##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139295_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 39083605 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59703202915903 31.0 31.0 34.0 30.0 34.0 2 31.56595708098063 31.0 31.0 34.0 30.0 34.0 3 31.73147047208158 31.0 31.0 34.0 30.0 34.0 4 35.49293618129648 37.0 35.0 37.0 33.0 37.0 5 35.41214335269226 37.0 35.0 37.0 33.0 37.0 6 35.48296192226894 37.0 35.0 37.0 33.0 37.0 7 35.38292665172519 37.0 35.0 37.0 33.0 37.0 8 35.38538781159005 37.0 35.0 37.0 33.0 37.0 9 36.91313593001465 39.0 37.0 39.0 33.0 39.0 10-11 36.84181428504356 39.0 37.0 39.0 32.5 39.0 12-13 36.803653283774615 39.0 37.0 39.0 32.0 39.0 14-15 37.96382366723847 40.0 37.0 41.0 33.0 41.0 16-17 37.97589541701693 40.0 37.0 41.0 33.0 41.0 18-19 38.03568214856332 40.0 37.0 41.0 33.0 41.0 20-21 38.06080594715855 40.0 37.0 41.0 33.0 41.0 22-23 38.02413507663013 40.0 37.0 41.0 33.0 41.0 24-25 37.974550021552815 40.0 37.0 41.0 33.0 41.0 26-27 37.83907864106361 40.0 37.0 41.0 32.0 41.0 28-29 37.75697543476437 40.0 37.0 41.0 32.0 41.0 30-31 37.66744644791076 40.0 37.0 41.0 32.0 41.0 32-33 37.56260529917314 40.0 36.0 41.0 32.0 41.0 34-35 37.480001887323205 39.5 36.0 41.0 31.5 41.0 36-37 37.41804642076002 39.0 36.0 41.0 31.0 41.0 38-39 37.3562323862851 39.0 36.0 41.0 31.0 41.0 40-41 37.30392089285628 39.0 36.0 41.0 31.0 41.0 42-43 37.238451675973465 39.0 36.0 41.0 31.0 41.0 44-45 37.17844979678395 39.0 36.0 41.0 31.0 41.0 46-47 37.132284278480284 39.0 36.0 41.0 31.0 41.0 48-49 37.04725871619232 39.0 35.5 41.0 31.0 41.0 50-51 36.961706349639385 39.0 35.0 40.5 30.0 41.0 52-53 36.86383759404595 39.0 35.0 40.0 30.0 41.0 54-55 36.724027243488806 39.0 35.0 40.0 30.0 41.0 56-57 36.55684019749826 38.0 35.0 40.0 30.0 41.0 58-59 36.39282733773567 38.0 35.0 40.0 29.5 41.0 60-61 36.22320163455633 38.0 34.0 40.0 29.0 41.0 62-63 36.02476389759886 38.0 34.0 40.0 29.0 41.0 64-65 35.79638999761828 37.5 34.0 40.0 29.0 41.0 66-67 35.53003242644263 37.0 34.0 40.0 28.5 41.0 68-69 35.261283231437154 36.5 34.0 39.0 28.0 41.0 70-71 34.94937507866462 36.0 33.0 39.0 28.0 40.5 72-73 34.66131325679684 36.0 33.0 39.0 28.0 40.0 74-75 34.36749234005217 35.0 33.0 38.0 28.0 40.0 76-77 34.05265683957376 35.0 32.5 37.0 28.0 39.5 78-79 34.04661758828992 35.0 33.0 37.0 28.0 39.0 80-81 33.84558887051874 35.0 33.0 36.5 28.0 39.0 82-83 33.57862145330745 35.0 33.0 36.0 28.0 38.5 84-85 33.35144011002514 35.0 32.0 36.0 28.0 37.0 86-87 33.158513528253906 35.0 32.0 35.5 28.0 37.0 88-89 33.126400545808316 35.0 32.5 35.0 28.5 36.5 90-91 33.234428170080065 35.0 33.0 35.0 29.0 36.0 92-93 33.21686645403607 35.0 33.0 35.0 29.0 36.0 94-95 33.20414584878655 35.0 33.0 35.0 29.0 36.0 96-97 33.25091181440409 35.0 33.0 35.0 29.0 35.5 98-99 33.338124257155684 35.0 33.0 35.0 29.0 35.0 100 32.93784428302508 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 53.0 20 349.0 21 2515.0 22 11790.0 23 39123.0 24 100270.0 25 204859.0 26 351967.0 27 532353.0 28 731839.0 29 936969.0 30 1149614.0 31 1388309.0 32 1680395.0 33 2057123.0 34 2593189.0 35 3356997.0 36 4687382.0 37 7103352.0 38 8319738.0 39 3731379.0 40 104036.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.59621432055718 21.28663156840317 14.188220354800945 24.92893375623871 2 14.079612154508265 22.56240436367116 40.7101264072237 22.64785707459688 3 17.21822487971619 27.615709963295348 31.232060092716623 23.934005064271837 4 12.10091546058763 19.53088513713103 39.651104344136115 28.717095058145226 5 12.152382053804914 38.95502218897157 36.3695314186089 12.523064338614617 6 27.941900446491562 40.25309845394251 19.3550032040289 12.449997895537015 7 24.715143344632615 33.51365873235081 24.64073362730997 17.130464295706602 8 23.640749106946508 37.39674474757383 21.832272125357935 17.130234020121737 9 25.258880290085827 16.419299089733403 21.542598232686057 36.779222387494706 10-11 23.168221048186318 27.235656741490455 30.105266645694527 19.4908555646287 12-13 24.355582091263077 24.95347345773247 29.942877582556676 20.74806686844778 14-15 21.55385487085953 26.117676452824657 27.4919304398865 24.836538236429316 16-17 20.961436387457095 29.19876377831574 28.08539667720007 21.754403157027095 18-19 21.04133306024355 28.44721591061009 29.773234838495576 20.738216190650785 20-21 21.964656650790086 27.587141657425086 29.580747439523737 20.867454252261094 22-23 21.590907113207845 27.5344151892742 29.494912877746287 21.379764819771665 24-25 21.36729031673435 27.690443703923716 29.52002523620766 21.42224074313427 26-27 21.430139773638327 27.78161383770328 29.382982058829477 21.405264329828917 28-29 21.41009287719232 27.81056069879731 29.401386615937895 21.37795980807248 30-31 21.68846861848847 27.668322762610977 29.3025742893446 21.340634329555954 32-33 21.50905154764448 27.83866009262514 29.238839011923627 21.413449347806754 34-35 21.60351608182934 27.849736069423052 29.221392751441382 21.325355097306225 36-37 21.628482214894486 27.762595148564472 29.17706553694877 21.431857099592268 38-39 21.52907239260023 27.847491758852343 29.205850589536585 21.417585259010842 40-41 21.754272245315303 27.7686079088253 29.031380077968684 21.445739767890718 42-43 21.63563652673262 27.894513489492905 28.826306056300012 21.643543927474465 44-45 21.737685127398308 28.00256907783123 28.62222695040616 21.6375188443643 46-47 21.839172624061867 27.981243989778054 28.326529000062976 21.8530543860971 48-49 21.820535797589184 28.083840214136064 28.274662452042122 21.820961536232637 50-51 21.793061686793862 28.216670036796625 28.118636039704565 21.871632236704947 52-53 21.934259005108398 28.120231549388343 28.039157134588628 21.906352310914635 54-55 21.904977581286918 28.006455727131268 28.175196522777014 21.913370168804807 56-57 21.899236055303113 28.067597720911667 28.143847971677825 21.889318252107394 58-59 21.886542067060923 28.118617799716972 28.108638916651884 21.88620121657022 60-61 21.91787278500301 28.113122395827332 28.119597084282677 21.84940773488698 62-63 21.88542366357779 28.180170620779077 28.070336924749867 21.864068790893267 64-65 21.83789943119323 28.178376789786018 28.035578227406532 21.94814555161421 66-67 21.917722390476904 28.23255959961331 27.859473689843007 21.99024432006678 68-69 21.873010756458044 28.18809647454343 27.93127504926393 22.007617719734593 70-71 21.888432860926958 27.94945013451987 28.03418010437343 22.127936900179744 72-73 21.957424371410607 27.980671753060793 27.9537080898571 22.1081957856715 74-75 21.830084348085034 28.173115183154124 27.925188407082974 22.07161206167787 76-77 21.967202828598055 28.110748399355913 27.84998973241076 22.072059039635274 78-79 21.91408591888631 28.13147261063611 27.81916329345545 22.13527817702213 80-81 21.907494912715723 28.143804005864503 27.826930986093434 22.121770095326347 82-83 21.978672340604124 28.08463943337008 27.937061815043723 21.999626410982074 84-85 22.035283799487075 28.14497675935786 27.85161877015306 21.96812067100201 86-87 21.853986396805947 28.206522968654557 27.950491280614344 21.988999353925152 88-89 21.933425556541287 28.172366157875707 27.89073023167303 22.003478053909976 90-91 21.981109910639038 28.160076545847843 27.963162230827987 21.895651312685132 92-93 22.002489092789954 28.124959058843025 27.92846417734392 21.944087671023105 94-95 21.772730002665234 28.190398796078377 28.02906910282773 22.007802098428655 96-97 21.791368110942013 28.35378686865848 28.107679598684264 21.747165421715238 98-99 22.825381247086302 30.26089921532759 28.344820981802897 18.568898555783214 100 21.876345389778816 31.255101084634408 22.155278580594327 24.713274944992452 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5695.0 1 6075.0 2 11515.5 3 16796.0 4 21049.5 5 35779.0 6 48917.0 7 56932.5 8 60851.5 9 56217.5 10 46378.5 11 35456.0 12 35429.0 13 50438.5 14 92731.0 15 155160.0 16 205696.0 17 231305.0 18 234876.5 19 222987.0 20 201855.5 21 180671.5 22 170802.0 23 182751.5 24 220138.0 25 280306.0 26 361111.5 27 451251.5 28 539155.5 29 633732.0 30 725915.0 31 816545.5 32 915057.5 33 1006471.0 34 1095759.5 35 1180473.5 36 1268812.5 37 1354477.0 38 1410161.0 39 1449755.5 40 1494531.5 41 1531156.0 42 1552561.5 43 1573170.0 44 1587929.0 45 1599572.0 46 1598615.5 47 1587575.5 48 1568905.0 49 1526074.5 50 1475015.0 51 1414220.0 52 1335229.5 53 1246153.5 54 1152878.0 55 1050853.0 56 949148.0 57 850716.0 58 750482.5 59 651391.5 60 543100.5 61 436623.5 62 342550.0 63 262472.0 64 196653.0 65 144548.0 66 107881.0 67 82169.0 68 61704.0 69 44360.0 70 31580.0 71 22647.0 72 15960.0 73 10906.5 74 7411.0 75 5063.5 76 3475.5 77 2433.5 78 1752.0 79 1324.0 80 1013.5 81 757.0 82 584.5 83 425.0 84 308.0 85 228.0 86 160.0 87 121.5 88 82.5 89 49.5 90 34.5 91 26.5 92 20.5 93 10.0 94 4.5 95 4.0 96 3.0 97 2.5 98 1.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.700136587241061E-4 24-25 1.4977031378288834E-4 26-27 1.536783705595067E-4 28-29 4.446710031102494E-4 30-31 4.182410147974184E-4 32-33 4.922756424839791E-4 34-35 9.160459124272735E-4 36-37 4.7046082464958296E-4 38-39 0.0017989636801044363 40-41 7.697421911611678E-5 42-43 1.4434331664199708E-4 44-45 9.779401933802727E-5 46-47 3.731296841267994E-5 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 1.3855710812028205E-6 60-61 0.0 62-63 2.5306972878039148E-5 64-65 0.0 66-67 0.0 68-69 3.9850350281701695E-4 70-71 0.0 72-73 3.658954098801362E-4 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 1.2499028200557405E-5 88-89 0.0 90-91 0.0 92-93 4.194300195425239E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1772.0 20-21 6977.0 22-23 11902.0 24-25 15488.0 26-27 21914.0 28-29 36688.0 30-31 68079.0 32-33 86262.0 34-35 114739.0 36-37 153823.0 38-39 189560.0 40-41 213837.0 42-43 253017.0 44-45 310575.0 46-47 301565.0 48-49 264847.0 50-51 224888.0 52-53 199739.0 54-55 213815.0 56-57 244966.0 58-59 256544.0 60-61 265512.0 62-63 254427.0 64-65 261583.0 66-67 283905.0 68-69 293037.0 70-71 300204.0 72-73 284378.0 74-75 281617.0 76-77 292433.0 78-79 316807.0 80-81 334118.0 82-83 322862.0 84-85 317304.0 86-87 334278.0 88-89 360226.0 90-91 407645.0 92-93 443242.0 94-95 550497.0 96-97 1391863.0 98-99 2547063.0 100-101 2.6049607E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.10978389592249 #Duplication Level Percentage of deduplicated Percentage of total 1 85.65269001126869 66.04660416873367 2 8.908687245648931 13.738938966167 3 2.619084883308315 6.058712080709445 4 1.1283180538721893 3.480174451998093 5 0.5833631888005476 2.2491504710623227 6 0.3499673109812747 1.6191542232241916 7 0.20954194434615817 1.131041383196457 8 0.13221522368438038 0.8156069860842898 9 0.09337039190483529 0.6479793667853496 >10 0.3156887293802498 3.6363118694454992 >50 0.005171083319358218 0.26861468920726456 >100 0.0018207443246556067 0.23790923599078723 >500 5.721064163288218E-5 0.028842477042814604 >1k 2.397851870191325E-5 0.04095963035286619 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 2.55861760960894E-6 0.0 2.55861760960894E-6 2.55861760960894E-6 2 0.0 2.3027558486480456E-5 0.0 1.023447043843576E-5 5.11723521921788E-6 3 0.0 2.8144793705698337E-5 0.0 2.5586176096089396E-5 5.11723521921788E-6 4 0.0 8.443438111709501E-5 0.0 2.8144793705698337E-5 5.11723521921788E-6 5 5.11723521921788E-6 8.955161633631289E-5 0.0 3.0703411315307274E-5 5.11723521921788E-6 6 5.11723521921788E-6 8.955161633631289E-5 0.0 3.0703411315307274E-5 1.023447043843576E-5 7 5.11723521921788E-6 8.955161633631289E-5 0.0 3.5820646534525156E-5 1.023447043843576E-5 8 5.11723521921788E-6 9.466885155553077E-5 0.0 3.8379264144134096E-5 1.2793088048044698E-5 9 5.11723521921788E-6 1.7910323267262578E-4 0.0 5.884820502100561E-5 1.5351705657653637E-5 10-11 5.11723521921788E-6 1.7910323267262578E-4 0.0 8.699299872670394E-5 1.5351705657653637E-5 12-13 5.11723521921788E-6 1.816618502822347E-4 0.0 1.0362401318916205E-4 1.5351705657653637E-5 14-15 6.396544024022349E-6 2.4818590813206715E-4 0.0 1.0746193960357547E-4 2.046894087687152E-5 16-17 1.151377924324023E-5 2.5969968737530734E-4 0.0 1.2793088048044696E-4 3.5820646534525156E-5 18-19 1.2793088048044698E-5 2.96799642714637E-4 0.0 1.5095843896692742E-4 3.709995533932962E-5 20-21 1.6631014462458107E-5 3.2494443642033533E-4 0.0 1.6631014462458105E-4 3.8379264144134096E-5 22-23 1.7910323267262578E-5 3.81234023831732E-4 0.0 1.957342471350839E-4 4.093788175374304E-5 24-25 2.046894087687152E-5 4.2217190558547504E-4 0.0 2.4051005530324033E-4 4.605511697296091E-5 26-27 2.046894087687152E-5 4.413615376575421E-4 0.0 2.955203339098325E-4 4.605511697296091E-5 28-29 2.046894087687152E-5 4.4775808168156443E-4 0.0 6.12788917501341E-4 4.989304338737432E-5 30-31 2.046894087687152E-5 4.963718162641342E-4 0.0 0.0018754667078433528 5.2451660996983266E-5 32-33 2.046894087687152E-5 5.040476690929611E-4 0.0 0.004723208107338103 5.373096980178773E-5 34-35 2.046894087687152E-5 5.897613590148607E-4 0.0 0.008353886495373188 5.6289587411396674E-5 36-37 2.046894087687152E-5 6.844302105703914E-4 0.0 0.014836144209317437 5.6289587411396674E-5 38-39 2.046894087687152E-5 7.087370778616763E-4 0.0 0.03765389605180996 6.140682263061455E-5 40-41 2.046894087687152E-5 7.547921948346371E-4 0.0 0.06380040940440371 6.39654402402235E-5 42-43 2.046894087687152E-5 7.803783709307266E-4 0.0 0.07773975814155322 6.524474904502796E-5 44-45 2.046894087687152E-5 8.712092960718439E-4 0.0 0.09527780254661769 6.652405784983243E-5 46-47 2.046894087687152E-5 9.569229859937434E-4 0.0 0.1122491131511538 6.908267545944136E-5 48-49 2.3027558486480456E-5 9.709953828465926E-4 0.0 0.12803194587602654 7.419991067865924E-5 50-51 2.3027558486480456E-5 0.0010733400872309502 0.0 0.14430603318194418 7.547921948346373E-5 52-53 2.3027558486480456E-5 0.0010848538664741903 0.0 0.19918838090805596 9.594816036033524E-5 54-55 2.5586176096089396E-5 0.0010989262633270395 0.0 0.26487321218193666 1.1641710123720675E-4 56-57 2.5586176096089396E-5 0.0011283503658375423 0.0 0.3246527540128399 1.2025502765162016E-4 58-59 2.5586176096089396E-5 0.001148819306714414 0.0 0.3461106005958253 1.2793088048044696E-4 60-61 2.5586176096089396E-5 0.0011884778796633524 0.0 0.3600141286864402 1.356067333092738E-4 62-63 2.5586176096089396E-5 0.0012127847469546372 0.0 0.36996715118781903 1.4328258613810062E-4 64-65 2.5586176096089396E-5 0.0013458328626543023 0.0 0.3745189319153133 1.4456189494290508E-4 66-67 2.8144793705698337E-5 0.0013522294066783246 0.0 0.3792024814497025 1.4584120374770956E-4 68-69 2.8144793705698337E-5 0.0013867707444080452 0.0 0.38391673439540697 1.4584120374770956E-4 70-71 2.8144793705698337E-5 0.0014059603764801122 0.0 0.3878889882343248 1.5479636538134087E-4 72-73 2.9424102510502807E-5 0.0014097983028945257 0.0 0.39105911545263033 1.9701355593988834E-4 74-75 3.198272012011174E-5 0.0014609706550867045 0.0 0.39343990913837146 1.9701355593988834E-4 76-77 3.3262028924916215E-5 0.0015441257273989951 0.0 0.39581814420650296 1.9701355593988834E-4 78-79 3.3262028924916215E-5 0.0015837843003479336 0.0 0.39727783555278484 1.9701355593988834E-4 80-81 3.3262028924916215E-5 0.0015863429179575426 0.0 0.39779339700112104 2.0085148235430176E-4 82-83 3.3262028924916215E-5 0.0015978566972007827 0.0 0.39812857590797984 2.0852733518312856E-4 84-85 3.3262028924916215E-5 0.0016119290940536319 0.0 0.3982833722733612 2.0980664398793304E-4 86-87 3.3262028924916215E-5 0.0016541462846121793 0.0 0.39835117564001576 2.0980664398793304E-4 88 3.3262028924916215E-5 0.0017526530625821236 0.0 0.39836141011045423 2.12365261597542E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 49390 0.0 48.37135 1 GTATCAA 88615 0.0 37.00431 1 ATCAACG 110520 0.0 29.139418 3 TCAACGC 110525 0.0 29.102985 4 CAACGCA 112745 0.0 28.510809 5 TATCAAC 116520 0.0 27.816578 2 AACGCAG 116760 0.0 27.607975 6 ACGCAGA 134955 0.0 23.8123 7 CGCAGAG 136925 0.0 23.46655 8 GCAGAGT 161725 0.0 19.73204 9 GTACATG 113570 0.0 19.532364 1 TACATGG 112360 0.0 19.190035 2 AGAGTAC 144965 0.0 18.941889 10-11 ACATGGG 112020 0.0 18.697775 3 GAGTACT 96090 0.0 18.258856 12-13 CAGAGTA 157140 0.0 17.56074 10-11 GTGGTAT 23330 0.0 16.913122 1 AGTACTT 105355 0.0 16.835306 12-13 CATGGGG 73335 0.0 15.982902 4 GTACTTT 109500 0.0 15.982647 14-15 >>END_MODULE