 1 TACATGG 44705 0.0 21.83128 2 ACATGGG 44985 0.0 21.234089 3 ACGCAGA 43785 0.0 20.247145 7 CGCAGAG 44230 0.0 20.043436 8 CATGGGG 32400 0.0 18.880999 4 GTGGTAT 8720 0.0 17.247587 1 GCAGAGT 53145 0.0 16.635288 9 AGAGTAC 47195 0.0 16.60952 10-11 GAGTACT 29745 0.0 16.268553 12-13 CAGAGTA 51315 0.0 15.858174 10-11 TGGTATC 8735 0.0 15.775384 2 ATGGGGG 20400 0.0 15.103322 5 >>END_MODULE