##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139297_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14538172 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.989869290306924 33.0 31.0 34.0 30.0 34.0 2 32.143308525996254 33.0 31.0 34.0 30.0 34.0 3 32.21145684615645 34.0 31.0 34.0 30.0 34.0 4 35.874904148884745 37.0 35.0 37.0 35.0 37.0 5 35.75504355017949 37.0 35.0 37.0 35.0 37.0 6 35.768049105485886 37.0 35.0 37.0 33.0 37.0 7 35.647921279236485 37.0 35.0 37.0 33.0 37.0 8 35.63649026851519 37.0 35.0 37.0 33.0 37.0 9 37.21159606586028 39.0 37.0 39.0 33.0 39.0 10-11 37.128997648397615 39.0 37.0 39.0 33.0 39.0 12-13 37.088071285715976 39.0 37.0 39.0 33.0 39.0 14-15 38.277953170453614 40.0 38.0 41.0 33.0 41.0 16-17 38.28138465413671 40.0 38.0 41.0 33.0 41.0 18-19 38.31958233813715 40.0 38.0 41.0 33.5 41.0 20-21 38.2885028626401 40.0 38.0 41.0 33.0 41.0 22-23 38.2016304550626 40.0 38.0 41.0 33.0 41.0 24-25 38.12776480356257 40.0 37.0 41.0 33.0 41.0 26-27 37.95844985733838 40.0 37.0 41.0 33.0 41.0 28-29 37.85818707014788 40.0 37.0 41.0 33.0 41.0 30-31 37.741425860988855 40.0 37.0 41.0 32.5 41.0 32-33 37.91290980494861 40.0 37.0 41.0 33.0 41.0 34-35 37.89896263362442 40.0 37.0 41.0 33.0 41.0 36-37 37.82732370117325 40.0 37.0 41.0 33.0 41.0 38-39 37.655626687152434 40.0 37.0 41.0 32.0 41.0 40-41 37.6757120480124 40.0 37.0 41.0 32.5 41.0 42-43 37.64658661612502 40.0 37.0 41.0 32.0 41.0 44-45 37.621447846925165 40.0 37.0 41.0 32.0 41.0 46-47 37.63738942351263 40.0 37.0 41.0 32.0 41.0 48-49 37.54849924167078 40.0 36.0 41.0 32.0 41.0 50-51 37.46299045895258 39.5 36.0 41.0 32.0 41.0 52-53 37.31587365335617 39.0 36.0 41.0 31.0 41.0 54-55 37.208668893708904 39.0 36.0 41.0 31.0 41.0 56-57 37.062829090039514 39.0 35.0 40.5 31.0 41.0 58-59 36.91101595401235 39.0 35.0 40.0 31.0 41.0 60-61 36.699632799086345 38.0 35.0 40.0 31.0 41.0 62-63 36.44924935323235 38.0 35.0 40.0 30.5 41.0 64-65 36.238225456755 38.0 35.0 40.0 30.0 41.0 66-67 35.94042282206608 37.0 34.0 40.0 30.0 41.0 68-69 35.654550181243366 37.0 34.0 39.0 30.0 41.0 70-71 35.375137232301384 36.0 34.0 39.0 29.0 41.0 72-73 35.08155181674229 36.0 34.0 39.0 29.0 40.0 74-75 34.7506012671105 35.0 34.0 38.0 29.0 40.0 76-77 33.70555609038517 35.0 32.5 37.0 28.0 39.0 78-79 34.0450040867556 35.0 33.0 37.0 29.0 39.0 80-81 33.95679097710784 35.0 33.0 36.0 29.0 39.0 82-83 33.761628895690436 35.0 33.0 36.0 29.0 37.5 84-85 33.56461869817693 35.0 33.0 36.0 29.0 37.0 86-87 33.37655095088218 35.0 33.0 35.0 29.0 37.0 88-89 33.179362971521314 35.0 33.0 35.0 29.0 36.0 90-91 33.08570863076005 35.0 33.0 35.0 29.0 36.0 92-93 33.0235031304248 34.5 33.0 35.0 29.0 36.0 94-95 32.98590316181153 34.0 33.0 35.0 29.0 35.5 96-97 32.918795457964535 34.0 32.0 35.0 29.0 35.0 98-99 33.04558450320198 34.0 32.5 35.0 29.0 35.0 100-101 32.55004934516328 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 1.0 18 1.0 19 31.0 20 123.0 21 694.0 22 3056.0 23 10161.0 24 25708.0 25 54304.0 26 96983.0 27 150339.0 28 212274.0 29 278869.0 30 351818.0 31 434279.0 32 536094.0 33 674381.0 34 883676.0 35 1195839.0 36 1789294.0 37 2860758.0 38 3241080.0 39 1669749.0 40 68659.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.78117744101528 21.438314252988615 13.545458122245355 25.23505018375075 2 14.556559933734611 22.948999670241367 39.31203021948278 23.182410176541243 3 17.304357186756373 27.466121068236603 31.21270119028089 24.016820554726127 4 12.121833473974581 18.591539569073745 38.933725643086355 30.35290131386532 5 12.505884508726407 38.62319829480626 36.12632317185407 12.744594024613273 6 29.60079850479139 38.84991868303663 18.757839706395 12.791443105776985 7 25.811587591617435 32.88292365780237 24.18248318977104 17.12300556080916 8 24.81862919217079 36.63017606340054 21.6267217088916 16.92447303553707 9 26.1240409041797 15.429051190204657 21.133860570641204 37.313047334974435 10-11 24.254589916806594 26.666395885259853 29.496775798222775 19.582238399710775 12-13 24.78995639892003 24.40157194453333 29.49892875115248 21.309542905394157 14-15 22.022624302422617 25.55981591083116 26.792020344786128 25.625539441960104 16-17 21.676576670024264 28.51561049078247 27.60900751483749 22.19880532435577 18-19 21.69402728210947 27.973767953770256 29.03049984551015 21.301704918610127 20-21 22.570124622046063 27.307213825538767 28.63073620663741 21.49192534577777 22-23 22.268181438086682 27.21704763493283 28.57675285171966 21.938018075260832 24-25 21.956984603620963 27.35194129962763 28.72355095635415 21.967523140397258 26-27 21.98073227065148 27.460806917061408 28.583941961631425 21.974518850655684 28-29 21.956376806188324 27.539137431276817 28.61080007220396 21.89368569033089 30-31 22.225324099305087 27.465870700633673 28.409136805437495 21.899668394623745 32-33 22.02498846111255 27.683335162816764 28.40388879701124 21.88778757905945 34-35 22.12984111047372 27.618186525155686 28.423318570698918 21.828653793671677 36-37 22.129432541253447 27.511096655764383 28.436987460103136 21.922483342879033 38-39 22.02430725397044 27.690294464661232 28.450182359709064 21.835215921659266 40-41 22.18407603591783 27.519457198430853 28.372381916135396 21.92408484951592 42-43 22.03700156484995 27.67061574217798 28.166857546387646 22.125525146584426 44-45 22.142349335037167 27.780443244690005 28.02216775009369 22.055039670179134 46-47 22.263168427126065 27.676528712958167 27.81584518549771 22.244457674418058 48-49 22.17200758402214 27.783523794145655 27.806432605058166 22.238036016774043 50-51 22.143017712421663 27.87676415648943 27.669020621147673 22.311197509941234 52-53 22.298575446928794 27.78131770006076 27.587890180188673 22.332216672821772 54-55 22.27379284915345 27.684708925371726 27.6441088130806 22.397389412394226 56-57 22.267247568159164 27.80415677129236 27.671591077856288 22.25700458269219 58-59 22.272779130040988 27.854850236113933 27.592800100376785 22.279570533468295 60-61 22.328044689925715 27.825046283527232 27.59504417136107 22.251864855185985 62-63 22.351018878642034 27.81168000572414 27.572789938971116 22.26451117666271 64-65 22.26779140115446 27.82934560643361 27.571712966556976 22.331150025854956 66-67 22.342204860034194 27.871624696789947 27.39761991125043 22.388550531925418 68-69 22.27767248355614 27.80811659979251 27.486617773523754 22.4275931431276 70-71 22.312505901410063 27.512181733013925 27.619740226846663 22.55557213872935 72-73 22.366954976612924 27.613111569852013 27.552348724380916 22.467584729154147 74-75 22.10746060792495 27.802452334795074 27.55926609763579 22.53082095964419 76-77 22.27563000774554 27.72845744473446 27.503297973582686 22.49261457393731 78-79 22.266290663556553 27.766626064288197 27.429314346993227 22.537768925162023 80-81 22.32232330398671 27.667733405842178 27.43026015893629 22.579683131234823 82-83 22.306079049133775 27.584843878250126 27.62614972447166 22.482927348144443 84-85 22.41133976685165 27.583463584207657 27.491123865450106 22.514072783490587 86-87 22.209834577493247 27.6451420435264 27.613961324734554 22.531062054245805 88-89 22.33920953707744 27.587825985915405 27.53742603239432 22.535538444612836 90-91 22.34003943517002 27.566159317462084 27.661318469708217 22.43248277765968 92-93 22.383738670718962 27.512844285670624 27.556371242178756 22.54704580143166 94-95 22.180554371809805 27.512871262125504 27.730301681550294 22.576272684514397 96-97 22.18855211755347 27.540990360657432 27.732889411332412 22.53756811045669 98-99 22.316531690929935 28.26252719094115 27.77602221180626 21.644918906322655 100-101 26.247101655504494 35.410028062424594 28.603908041537196 9.738962240533715 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3379.0 1 3179.5 2 4659.5 3 6808.0 4 8932.5 5 13679.0 6 17815.5 7 21070.0 8 22990.0 9 22421.5 10 20504.5 11 18323.5 12 19589.5 13 25433.0 14 38759.0 15 56106.0 16 68571.5 17 73532.5 18 73495.0 19 71276.5 20 68059.0 21 66228.0 22 68538.0 23 78018.5 24 95259.5 25 119990.0 26 151694.0 27 184005.5 28 215768.0 29 248688.0 30 276738.0 31 303021.5 32 332262.5 33 364244.0 34 395139.5 35 424789.5 36 458015.5 37 486699.5 38 505564.5 39 519743.0 40 536684.0 41 553208.0 42 566980.0 43 583966.0 44 600851.5 45 612748.0 46 617500.0 47 618464.0 48 617893.5 49 612530.0 50 603568.5 51 591573.5 52 571697.5 53 547031.0 54 520026.0 55 487009.5 56 451603.0 57 412186.5 58 370666.0 59 328290.0 60 279700.0 61 229660.5 62 182607.0 63 142000.0 64 107496.0 65 78957.5 66 58525.0 67 44650.5 68 33803.5 69 23728.0 70 16047.5 71 10681.0 72 6947.5 73 4518.0 74 3058.5 75 2119.0 76 1479.0 77 1000.5 78 666.0 79 462.5 80 328.0 81 232.5 82 172.5 83 120.5 84 79.0 85 50.5 86 38.0 87 31.0 88 23.0 89 17.5 90 12.5 91 9.5 92 9.0 93 6.5 94 2.5 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018296660680586251 3 4.814910705417435E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0023800514269956027 22-23 3.921328113930955E-4 24-25 0.0010837750921028199 26-27 0.011392840491215226 28-29 2.8242264486809295E-4 30-31 0.002535013188276775 32-33 0.002922246356019314 34-35 0.0016835131956020525 36-37 0.06259287093309522 38-39 0.02853168524289965 40-41 0.025889285582995636 42-43 0.0033742643565256333 44-45 0.0015240222925272252 46-47 0.003325347233309265 48-49 0.002746302492567214 50-51 7.422855711252571E-4 52-53 8.842845446233803E-4 54-55 0.0014415857875367739 56-57 0.011119719030841186 58-59 0.008273126541008166 60-61 0.004523862110438974 62-63 0.002736919463951989 64-65 0.0012458578823187315 66-67 4.957400102763988E-4 68-69 0.001673410595883765 70-71 8.579961833755775E-5 72-73 6.576210814330443E-4 74-75 3.136679991224365E-4 76-77 0.005194201048744597 78-79 0.0014878166922477106 80-81 5.874810109484257E-4 82-83 4.234066537226548E-4 84-85 0.002552842403572832 86-87 0.0029683474087735997 88-89 0.03980767564543767 90-91 3.5773989407472895E-4 92-93 4.4766854991048946E-4 94-95 1.6835466772786224E-4 96-97 0.018314969801112295 98-99 1.9216675190769303E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 444.0 20-21 1305.0 22-23 2562.0 24-25 5465.0 26-27 8048.0 28-29 15430.0 30-31 35843.0 32-33 49212.0 34-35 70274.0 36-37 117305.0 38-39 136131.0 40-41 133061.0 42-43 143656.0 44-45 167513.0 46-47 173312.0 48-49 168781.0 50-51 155966.0 52-53 144659.0 54-55 153312.0 56-57 164403.0 58-59 169752.0 60-61 169746.0 62-63 153707.0 64-65 154606.0 66-67 168145.0 68-69 175632.0 70-71 177597.0 72-73 164705.0 74-75 160885.0 76-77 163712.0 78-79 178192.0 80-81 183184.0 82-83 171303.0 84-85 166091.0 86-87 172325.0 88-89 188462.0 90-91 205050.0 92-93 208951.0 94-95 243266.0 96-97 305930.0 98-99 1107588.0 100-101 7902661.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.54572792200716 #Duplication Level Percentage of deduplicated Percentage of total 1 89.74406834337991 75.87477584773413 2 6.984908545794023 11.810883549456083 3 1.755504336384615 4.452611759696322 4 0.7003788338420601 2.368561533133739 5 0.30986527658170776 1.3098892683177281 6 0.16670966306364818 0.8456753889209211 7 0.10180104565889242 0.6024790455916782 8 0.06846509485663793 0.4630745025522978 9 0.0410849268689317 0.31261995438806345 >10 0.1229815489541328 1.5932856610621975 >50 0.0031346438297212035 0.17437182407989354 >100 0.001027881572592443 0.13109237805251384 >500 5.588874992112173E-5 0.04015102200589876 >1k 1.3970463203316513E-5 0.020528265008598345 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.87844386488205E-6 2 0.0 2.75137754595282E-5 0.0 0.0 6.87844386488205E-6 3 0.0 2.75137754595282E-5 0.0 0.0 6.87844386488205E-6 4 0.0 1.8571798435181535E-4 0.0 1.37568877297641E-5 1.37568877297641E-5 5 0.0 1.8571798435181535E-4 0.0 1.37568877297641E-5 1.37568877297641E-5 6 3.439221932441025E-5 1.8571798435181535E-4 0.0 1.37568877297641E-5 2.063533159464615E-5 7 3.439221932441025E-5 1.9259642821669738E-4 0.0 2.75137754595282E-5 2.063533159464615E-5 8 3.439221932441025E-5 2.201102036762256E-4 0.0 2.75137754595282E-5 2.75137754595282E-5 9 3.439221932441025E-5 4.539772950822153E-4 0.0 4.8149107054174346E-5 6.190599478393845E-5 10-11 4.12706631892923E-5 4.539772950822153E-4 0.0 6.190599478393845E-5 6.190599478393845E-5 12-13 4.8149107054174346E-5 4.539772950822153E-4 0.0 7.222366058126151E-5 6.190599478393845E-5 14-15 4.8149107054174346E-5 6.156207259069435E-4 0.0 7.910210444614358E-5 8.254132637858461E-5 16-17 5.158832898661537E-5 6.259383917042666E-4 0.0 1.100551018381128E-4 1.238119895678769E-4 18-19 5.50275509190564E-5 7.050404961504101E-4 0.0 1.2725121150031793E-4 1.3069043343275896E-4 20-21 6.190599478393845E-5 7.841426005965537E-4 0.0 1.6852187468961022E-4 1.37568877297641E-4 22-23 6.190599478393845E-5 8.529270392453742E-4 0.0 2.0291409401402048E-4 1.6164343082472816E-4 24-25 6.190599478393845E-5 9.251506998266357E-4 0.0 2.7857697652772305E-4 2.0635331594646148E-4 26-27 6.534521671637948E-5 9.629821410834869E-4 0.0 3.920713002982768E-4 2.1323175981134354E-4 28-29 6.87844386488205E-5 9.767390288132512E-4 0.0 8.3917015151561E-4 2.1323175981134354E-4 30-31 7.222366058126151E-5 0.001090233352583805 0.0 0.002042897827869969 2.1323175981134354E-4 32-33 7.566288251370255E-5 0.00110742946224601 0.0 0.004553529838551917 2.441847572033128E-4 34-35 7.910210444614358E-5 0.0013447357755844405 0.0 0.007906771222681916 2.5450242300063586E-4 36-37 8.25413263785846E-5 0.0015751636450579893 0.0 0.013203172998641094 2.5450242300063586E-4 38-39 8.25413263785846E-5 0.0016129950863148406 0.0 0.02107211278006616 2.613808668655179E-4 40-41 8.25413263785846E-5 0.0017780777390720098 0.0 0.029725195162087777 2.613808668655179E-4 42-43 8.25413263785846E-5 0.0018606190654505946 0.0 0.03722269897480922 2.71698532662841E-4 44-45 8.941977024346664E-5 0.0021219999323161126 0.0 0.04588265980069571 2.8201619846016405E-4 46-47 9.629821410834869E-5 0.002311157138600369 0.0 0.055223586569205535 2.923338642574871E-4 48-49 9.629821410834869E-5 0.0023283532482625737 0.0 0.06520764783908184 3.0952997391969225E-4 50-51 9.973743604078972E-5 0.0025690987835334453 0.0 0.0752054659966879 3.0952997391969225E-4 52-53 1.0317665797323075E-4 0.0025794164493307685 0.0 0.0843262825615215 3.9894974416315894E-4 54-55 1.0317665797323075E-4 0.002593173337060533 0.0 0.09343334223862532 4.986871802039486E-4 56-57 1.0317665797323075E-4 0.002648200887979589 0.0 0.10234780548751246 5.158832898661538E-4 58-59 1.0317665797323075E-4 0.0026688362195742355 0.0 0.11086675821416889 5.227617337310358E-4 60-61 1.100551018381128E-4 0.0027135461046959687 0.0 0.11959894270063665 5.227617337310358E-4 62-63 1.37568877297641E-4 0.00278576976527723 0.0 0.12815916609048236 5.365186214607999E-4 64-65 1.37568877297641E-4 0.0031090566269266866 0.0 0.1365646244933682 5.365186214607999E-4 66-67 1.478865430949641E-4 0.0031331311804537734 0.0 0.14486346701634842 5.468362872581229E-4 68-69 1.513257650274051E-4 0.0032019156191025943 0.0 0.15363348294407303 5.57153953055446E-4 70-71 1.5476498695984612E-4 0.003250064726156769 0.0 0.16228312610416218 5.640323969203281E-4 72-73 1.7196109662205125E-4 0.0032672608358189736 0.0 0.1700454500056816 5.984246162447384E-4 74-75 1.7196109662205125E-4 0.003349802162197558 0.0 0.17643896357808947 5.984246162447384E-4 76-77 1.8915720628425638E-4 0.003470174929832994 0.0 0.18216182887367133 5.984246162447384E-4 78-79 2.063533159464615E-4 0.0035148848149547276 0.0 0.18772992918229336 5.984246162447384E-4 80-81 2.063533159464615E-4 0.0035148848149547276 0.0 0.190955919354923 6.224991697718255E-4 82-83 2.063533159464615E-4 0.0035148848149547276 0.0 0.19313294683815818 6.740874987584409E-4 84-85 2.063533159464615E-4 0.0035458378123466965 0.0 0.19506922878612248 6.740874987584409E-4 86-87 2.0979253787890254E-4 0.003618061472927958 0.0 0.19533060965298799 6.775267206908819E-4 88-89 2.1323175981134354E-4 0.00375906957215804 0.0 0.19536156265038 6.844051645557639E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14950 0.0 46.23229 1 GTATCAA 26370 0.0 34.330402 1 TCAACGC 33090 0.0 26.5892 4 ATCAACG 33735 0.0 26.056778 3 CAACGCA 34025 0.0 25.846478 5 AACGCAG 34805 0.0 25.314386 6 TATCAAC 35165 0.0 25.289215 2 TACATGG 45560 0.0 23.093533 2 GTACATG 46580 0.0 22.931274 1 ACATGGG 46100 0.0 22.190891 3 ACGCAGA 42150 0.0 20.835014 7 CGCAGAG 42625 0.0 20.602839 8 CATGGGG 32235 0.0 20.028658 4 AGAGTAC 45300 0.0 17.299103 10-11 GCAGAGT 51720 0.0 16.829126 9 GAGTACT 27830 0.0 16.19792 12-13 ATGGGGG 19325 0.0 15.982702 5 GAGTACA 32325 0.0 15.785871 1 CAGAGTA 49670 0.0 15.661502 10-11 GTGGTAT 7380 0.0 15.284916 1 >>END_MODULE