##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139294_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25956927 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.572949871916656 31.0 31.0 34.0 30.0 34.0 2 31.541025792459948 31.0 31.0 34.0 30.0 34.0 3 31.708513646472866 31.0 31.0 34.0 30.0 34.0 4 35.47386221797365 37.0 35.0 37.0 33.0 37.0 5 35.38890420272014 37.0 35.0 37.0 33.0 37.0 6 35.45948312756745 37.0 35.0 37.0 33.0 37.0 7 35.356102014695345 37.0 35.0 37.0 32.0 37.0 8 35.3575013328812 37.0 35.0 37.0 32.0 37.0 9 36.881599928990056 39.0 37.0 39.0 33.0 39.0 10-11 36.80757462160293 39.0 37.0 39.0 32.0 39.0 12-13 36.76732266881977 39.0 37.0 39.0 32.0 39.0 14-15 37.91939748877053 40.0 37.0 41.0 33.0 41.0 16-17 37.93150315906039 40.0 37.0 41.0 33.0 41.0 18-19 37.991724290013224 40.0 37.0 41.0 33.0 41.0 20-21 38.013029668388064 40.0 37.0 41.0 33.0 41.0 22-23 37.97757104567098 40.0 37.0 41.0 33.0 41.0 24-25 37.928054514321104 40.0 37.0 41.0 32.0 41.0 26-27 37.78955086505498 40.0 37.0 41.0 32.0 41.0 28-29 37.70807888277735 40.0 37.0 41.0 32.0 41.0 30-31 37.61752204965355 40.0 36.5 41.0 32.0 41.0 32-33 37.51245565552837 39.0 36.0 41.0 32.0 41.0 34-35 37.42708728248223 39.0 36.0 41.0 31.0 41.0 36-37 37.365627260629225 39.0 36.0 41.0 31.0 41.0 38-39 37.30044907470195 39.0 36.0 41.0 31.0 41.0 40-41 37.24671061615098 39.0 36.0 41.0 31.0 41.0 42-43 37.17948068777973 39.0 36.0 41.0 31.0 41.0 44-45 37.115720776603894 39.0 36.0 41.0 31.0 41.0 46-47 37.06888409927035 39.0 36.0 41.0 31.0 41.0 48-49 36.98048690451099 39.0 35.0 41.0 30.0 41.0 50-51 36.89349600664407 39.0 35.0 40.0 30.0 41.0 52-53 36.79499335857074 39.0 35.0 40.0 30.0 41.0 54-55 36.649954854471986 39.0 35.0 40.0 30.0 41.0 56-57 36.47921018574041 38.0 35.0 40.0 30.0 41.0 58-59 36.31309477534004 38.0 34.5 40.0 29.0 41.0 60-61 36.14122285770276 38.0 34.0 40.0 29.0 41.0 62-63 35.936139765806494 38.0 34.0 40.0 29.0 41.0 64-65 35.70680849211054 37.0 34.0 40.0 29.0 41.0 66-67 35.44136399202729 37.0 34.0 40.0 28.0 41.0 68-69 35.170389322925544 36.0 33.5 39.0 28.0 41.0 70-71 34.85862746118732 36.0 33.0 39.0 28.0 40.5 72-73 34.56695429939923 35.5 33.0 39.0 28.0 40.0 74-75 34.27552724062871 35.0 33.0 38.0 28.0 40.0 76-77 33.96310013887313 35.0 32.0 37.0 27.5 39.0 78-79 33.96152763970012 35.0 33.0 37.0 28.0 39.0 80-81 33.757219087038244 35.0 33.0 36.5 28.0 39.0 82-83 33.49295660387021 35.0 32.0 36.0 28.0 38.0 84-85 33.2766578320211 35.0 32.0 36.0 28.0 37.0 86-87 33.08779431403066 35.0 32.0 35.0 27.5 37.0 88-89 33.05807580406461 35.0 32.0 35.0 28.0 36.5 90-91 33.172488878558035 35.0 33.0 35.0 29.0 36.0 92-93 33.16447451607565 35.0 33.0 35.0 29.0 36.0 94-95 33.15234626963872 35.0 33.0 35.0 29.0 36.0 96-97 33.20339392000192 35.0 33.0 35.0 29.0 35.5 98-99 33.29823731473399 35.0 33.0 35.0 29.0 35.0 100 32.893032493996714 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 4.0 19 41.0 20 257.0 21 1748.0 22 8142.0 23 27303.0 24 69334.0 25 142337.0 26 242770.0 27 367408.0 28 503245.0 29 640866.0 30 787626.0 31 946696.0 32 1142731.0 33 1394651.0 34 1753587.0 35 2256340.0 36 3143156.0 37 4743836.0 38 5420636.0 39 2307558.0 40 56654.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.56572363130659 21.24593947503878 14.173858099612485 25.014478794042144 2 14.084506228337428 22.495405561683015 40.647373242603024 22.77271496737653 3 17.25217318675666 27.540810204536154 31.131820804519734 24.07519580418745 4 12.122109061677447 19.4463042562781 39.56420187952141 28.867384802523045 5 12.225056533078819 38.941408588158374 36.25810173908491 12.575433139677896 6 28.085689804498042 40.10559878679013 19.33076669668948 12.477944712022344 7 24.81709025109174 33.44578115891762 24.524929318482116 17.212199271508528 8 23.741381250561748 37.30097172134436 21.784990187783016 17.172656840310875 9 25.310130124417267 16.352459595852775 21.427890905575993 36.90951937415396 10-11 23.26925294353989 27.182609096985942 30.024259034977447 19.523878924496724 12-13 24.425085064961657 24.84147873128433 29.829118446879328 20.904317756874686 14-15 21.60283649909714 26.011004692504624 27.394664245116534 24.9914945632817 16-17 21.078458170337345 29.070979781235273 27.994719868033684 21.855842180393694 18-19 21.1425971186805 28.345267912492105 29.605571183368507 20.906563785458886 20-21 22.063472851306997 27.56230238937133 29.344707951075254 21.02951680824642 22-23 21.701597166946346 27.49711794711127 29.268179188061684 21.5331056978807 24-25 21.474267287037048 27.61886871978008 29.335627374096855 21.571236619086015 26-27 21.53041365401631 27.71913676229402 29.178766244864768 21.571683338824904 28-29 21.52558766066239 27.75186365853177 29.207476347796334 21.515072333009506 30-31 21.84314939006777 27.579715368114222 29.08840578766786 21.48872945415015 32-33 21.65856077927656 27.789035605363583 29.033442993880566 21.518960621479295 34-35 21.693507378766235 27.779673081420043 29.06919424265596 21.45762529715777 36-37 21.73314625829106 27.685023366293564 29.01880431680639 21.56302605860899 38-39 21.610864506155394 27.80190982253717 29.040782703336337 21.546442967971096 40-41 21.851853537442626 27.698409992541308 28.882428382731874 21.567308087284196 42-43 21.74649337998374 27.782050291383587 28.714409531059452 21.757046797573224 44-45 21.8335521145831 27.923799921100972 28.49403013167831 21.748617832637613 46-47 21.9492768746992 27.8965285248007 28.193063835828365 21.961130764671736 48-49 21.90549615855877 27.98889068266738 28.17479563705154 21.930817521722314 50-51 21.870066531691762 28.104694637530393 28.02759277820968 21.997646052568165 52-53 21.996519461712854 28.01297784698194 27.95750720139499 22.032995489910213 54-55 21.99100586903072 27.91023333760727 28.070420989161722 22.02833980420029 56-57 21.977366451712015 27.964949430483493 28.052853750671602 22.00483036713289 58-59 21.938573120944035 27.96179401490767 28.004483748287907 22.095149115860394 60-61 22.07498169283373 27.943985646473013 28.078408756843633 21.902623903849626 62-63 21.9324226378561 28.027588652135414 28.015282334691662 22.02470637531682 64-65 21.855199552632936 28.017537587027526 28.01338880235196 22.11387405798758 66-67 21.943935360610407 28.089162362749086 27.980923056458295 21.985979220182212 68-69 21.88073079805186 28.151653129606245 27.902212233294488 22.065403839047406 70-71 21.944515756734468 27.853464008461838 27.857172608161452 22.344847626642242 72-73 21.976226745291193 27.870428456898505 27.826572643293307 22.32677215451699 74-75 21.848041447892506 28.093091253210417 27.93552524638055 22.12334205251653 76-77 22.002582680297202 27.912100432875704 27.828619700814105 22.25669718601299 78-79 21.941266431662605 27.942235884937034 27.668972641241226 22.44752504215914 80-81 22.1003348502396 28.10394709958742 27.641217976197378 22.1545000739756 82-83 22.13512404044827 27.89797621816888 27.799920636006625 22.166979105376228 84-85 22.09842241790491 27.900649617008316 27.713988173349772 22.286939791737005 86-87 21.909406800233267 28.093971738396473 27.778337638082945 22.218283823287315 88-89 22.10331146080497 28.085517161721963 27.727408049822554 22.083763327650512 90-91 22.188963763207 28.046852307436325 27.816467596058995 21.947716333297677 92-93 22.023150246598462 27.881030631772784 27.788838595658 22.30698052597075 94-95 21.972472222557045 28.10941263801131 27.90001536158664 22.018099777845002 96-97 22.135314878712105 28.124372685955024 27.9790437614028 21.761268673930072 98-99 22.956239049701637 30.17859004579742 28.2418376431406 18.62333326136034 100 22.01035709655002 31.193999638006396 21.997666121002464 24.797977144441123 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3775.0 1 3933.0 2 7132.5 3 10369.5 4 13030.0 5 22146.5 6 30397.5 7 35729.5 8 38547.0 9 36028.5 10 30021.5 11 23209.0 12 23097.5 13 31879.5 14 57678.5 15 96102.0 16 127121.0 17 142945.0 18 145155.0 19 137334.5 20 123758.0 21 110655.0 22 105100.0 23 113372.5 24 137161.5 25 176320.5 26 230677.0 27 291085.0 28 349007.5 29 411504.0 30 471160.0 31 527075.5 32 589788.5 33 650174.0 34 709324.0 35 764899.0 36 824126.0 37 880624.5 38 911675.0 39 932488.5 40 962715.0 41 989640.5 42 1007970.5 43 1025678.5 44 1038692.0 45 1052357.5 46 1059068.0 47 1056944.5 48 1047839.5 49 1025454.5 50 996852.0 51 957816.5 52 906008.5 53 847423.0 54 786471.5 55 721730.5 56 655983.0 57 587641.5 58 518373.5 59 450010.5 60 373537.0 61 299077.5 62 233570.0 63 177102.5 64 130692.5 65 94888.5 66 69240.0 67 51921.5 68 39330.0 69 28515.0 70 20273.0 71 14125.0 72 9527.5 73 6366.5 74 4326.5 75 2984.0 76 2075.0 77 1458.0 78 1088.5 79 833.0 80 608.5 81 435.5 82 331.5 83 236.5 84 172.0 85 130.0 86 98.5 87 68.5 88 45.5 89 35.5 90 27.0 91 21.0 92 15.5 93 7.5 94 2.5 95 2.5 96 2.5 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.678283661030331E-4 24-25 1.8310249601660519E-4 26-27 2.0246265157004872E-4 28-29 4.3797594913922295E-4 30-31 5.157096955392888E-4 32-33 4.7596672760395157E-4 34-35 0.0010277389256913149 36-37 4.4146963491141874E-4 38-39 0.0019777466214894414 40-41 1.1181557319830929E-4 42-43 1.913062133832265E-4 44-45 1.330136347313768E-4 46-47 2.8009183651135534E-5 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 2.072317111435309E-6 60-61 0.0 62-63 2.308877036093709E-5 64-65 0.0 66-67 0.0 68-69 4.913946918644137E-4 70-71 0.0 72-73 4.494655222198081E-4 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 2.3252157957210495E-6 88-89 0.0 90-91 0.0 92-93 4.4073952431392577E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1163.0 20-21 4544.0 22-23 7520.0 24-25 9803.0 26-27 14269.0 28-29 23002.0 30-31 42167.0 32-33 53481.0 34-35 70447.0 36-37 94057.0 38-39 116228.0 40-41 131666.0 42-43 157347.0 44-45 191089.0 46-47 186852.0 48-49 164959.0 50-51 140034.0 52-53 124239.0 54-55 132239.0 56-57 155544.0 58-59 102562.0 60-61 171587.0 62-63 163731.0 64-65 168454.0 66-67 182626.0 68-69 189349.0 70-71 195484.0 72-73 185036.0 74-75 183234.0 76-77 190441.0 78-79 207127.0 80-81 218758.0 82-83 211957.0 84-85 208825.0 86-87 219284.0 88-89 236659.0 90-91 268823.0 92-93 296721.0 94-95 368512.0 96-97 1000242.0 98-99 1713518.0 100-101 1.7453347E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.00141054572484 #Duplication Level Percentage of deduplicated Percentage of total 1 86.22545347567551 68.11932449523137 2 8.782290205422537 13.87626628100568 3 2.6386328454031793 6.25367150097392 4 1.0332664349840153 3.2651802333315874 5 0.48405114714287023 1.9120361700281479 6 0.26776682177943256 1.2692373970752533 7 0.1713859197907682 0.9477810587803002 8 0.10708008957193871 0.6767582494036575 9 0.0711802926935833 0.5061009173265568 >10 0.21177893522874072 2.541908910829548 >50 0.005064076567575017 0.26748450351214176 >100 0.0019543546427533806 0.24858910079412017 >500 5.306936712198474E-5 0.03246454390847714 >1k 4.233173001445782E-5 0.08319663779916188 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1557608495027165E-5 2 0.0 7.70507233001811E-6 0.0 0.0 1.1557608495027165E-5 3 3.852536165009055E-6 7.70507233001811E-6 0.0 3.852536165009055E-6 1.1557608495027165E-5 4 3.852536165009055E-6 2.311521699005433E-5 0.0 7.70507233001811E-6 1.1557608495027165E-5 5 3.852536165009055E-6 2.311521699005433E-5 0.0 7.70507233001811E-6 1.1557608495027165E-5 6 3.852536165009055E-6 2.311521699005433E-5 0.0 7.70507233001811E-6 1.9262680825045276E-5 7 3.852536165009055E-6 2.311521699005433E-5 0.0 7.70507233001811E-6 1.9262680825045276E-5 8 1.541014466003622E-5 2.311521699005433E-5 0.0 1.541014466003622E-5 2.311521699005433E-5 9 1.9262680825045276E-5 7.319818713517205E-5 0.0 1.9262680825045276E-5 3.082028932007244E-5 10-11 2.6967753155063385E-5 7.319818713517205E-5 0.0 2.311521699005433E-5 3.082028932007244E-5 12-13 2.6967753155063385E-5 7.319818713517205E-5 0.0 2.6967753155063385E-5 3.46728254850815E-5 14-15 2.6967753155063385E-5 1.0401847645524449E-4 0.0 3.082028932007244E-5 5.200923822762225E-5 16-17 2.6967753155063385E-5 1.0401847645524449E-4 0.0 3.6599093567586025E-5 7.319818713517205E-5 18-19 2.6967753155063385E-5 1.1557608495027166E-4 0.0 4.4304165897604134E-5 9.05345998777128E-5 20-21 2.8894021237567916E-5 1.2905996152780334E-4 0.0 6.356684672264941E-5 9.631340412522638E-5 22-23 3.082028932007244E-5 1.5602771468286675E-4 0.0 9.438713604272185E-5 1.0401847645524449E-4 24-25 3.082028932007244E-5 1.7914293167292108E-4 0.0 1.3291249769281242E-4 1.3098622961030788E-4 26-27 3.082028932007244E-5 1.887742720854437E-4 0.0 1.9840561249796632E-4 1.3098622961030788E-4 28-29 3.082028932007244E-5 1.907005401679482E-4 0.0 4.52672999388564E-4 1.3098622961030788E-4 30-31 3.082028932007244E-5 2.234470975705252E-4 0.0 0.0016373278701288486 1.3098622961030788E-4 32-33 3.082028932007244E-5 2.234470975705252E-4 0.0 0.004214674564519906 1.4832264235284864E-4 34-35 3.082028932007244E-5 2.6775126346812936E-4 0.0 0.007439247334632486 1.6180651893038032E-4 36-37 3.082028932007244E-5 3.082028932007244E-4 0.0 0.013466540164789154 1.6180651893038032E-4 38-39 3.46728254850815E-5 3.274655740257697E-4 0.0 0.0371423011668523 1.7143785934290297E-4 40-41 3.46728254850815E-5 3.4287571868580593E-4 0.0 0.06469756608707956 1.810691997554256E-4 42-43 3.46728254850815E-5 3.544333271808331E-4 0.0 0.07880362725526022 1.8684800400293919E-4 44-45 3.6599093567586025E-5 4.2185271006849154E-4 0.0 0.09679689741393502 1.945530763329573E-4 46-47 3.852536165009055E-5 4.661568759660957E-4 0.0 0.11420458207552844 1.9840561249796632E-4 48-49 3.852536165009055E-5 4.680831440486002E-4 0.0 0.13068187925327215 2.234470975705252E-4 50-51 3.852536165009055E-5 5.297237226887451E-4 0.0 0.14751168349011423 2.234470975705252E-4 52-53 3.852536165009055E-5 5.316499907712496E-4 0.0 0.20789826160854863 2.44636046478075E-4 54-55 3.852536165009055E-5 5.335762588537542E-4 0.0 0.2812293612414135 2.735300677156429E-4 56-57 3.852536165009055E-5 5.393550631012677E-4 0.0 0.34682071571877515 2.831614081281656E-4 58-59 3.852536165009055E-5 5.412813311837723E-4 0.0 0.49111938404727185 2.870139442931746E-4 60-61 3.852536165009055E-5 5.489864035137903E-4 0.0 0.6223637335806353 2.985715527882018E-4 62-63 3.852536165009055E-5 5.624702800913221E-4 0.0 0.6288571832867581 3.1205542936573344E-4 64-65 3.852536165009055E-5 6.356684672264941E-4 0.0 0.6343181533006584 3.159079655307425E-4 66-67 3.852536165009055E-5 6.452998076390168E-4 0.0 0.6390914456091046 3.236130378607607E-4 68-69 3.852536165009055E-5 6.60709952299053E-4 0.0 0.644128636644854 3.3324437827328326E-4 70-71 3.852536165009055E-5 6.741938288765846E-4 0.0 0.6480601498012457 3.5443332718083307E-4 72-73 3.852536165009055E-5 6.838251692891074E-4 0.0 0.6511132847120153 3.929586888309236E-4 74-75 3.852536165009055E-5 6.97309045866639E-4 0.0 0.6533708709047107 3.929586888309236E-4 76-77 3.852536165009055E-5 7.300556032692159E-4 0.0 0.6556188257569935 3.968112249959327E-4 78-79 3.852536165009055E-5 7.396869436817386E-4 0.0 0.6571656190272446 3.968112249959327E-4 80-81 3.852536165009055E-5 7.435394798467476E-4 0.0 0.6577820248136461 4.122213696559689E-4 82-83 3.852536165009055E-5 7.473920160117567E-4 0.0 0.6582154351322096 4.411153908935368E-4 84-85 3.852536165009055E-5 7.685809649193065E-4 0.0 0.6583406425575724 4.4304165897604135E-4 86-87 3.852536165009055E-5 7.955487180743699E-4 0.0 0.6584369559616976 4.4304165897604135E-4 88 3.852536165009055E-5 8.39852883971974E-4 0.0 0.6584523661063577 4.468941951410504E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 31350 0.0 48.294136 1 GTATCAA 55910 0.0 37.852554 1 ATCAACG 69675 0.0 29.603226 3 TCAACGC 69985 0.0 29.453522 4 CAACGCA 71235 0.0 28.924519 5 TATCAAC 74180 0.0 28.056585 2 AACGCAG 73885 0.0 27.998528 6 ACGCAGA 85220 0.0 24.1677 7 CGCAGAG 86730 0.0 23.751928 8 GTACATG 75585 0.0 20.31162 1 TACATGG 74440 0.0 20.100147 2 GCAGAGT 102630 0.0 19.87793 9 AGACCGA 18575 0.0 19.725576 88-89 ACATGGG 74645 0.0 19.609564 3 CGAGACC 18780 0.0 19.463799 86-87 AGAGTAC 91775 0.0 19.259205 10-11 GAGACCG 18775 0.0 19.13452 88-89 GACCGAG 19040 0.0 19.110117 90-91 ACCGAGG 19880 0.0 18.528782 90-91 ACGAGAC 19795 0.0 18.38365 86-87 >>END_MODULE