##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139298_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8987937 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.121253297614345 33.0 31.0 34.0 30.0 34.0 2 32.25729252441356 33.0 31.0 34.0 30.0 34.0 3 32.974230460226856 34.0 31.0 34.0 30.0 37.0 4 35.8378863803785 37.0 35.0 37.0 35.0 37.0 5 35.74541009800136 37.0 35.0 37.0 33.0 37.0 6 35.74544024952556 37.0 35.0 37.0 33.0 37.0 7 35.705840951043605 37.0 35.0 37.0 33.0 37.0 8 35.94911924727554 37.0 35.0 37.0 33.0 39.0 9 37.19420708000067 39.0 37.0 39.0 33.0 39.0 10-11 37.13522480186499 39.0 37.0 39.0 33.0 39.0 12-13 37.24216458126042 39.0 37.0 39.0 33.0 39.5 14-15 38.27208101258387 40.0 38.0 41.0 33.0 41.0 16-17 38.26893791089101 40.0 38.0 41.0 33.0 41.0 18-19 38.30800772190548 40.0 38.0 41.0 33.5 41.0 20-21 38.2720606206896 40.0 38.0 41.0 33.0 41.0 22-23 38.18994155009376 40.0 38.0 41.0 33.0 41.0 24-25 38.100122890609626 40.0 37.0 41.0 33.0 41.0 26-27 37.933062067071326 40.0 37.0 41.0 33.0 41.0 28-29 37.83441108673024 40.0 37.0 41.0 33.0 41.0 30-31 37.739549426873104 40.0 37.0 41.0 32.5 41.0 32-33 37.89957528021186 40.0 37.0 41.0 33.0 41.0 34-35 37.8801444393515 40.0 37.0 41.0 33.0 41.0 36-37 37.7841829693698 40.0 37.0 41.0 33.0 41.0 38-39 37.64118714550722 40.0 37.0 41.0 32.0 41.0 40-41 37.660976576384044 40.0 37.0 41.0 32.0 41.0 42-43 37.62850934177155 40.0 37.0 41.0 32.0 41.0 44-45 37.61572375973614 40.0 37.0 41.0 32.0 41.0 46-47 37.61749561405348 40.0 37.0 41.0 32.0 41.0 48-49 37.53347290641486 40.0 36.0 41.0 32.0 41.0 50-51 37.44105723545414 39.5 36.0 41.0 31.5 41.0 52-53 37.30658777577445 39.0 36.0 41.0 31.0 41.0 54-55 37.194395725690754 39.0 36.0 41.0 31.0 41.0 56-57 37.047250309304545 39.0 35.0 40.5 31.0 41.0 58-59 36.89261307460434 39.0 35.0 40.0 31.0 41.0 60-61 36.68320724873214 38.0 35.0 40.0 31.0 41.0 62-63 36.445395052308015 38.0 35.0 40.0 30.5 41.0 64-65 36.22202865188744 37.5 35.0 40.0 30.0 41.0 66-67 35.93066771022396 37.0 34.0 40.0 30.0 41.0 68-69 35.645264300636754 36.5 34.0 39.0 30.0 41.0 70-71 35.365354773689 36.0 34.0 39.0 29.0 40.5 72-73 35.06449025004508 36.0 34.0 39.0 29.0 40.0 74-75 34.63064865546633 35.0 33.5 37.5 29.0 40.0 76-77 33.793016670060496 35.0 32.5 37.0 28.5 39.0 78-79 34.06720581961906 35.0 33.0 37.0 29.0 39.0 80-81 33.95911073919685 35.0 33.0 36.0 29.0 39.0 82-83 33.756914925749726 35.0 33.0 36.0 29.0 37.5 84-85 33.557343995112745 35.0 33.0 35.5 29.0 37.0 86-87 33.365782626522865 35.0 33.0 35.0 29.0 37.0 88-89 33.18035015833182 35.0 33.0 35.0 29.0 36.0 90-91 33.094640606418324 35.0 33.0 35.0 29.0 36.0 92-93 33.037706163792755 34.5 33.0 35.0 29.0 36.0 94-95 32.99519901295957 34.0 33.0 35.0 29.0 35.5 96-97 32.945338506852494 34.0 32.5 35.0 29.0 35.0 98-99 33.05866067287704 34.0 33.0 35.0 29.0 35.0 100-101 32.48168545721727 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 2.0 19 14.0 20 104.0 21 446.0 22 1993.0 23 6413.0 24 16230.0 25 33438.0 26 58585.0 27 90717.0 28 128192.0 29 168357.0 30 213805.0 31 264963.0 32 326578.0 33 411949.0 34 540234.0 35 726517.0 36 1082306.0 37 1727695.0 38 1995052.0 39 1127491.0 40 66855.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.0777744448974 0.010736671395994253 24.520599277605594 31.39088960610101 2 14.881155963119017 25.43766404126469 36.47156210119684 23.209617894419456 3 16.120779258058636 25.079033735672734 33.69007827605321 25.11010873021542 4 13.006466333709282 23.816043659407047 36.921576108065736 26.25591389881794 5 17.148295543237563 37.20414373175958 32.24013474949813 13.407425975504724 6 28.066295969809314 37.4835960688198 20.33289730446486 14.117210656906028 7 26.037754826274373 32.89415580015748 22.752039761738427 18.316049611829722 8 24.556714182576044 31.78020718213757 22.44564019529732 21.217438439989063 9 23.870238520808503 19.906915235387164 23.848431514373097 32.37441472943124 10-11 24.93701974863752 25.919275241875596 28.841931626909023 20.30177338257786 12-13 24.78871402859188 24.132284193803315 28.77047869828193 22.308523079322875 14-15 22.2355697419775 26.719379541712406 26.52935262007288 24.515698096237212 16-17 21.5544882359247 28.694626257609436 27.717266106326644 22.03361940013922 18-19 21.54887184081382 28.016311011362365 29.215521150842978 21.219295996980836 20-21 22.415471633682195 27.45195977694807 28.8932040217711 21.23936456759863 22-23 22.20023029942542 27.175838535564957 28.68930470884149 21.934626456168132 24-25 21.88079837322036 27.40452451565486 28.940642413208593 21.774034697916182 26-27 21.825203612206145 27.665224983781695 28.723829690997064 21.785741713015092 28-29 21.827470378982166 27.59519585453718 28.717093106665537 21.860240659815116 30-31 22.07730556842402 27.51438935054039 28.719100980539753 21.689204100495832 32-33 21.91664157443907 27.831340553730406 28.55351475840486 21.69850311342567 34-35 22.061580707621896 27.62873015314205 28.523620489350463 21.786068649885586 36-37 22.00738151728816 27.64683028479104 28.611747831231348 21.734040366689452 38-39 21.815326464869763 27.921958446707617 28.54272944749195 21.71998564093067 40-41 22.095572859924104 27.570778327149302 28.416883808995326 21.916765003931268 42-43 21.976651390693412 27.58520075894446 28.43245336228103 22.005694488081097 44-45 22.027427358300415 28.025447873212617 27.997748634400775 21.94937613408619 46-47 22.17767610099121 27.730755046696885 27.81379372648809 22.27777512582382 48-49 22.082922449736543 27.870117237561367 27.922721362217157 22.124238950484937 50-51 22.04913944618148 28.095501205659595 27.670403118520266 22.18495622963866 52-53 22.24655651846187 27.841501852809035 27.57152874756149 22.3404128811676 54-55 22.205919133291136 27.736899570073447 27.763300751039928 22.293880545595492 56-57 22.220623932159537 28.056755639777244 27.53183388118286 22.190786546880364 58-59 22.266833065843503 27.90538377387235 27.575354066993192 22.252429093290957 60-61 22.25382220443996 27.89729293510374 27.649781358659446 22.199103501796852 62-63 22.231780506646544 28.05344368018036 27.52312024286452 22.191655570308576 64-65 22.2658634578438 27.768197500932168 27.555765673520334 22.4101733677037 66-67 22.268686731629035 27.895094207717648 27.44653056620673 22.389688494446595 68-69 22.232251351164937 27.983320517809606 27.51591580186718 22.268512329158284 70-71 22.29310684765737 27.51528599335069 27.616271265507912 22.575335893484027 72-73 22.26198182180248 27.734444877023414 27.563542760088268 22.440030541085846 74-75 22.082222967335564 27.88407909523183 27.55376098446464 22.479936952967975 76-77 22.352587246566607 27.684807255375578 27.394824406693758 22.567781091364058 78-79 22.19518465470199 27.80206997248681 27.48874223389634 22.51400313891486 80-81 22.22412260478042 27.84417709191275 27.4206505271739 22.511049776132925 82-83 22.394942316619943 27.548759320008102 27.572676506269765 22.483621857102186 84-85 22.436240426870775 27.63013468396868 27.530043481962487 22.40358140719806 86-87 22.20905725186966 27.75179170513691 27.509414636167346 22.529736406826093 88-89 22.340098541976797 27.562239138357157 27.507608694544665 22.590053625121378 90-91 22.3321158569347 27.560269939378312 27.62267333945281 22.484940864234176 92-93 22.266794445303937 27.622277969306673 27.59277420504708 22.51815338034231 94-95 22.335902492268907 27.487224961620964 27.59289983519925 22.583972710910878 96-97 22.10424572596018 27.661718724459757 27.766622789893887 22.467412759686177 98-99 22.52265782073403 28.794766758450642 27.764145782526857 20.918429638288476 100-101 26.681395296221456 35.72569254578358 28.554667769893715 9.03824438810125 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2105.0 1 1974.5 2 2842.0 3 4092.5 4 5580.5 5 8781.5 6 11284.5 7 13032.0 8 14090.0 9 13915.0 10 13025.5 11 12045.0 12 13239.5 13 16882.0 14 25465.0 15 38387.0 16 49003.0 17 53785.5 18 53963.5 19 51959.0 20 48939.0 21 45991.5 22 45420.0 23 49979.0 24 59954.5 25 74497.5 26 94060.0 27 114152.0 28 132985.5 29 154200.0 30 173014.5 31 189869.5 32 208915.5 33 228471.0 34 249066.5 35 269204.0 36 290723.5 37 309434.5 38 322060.5 39 331749.5 40 342615.5 41 354347.5 42 362728.0 43 371987.5 44 382714.5 45 390883.0 46 395106.0 47 397784.0 48 397971.0 49 393305.5 50 386184.5 51 376834.5 52 363077.5 53 347125.5 54 330131.0 55 307243.5 56 281652.5 57 256744.5 58 231645.5 59 204793.5 60 174866.5 61 144900.5 62 116563.5 63 91729.5 64 70026.5 65 52723.0 66 40250.5 67 31274.0 68 24249.0 69 17521.0 70 12151.5 71 8533.0 72 5810.5 73 3873.5 74 2592.5 75 1759.5 76 1255.5 77 871.0 78 607.0 79 425.0 80 280.5 81 188.5 82 145.5 83 105.5 84 75.0 85 50.5 86 35.5 87 28.0 88 21.0 89 13.0 90 7.5 91 5.5 92 6.0 93 4.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 5.451751608850841E-4 2 0.0011904845349939592 3 3.3378071074596984E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.563011845766165E-6 12-13 0.0 14-15 0.0 16-17 1.6689035537298492E-5 18-19 2.336464975221789E-4 20-21 0.0020473064651434668 22-23 6.009226499598299E-4 24-25 0.0025546488932860264 26-27 0.009917396605989573 28-29 4.0126713473363307E-4 30-31 0.0027082606360794037 32-33 0.002925239453545096 34-35 0.004100518349453496 36-37 0.06284654851386898 38-39 0.026751152281221144 40-41 0.023059740557334854 42-43 0.0029675628374099886 44-45 0.0017950686610790894 46-47 0.0037293597588443908 48-49 0.002376285406576002 50-51 7.513582352495183E-4 52-53 0.0011010714368856415 54-55 0.0022835001106987275 56-57 0.013340561358652999 58-59 0.008029307102336082 60-61 0.0047092021010778865 62-63 0.0027417164959536323 64-65 0.0010718008308242774 66-67 5.095225933834513E-4 68-69 0.001475963229214535 70-71 2.237216060295715E-4 72-73 5.5030002724352E-4 74-75 8.727447194841826E-4 76-77 0.004848113681665117 78-79 0.001297374538669445 80-81 8.181892920263126E-4 82-83 9.377629192671888E-4 84-85 0.0030364374948117323 86-87 0.011762231889323887 88-89 0.032781102195383174 90-91 4.3371649583441336E-4 92-93 5.591837408540173E-4 94-95 0.002020267652702886 96-97 0.01621161130830333 98-99 1.1035332928971982E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 311.0 20-21 1059.0 22-23 1881.0 24-25 4173.0 26-27 6296.0 28-29 13745.0 30-31 28912.0 32-33 41253.0 34-35 60052.0 36-37 88851.0 38-39 94871.0 40-41 95332.0 42-43 108895.0 44-45 124915.0 46-47 124305.0 48-49 113860.0 50-51 106458.0 52-53 105961.0 54-55 113159.0 56-57 115644.0 58-59 113808.0 60-61 111463.0 62-63 107627.0 64-65 112329.0 66-67 117233.0 68-69 118033.0 70-71 115378.0 72-73 111192.0 74-75 112610.0 76-77 114050.0 78-79 118580.0 80-81 119104.0 82-83 112667.0 84-85 114178.0 86-87 118293.0 88-89 125028.0 90-91 130408.0 92-93 134461.0 94-95 160546.0 96-97 239347.0 98-99 950095.0 100-101 4181574.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.98799026499017 #Duplication Level Percentage of deduplicated Percentage of total 1 90.99224327140432 79.15232371882537 2 6.427140714028133 11.181681077272025 3 1.5157010560078379 3.955433661139354 4 0.4938469973617934 1.7183503119560923 5 0.22402857505605467 0.9743897753027854 6 0.12174018206946825 0.6353960263630222 7 0.06488846758252714 0.39511621704653016 8 0.03923033064436808 0.27300540961477093 9 0.027425142013194192 0.21470921878137386 >10 0.09085133762318442 1.2211263000998698 >50 0.002292869893186296 0.13471928566231084 >100 5.334974235948723E-4 0.07845835884693975 >500 3.8780148491240765E-5 0.020915075046504347 >1k 3.8778743820985E-5 0.044375564043137083 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.675614214919397E-5 0.0 0.0 0.0 3 0.0 6.675614214919397E-5 0.0 0.0 0.0 4 0.0 6.675614214919397E-5 0.0 1.1126023691532328E-5 0.0 5 0.0 6.675614214919397E-5 0.0 1.1126023691532328E-5 0.0 6 0.0 6.675614214919397E-5 0.0 1.1126023691532328E-5 1.1126023691532328E-5 7 0.0 6.675614214919397E-5 0.0 1.1126023691532328E-5 1.1126023691532328E-5 8 0.0 8.900818953225862E-5 0.0 1.1126023691532328E-5 1.1126023691532328E-5 9 1.1126023691532328E-5 2.336464975221789E-4 0.0 3.3378071074596984E-5 2.2252047383064655E-5 10-11 2.2252047383064655E-5 2.336464975221789E-4 0.0 7.78821658407263E-5 2.2252047383064655E-5 12-13 2.2252047383064655E-5 2.336464975221789E-4 0.0 8.344517768649246E-5 2.2252047383064655E-5 14-15 2.2252047383064655E-5 3.226546870544375E-4 0.0 9.45712013780248E-5 3.3378071074596984E-5 16-17 3.3378071074596984E-5 3.4490673443750216E-4 0.0 1.0013421322379096E-4 3.3378071074596984E-5 18-19 3.3378071074596984E-5 3.4490673443750216E-4 0.0 1.0013421322379096E-4 3.3378071074596984E-5 20-21 3.3378071074596984E-5 3.504697462832683E-4 0.0 2.169574619848804E-4 3.3378071074596984E-5 22-23 3.3378071074596984E-5 3.782848055120992E-4 0.0 2.447725212137112E-4 4.450409476612932E-5 24-25 4.450409476612931E-5 4.0053685289516384E-4 0.0 2.948396278256067E-4 6.11931303034278E-5 26-27 4.450409476612931E-5 4.227889002782285E-4 0.0 4.2835191212399465E-4 8.900818953225863E-5 28-29 4.450409476612931E-5 4.227889002782285E-4 0.0 0.001012468155929442 1.0013421322379096E-4 30-31 4.450409476612931E-5 4.951080542731886E-4 1.1126023691532328E-5 0.002469977259520177 1.0569722506955712E-4 32-33 5.006710661189548E-5 5.006710661189548E-4 1.1126023691532328E-5 0.005262609206094791 1.223862606068556E-4 34-35 6.675614214919397E-5 6.230573267258105E-4 1.1126023691532328E-5 0.009635136516866996 1.3351228429838794E-4 36-37 7.78821658407263E-5 7.45443587332666E-4 1.1126023691532328E-5 0.01574888653536401 1.390752961441541E-4 38-39 7.78821658407263E-5 7.676956347157307E-4 1.1126023691532328E-5 0.024510630192445718 1.4463830798992026E-4 40-41 7.78821658407263E-5 8.344517768649247E-4 1.1126023691532328E-5 0.03346707926412924 1.557643316814526E-4 42-43 7.78821658407263E-5 0.0010069051440836758 1.1126023691532328E-5 0.04211756268429563 1.557643316814526E-4 44-45 1.3351228429838794E-4 0.0011682324876108945 1.1126023691532328E-5 0.05235350448050537 1.557643316814526E-4 46-47 1.4463830798992026E-4 0.0011682324876108945 1.1126023691532328E-5 0.06340720901804274 1.557643316814526E-4 48-49 1.557643316814526E-4 0.001184921523148193 1.1126023691532328E-5 0.07420501501067486 1.557643316814526E-4 50-51 1.557643316814526E-4 0.0012405516416058547 1.1126023691532328E-5 0.08463009920964065 1.6132734352721875E-4 52-53 1.557643316814526E-4 0.0012461146534516207 1.1126023691532328E-5 0.09517200665736754 1.6689035537298491E-4 54-55 1.557643316814526E-4 0.001257240677143153 1.1126023691532328E-5 0.10628134131336256 1.6689035537298491E-4 56-57 1.557643316814526E-4 0.0012794927245262178 1.1126023691532328E-5 0.11769664162087473 1.7801637906451727E-4 58-59 1.557643316814526E-4 0.0012794927245262178 1.1126023691532328E-5 0.1284165654476661 1.9470541460181576E-4 60-61 1.557643316814526E-4 0.0013351228429838793 1.1126023691532328E-5 0.13916986734553213 2.0026842644758192E-4 62-63 1.557643316814526E-4 0.0013740639259042426 1.1126023691532328E-5 0.14960607756818944 2.0026842644758192E-4 64-65 1.6132734352721875E-4 0.0014463830798992026 1.1126023691532328E-5 0.1604316986200504 2.0026842644758192E-4 66-67 1.7245336721875108E-4 0.0014797611509737997 1.1126023691532328E-5 0.17102923618623495 2.0026842644758192E-4 68-69 1.7801637906451724E-4 0.001524265245739929 1.1126023691532328E-5 0.1816545888116483 2.0026842644758192E-4 70-71 1.7801637906451724E-4 0.0015687693405060583 1.1126023691532328E-5 0.19194616072631573 2.0026842644758192E-4 72-73 1.7801637906451724E-4 0.0015687693405060583 1.1126023691532328E-5 0.20115294533105874 2.1139445013911425E-4 74-75 1.7801637906451724E-4 0.001591021387889123 1.1126023691532328E-5 0.20904685914020094 2.169574619848804E-4 76-77 1.7801637906451724E-4 0.0016522145181925509 1.1126023691532328E-5 0.21629546357523421 2.2252047383064657E-4 78-79 1.7801637906451724E-4 0.0016689035537298493 1.1126023691532328E-5 0.22219225613174637 2.2252047383064657E-4 80-81 1.7801637906451724E-4 0.0016744665655756153 1.1126023691532328E-5 0.22580265081964862 2.336464975221789E-4 82-83 1.7801637906451724E-4 0.001691155601112914 1.1126023691532328E-5 0.22836163626870104 2.447725212137112E-4 84-85 1.7801637906451724E-4 0.0017245336721875108 1.1126023691532328E-5 0.23016961511857503 2.447725212137112E-4 86-87 1.7801637906451724E-4 0.0017245336721875108 1.1126023691532328E-5 0.2304199506516345 2.447725212137112E-4 88-89 1.8357939091028343E-4 0.0017746007787994064 1.1126023691532328E-5 0.23045332872270913 2.447725212137112E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10585 0.0 46.45413 1 GTATCAA 17685 0.0 31.831148 1 ATCAACG 22225 0.0 24.859697 3 TCAACGC 23295 0.0 23.717827 4 CAACGCA 23630 0.0 23.33079 5 TATCAAC 24315 0.0 23.069181 2 AACGCAG 23955 0.0 23.04766 6 ACGCAGA 24415 0.0 22.597036 7 ACATGGG 27030 0.0 21.15096 3 GTACATG 28455 0.0 21.119062 1 TACATGG 27970 0.0 21.084507 2 GTGGTAT 4710 0.0 19.112823 1 CGCAGAG 29610 0.0 18.672977 8 CATGGGG 19405 0.0 17.79267 4 AGAGTAC 30850 0.0 16.482927 10-11 TGGTATC 4900 0.0 16.24858 2 GAGTACT 19215 0.0 16.084385 12-13 GCAGAGT 34700 0.0 15.749442 9 CAGAGTA 33115 0.0 15.470301 10-11 GAGTACA 20365 0.0 14.911476 1 >>END_MODULE