##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139293_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17313138 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.66017206124043 31.0 31.0 34.0 30.0 34.0 2 31.62890776934834 31.0 31.0 34.0 30.0 34.0 3 31.79581795050672 31.0 31.0 34.0 30.0 34.0 4 35.54846983833895 37.0 35.0 37.0 33.0 37.0 5 35.469119174120834 37.0 35.0 37.0 33.0 37.0 6 35.536603243155575 37.0 35.0 37.0 33.0 37.0 7 35.43722657325321 37.0 35.0 37.0 33.0 37.0 8 35.437342092461805 37.0 35.0 37.0 33.0 37.0 9 36.97889019310075 39.0 37.0 39.0 33.0 39.0 10-11 36.90879281964945 39.0 37.0 39.0 33.0 39.0 12-13 36.871680483341606 39.0 37.0 39.0 32.5 39.0 14-15 38.043366546261 40.0 37.0 41.0 33.0 41.0 16-17 38.05616763408228 40.0 37.0 41.0 33.0 41.0 18-19 38.119184892998604 40.0 37.0 41.0 33.0 41.0 20-21 38.14391165149651 40.0 37.0 41.0 33.0 41.0 22-23 38.10905425176203 40.0 37.0 41.0 33.0 41.0 24-25 38.060986405551674 40.0 37.0 41.0 33.0 41.0 26-27 37.929060643472894 40.0 37.0 41.0 33.0 41.0 28-29 37.85025223791537 40.0 37.0 41.0 32.0 41.0 30-31 37.760693045140115 40.0 37.0 41.0 32.0 41.0 32-33 37.65790347946708 40.0 36.5 41.0 32.0 41.0 34-35 37.576654121835276 40.0 36.0 41.0 32.0 41.0 36-37 37.517459965822546 40.0 36.0 41.0 31.5 41.0 38-39 37.45589126116354 39.5 36.0 41.0 31.0 41.0 40-41 37.404747993900244 39.0 36.0 41.0 31.0 41.0 42-43 37.341037016723675 39.0 36.0 41.0 31.0 41.0 44-45 37.2833813429839 39.0 36.0 41.0 31.0 41.0 46-47 37.23972198668479 39.0 36.0 41.0 31.0 41.0 48-49 37.158150456741126 39.0 36.0 41.0 31.0 41.0 50-51 37.07720058194271 39.0 36.0 41.0 31.0 41.0 52-53 36.98339072865157 39.0 35.0 41.0 31.0 41.0 54-55 36.846854027391345 39.0 35.0 40.0 30.0 41.0 56-57 36.6793582128804 39.0 35.0 40.0 30.0 41.0 58-59 36.52325215844229 38.0 35.0 40.0 30.0 41.0 60-61 36.35690199871025 38.0 34.5 40.0 30.0 41.0 62-63 36.16732070253974 38.0 34.0 40.0 29.0 41.0 64-65 35.956950772072986 38.0 34.0 40.0 29.0 41.0 66-67 35.69447450352561 37.0 34.0 40.0 29.0 41.0 68-69 35.42211161482075 37.0 34.0 39.5 29.0 41.0 70-71 35.1081085301815 36.0 33.5 39.0 28.0 41.0 72-73 34.824688296064124 36.0 33.0 39.0 28.0 40.0 74-75 34.51945674975203 35.0 33.0 38.5 28.0 40.0 76-77 34.19286678724991 35.0 33.0 37.5 28.0 39.5 78-79 34.174521761554914 35.0 33.0 37.0 29.0 39.0 80-81 33.9471609758032 35.0 33.0 37.0 29.0 39.0 82-83 33.666670186119106 35.0 33.0 36.0 28.0 38.5 84-85 33.4440329932998 35.0 33.0 36.0 28.0 37.0 86-87 33.23595293419008 35.0 32.0 35.5 28.0 37.0 88-89 33.190434595482515 35.0 32.5 35.0 28.5 36.5 90-91 33.3021888254532 35.0 33.0 35.0 29.0 36.0 92-93 33.28231715624665 35.0 33.0 35.0 29.0 36.0 94-95 33.25113435348919 35.0 33.0 35.0 29.0 36.0 96-97 33.28487015429724 35.0 33.0 35.0 29.0 36.0 98-99 33.373235675247685 35.0 33.0 35.0 29.0 35.0 100 32.956658926769016 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 20.0 20 149.0 21 1023.0 22 4796.0 23 16352.0 24 41341.0 25 85491.0 26 148233.0 27 227115.0 28 312471.0 29 401340.0 30 493468.0 31 597180.0 32 722877.0 33 883987.0 34 1121619.0 35 1451271.0 36 2039616.0 37 3147027.0 38 3833568.0 39 1735858.0 40 48329.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.78353895174867 21.39355095534963 14.152321780141763 24.67058831275994 2 13.894326955633346 22.593500958636152 41.0234701531288 22.488701932601703 3 17.07508482864285 27.991222619492778 31.28115192058193 23.65254063128244 4 11.850844139288903 19.534719817978694 40.01253267894012 28.60190336379228 5 11.964728751079095 39.23121851162972 36.43281189117767 12.371240846113512 6 27.671269067456173 40.35377064515976 19.608397969218522 12.366562318165546 7 24.555843082865742 33.68381283624032 24.77211236923081 16.988231711663133 8 23.665080241375076 37.32508803430088 21.963303244045072 17.046528480278965 9 25.33165275988674 16.303999887253255 21.64300313438269 36.72134421847732 10-11 23.03009714356808 27.347468725773457 30.23495220797062 19.387481922687847 12-13 24.240634482322037 25.137615145215154 30.07314445249613 20.548605919966676 14-15 21.41800925978872 26.28661251357206 27.72556887145473 24.569809355184486 16-17 20.77156954446964 29.35743941970543 28.286585020000416 21.584406015824513 18-19 20.824356046835646 28.565592788551676 30.065306474193182 20.544744690419495 20-21 21.81463470312777 27.711283665586638 29.785173105285086 20.68890852600051 22-23 21.439427961610587 27.694647666896095 29.640626017400184 21.225298354093137 24-25 21.16615628255039 27.834706632342716 29.731454944093162 21.267682141013736 26-27 21.23173053931875 27.926927563306876 29.591953581208468 21.249388316165906 28-29 21.20426588361428 27.962096385785447 29.62515411151247 21.208483619087804 30-31 21.452569004248385 27.814114362968294 29.571052194606068 21.16226443817725 32-33 21.281901304006453 27.976557572130854 29.469353084121018 21.272188039741675 34-35 21.412103860428573 28.016212582688432 29.436077730180234 21.13560582670276 36-37 21.39282642245631 27.95465107952846 29.363362077030793 21.28916042098444 38-39 21.302264966477036 27.969473494190076 29.405011665785853 21.323249873547038 40-41 21.58342945446684 27.846593614605197 29.314067777291612 21.255909153636345 42-43 21.379471115044034 27.972913081839224 29.108765281041094 21.53885052207565 44-45 21.501822338248985 28.104427546900272 28.87674361328436 21.517006501566385 46-47 21.568528388619853 28.116840232182444 28.648438536238608 21.666192842959095 48-49 21.561401741467723 28.287182834090892 28.51197259437692 21.639442830064468 50-51 21.541787595308207 28.39689993754649 28.266994921081068 21.79431754606424 52-53 21.539841222557147 28.226083545701975 28.244295762230127 21.989779469510758 54-55 21.667136209973222 28.0318734422093 28.50711425596057 21.793876091856905 56-57 21.55799271665339 27.822318312890005 28.600067257733624 22.019621712722977 58-59 21.45124997208737 27.715114397484314 28.583644657818247 22.249990972610068 60-61 21.605369983067934 27.840948460490615 28.79874134600331 21.75494021043814 62-63 21.253721942281263 28.036361386311537 28.753632121653062 21.95628454975414 64-65 21.13239999359019 28.263113955447412 28.493314158361926 22.11117189260047 66-67 21.224719292566153 28.709638577797563 28.137142424261043 21.92849970537524 68-69 21.293940915781526 28.708948145141438 27.96764609505167 22.029464844025366 70-71 21.299791659025953 28.271221751614995 27.94836511022516 22.4806214791339 72-73 21.459791065403845 27.95475305881875 27.981922686069673 22.603533189707736 74-75 21.510150227912867 27.979874967739516 28.12848969232386 22.381485112023757 76-77 21.75817732945099 27.91202531601588 27.66194855373712 22.667848800796005 78-79 21.896405730212457 27.990630512608806 27.324026613790263 22.788937143388473 80-81 21.809260047680045 28.241855597972084 27.442632341208583 22.506252013139292 82-83 21.761294626703062 28.053400167018296 27.56338868685454 22.6219165194241 84-85 21.82656753169524 28.38290856880989 27.458385924087796 22.332137975407072 86-87 22.108820587935732 28.31425753563922 27.525686917142984 22.051234959282066 88-89 21.927544700163192 28.38402582367308 27.7887670821339 21.89966239402982 90-91 21.911951938499854 28.093131174402046 27.747931724980624 22.246985162117475 92-93 21.880916119156872 27.762077569485736 27.915492580482866 22.441513730874522 94-95 21.307406101054454 28.156216252421412 28.36953916817041 22.166838478353725 96-97 21.425545126250476 28.166139507865505 28.44455397031467 21.96376139556935 98-99 22.507328537299127 30.059079511459974 28.793408483516163 18.64018346772473 100 21.58171694155846 31.152706291980536 22.485404383102374 24.78017238335863 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2795.0 1 2962.0 2 5286.0 3 7527.0 4 9517.0 5 16557.5 6 22788.0 7 26335.0 8 27827.0 9 25319.0 10 20668.0 11 15642.0 12 15441.5 13 22255.0 14 41674.5 15 70374.0 16 93566.0 17 104799.5 18 105488.5 19 99091.5 20 88897.5 21 78675.5 22 73209.5 23 78191.5 24 94641.5 25 120545.5 26 155161.0 27 194355.0 28 236962.5 29 284381.5 30 328026.5 31 368560.5 32 412794.5 33 453169.0 34 492229.0 35 532077.0 36 571029.5 37 607375.0 38 632562.5 39 649769.0 40 668259.5 41 681587.5 42 688406.0 43 697720.5 44 705245.5 45 710596.5 46 709703.5 47 704276.5 48 696397.0 49 677223.5 50 652221.5 51 622035.5 52 582178.0 53 536697.0 54 491443.0 55 445475.0 56 400276.0 57 355297.0 58 310891.5 59 266982.0 60 219595.0 61 174397.5 62 134787.0 63 102443.5 64 75917.0 65 54710.0 66 39623.0 67 29345.5 68 22022.0 69 15942.5 70 11355.0 71 8232.5 72 5806.5 73 4029.5 74 2758.5 75 1882.5 76 1330.0 77 915.0 78 634.0 79 474.0 80 343.0 81 245.5 82 190.5 83 134.0 84 97.0 85 73.5 86 56.5 87 45.0 88 30.5 89 18.0 90 10.5 91 7.5 92 6.0 93 4.0 94 2.0 95 1.0 96 1.5 97 1.5 98 1.5 99 1.5 100 1.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.2243730914987204E-4 24-25 1.473732325073102E-4 26-27 1.5900068474367616E-4 28-29 3.81851136202395E-4 30-31 4.3155935021412005E-4 32-33 4.38212272694796E-4 34-35 8.844693352735798E-4 36-37 4.5245846664803124E-4 38-39 0.0019835940074716743 40-41 8.536679743191947E-5 42-43 1.3918286333205256E-4 44-45 1.0142652832326854E-4 46-47 3.610848288163025E-5 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 1.2475085694482407E-5 64-65 0.0 66-67 0.0 68-69 5.014707466241436E-4 70-71 0.0 72-73 4.3250087321275926E-4 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 5.234378124833492E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 725.0 20-21 2977.0 22-23 5115.0 24-25 6635.0 26-27 9817.0 28-29 17159.0 30-31 32311.0 32-33 40596.0 34-35 53505.0 36-37 71914.0 38-39 62448.0 40-41 98613.0 42-43 115940.0 44-45 142803.0 46-47 138234.0 48-49 120306.0 50-51 66972.0 52-53 22116.0 54-55 21803.0 56-57 21626.0 58-59 72527.0 60-61 127004.0 62-63 119068.0 64-65 122400.0 66-67 132594.0 68-69 137870.0 70-71 140872.0 72-73 133523.0 74-75 131819.0 76-77 136859.0 78-79 148421.0 80-81 155575.0 82-83 150181.0 84-85 146160.0 86-87 153239.0 88-89 166020.0 90-91 187211.0 92-93 203872.0 94-95 248536.0 96-97 640434.0 98-99 1193920.0 100-101 1.1613418E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.76147429635252 #Duplication Level Percentage of deduplicated Percentage of total 1 86.24236421532966 68.78818116617688 2 8.995908777380823 14.350538934387853 3 2.5311157901873718 6.056565811203662 4 1.0138352762406062 3.2345998530640228 5 0.4651633145346259 1.8551055877929854 6 0.2569267316534906 1.2295712941695451 7 0.1528724737981612 0.85353337226303 8 0.09292564429967554 0.5929509111424455 9 0.06512776253808021 0.4675217721894032 >10 0.17828137489670892 2.10194474481345 >50 0.003926415393047744 0.2160156552270922 >100 0.0014802897861492998 0.20859018576740532 >500 5.7558527334586046E-5 0.03015829295091063 >1k 1.437543425139262E-5 0.01472241885131104 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.7759604295882125E-6 2 0.0 2.310384171835285E-5 0.0 5.7759604295882125E-6 5.7759604295882125E-6 3 0.0 2.310384171835285E-5 0.0 5.7759604295882125E-6 5.7759604295882125E-6 4 0.0 5.775960429588212E-5 0.0 3.465576257752927E-5 5.7759604295882125E-6 5 1.7327881288764637E-5 5.775960429588212E-5 0.0 5.1983643866293906E-5 5.7759604295882125E-6 6 1.7327881288764637E-5 5.775960429588212E-5 0.0 5.775960429588212E-5 1.7327881288764637E-5 7 1.7327881288764637E-5 5.775960429588212E-5 0.0 1.2129516902135245E-4 1.7327881288764637E-5 8 2.887980214794106E-5 6.931152515505855E-5 0.0 1.5595093159888172E-4 1.7327881288764637E-5 9 2.887980214794106E-5 1.5017497116929352E-4 0.0 1.90606694176411E-4 1.7327881288764637E-5 10-11 4.62076834367057E-5 1.5017497116929352E-4 0.0 2.1371053589476385E-4 1.7327881288764637E-5 12-13 5.1983643866293906E-5 1.5306295138408762E-4 0.0 2.1948649632435205E-4 1.7327881288764637E-5 14-15 6.0647584510676226E-5 2.1371053589476383E-4 0.0 2.8013408083502826E-4 1.7327881288764637E-5 16-17 8.952738665861729E-5 2.1948649632435205E-4 0.0 3.234537840569399E-4 2.310384171835285E-5 18-19 1.1551920859176424E-4 2.512542786870872E-4 0.0 3.6966146749364554E-4 2.887980214794106E-5 20-21 1.5306295138408762E-4 2.887980214794106E-4 0.0 4.274210717895277E-4 2.887980214794106E-5 22-23 1.7905477331723457E-4 3.0612590276817524E-4 0.0 4.4186097286349823E-4 4.331970322191159E-5 24-25 2.2815043696873438E-4 3.3789368513091036E-4 0.0 5.140604782333509E-4 6.0647584510676226E-5 26-27 2.7435812040544006E-4 3.6388550706405734E-4 0.0 6.411316076842915E-4 6.353556472547033E-5 28-29 2.859100412646165E-4 3.6677348727885147E-4 0.0 0.0012620473538650244 6.353556472547033E-5 30-31 2.887980214794106E-4 4.0431723007117485E-4 0.0 0.0035002320203304568 6.353556472547033E-5 32-33 3.1190186319776344E-4 4.07205210285969E-4 0.0 0.008193199869370879 6.353556472547033E-5 34-35 3.4655762577529275E-4 4.7074077501143923E-4 0.0 0.01392584059573718 6.353556472547033E-5 36-37 3.6677348727885147E-4 5.313883595221155E-4 0.0 0.026491442510306336 6.353556472547033E-5 38-39 3.696614674936456E-4 5.544922012404684E-4 0.0 0.13654948051589494 6.353556472547033E-5 40-41 3.841013685676161E-4 6.411316076842915E-4 0.0 0.25610608544794133 6.931152515505855E-5 42-43 4.0431723007117485E-4 6.786753504766149E-4 0.0 0.287824772147025 6.931152515505855E-5 44-45 4.1009319050076305E-4 7.768666777796145E-4 0.0 0.33041381637459366 7.219950536985266E-5 46-47 4.303090520043218E-4 8.317383018607025E-4 0.0 0.3739270142708965 7.508748558464676E-5 48-49 4.331970322191159E-4 8.375142622902908E-4 0.0 0.416111741268394 8.663940644382319E-5 50-51 4.331970322191159E-4 9.674733719560256E-4 0.0 0.4592841574993511 8.663940644382319E-5 52-53 4.389729926487041E-4 9.761373126004079E-4 0.0 0.8417711451268972 8.952738665861729E-5 54-55 4.4186097286349823E-4 9.848012532447901E-4 0.0 1.3338656458465241 9.24153668734114E-5 56-57 4.4474895307829236E-4 0.0010165690356075253 0.0 1.871535362335817 9.24153668734114E-5 58-59 4.534128937226747E-4 0.0010223449960371136 0.0 2.444929394082113 9.24153668734114E-5 60-61 4.736287552262334E-4 0.0010512247981850544 0.0 2.60150990536782 9.24153668734114E-5 62-63 4.765167354410275E-4 0.0010685526794738192 0.0 2.6081060521784094 9.819132730299961E-5 64-65 4.851806760854098E-4 0.00119562380892476 0.0 2.6138675727069236 9.819132730299961E-5 66-67 5.025085573741744E-4 0.0012042877495691423 0.0 2.6188175707950805 9.819132730299961E-5 68-69 5.082845178037627E-4 0.0012649353340798185 0.0 2.623724249180016 9.819132730299961E-5 70-71 5.082845178037627E-4 0.0012995910966573476 0.0 2.627813629164164 9.819132730299961E-5 72-73 5.082845178037627E-4 0.0013053670570869359 0.0 2.630649625735092 1.0396728773258781E-4 74-75 5.082845178037627E-4 0.0013342468592348771 0.0 2.63291957818392 1.0396728773258781E-4 76-77 5.082845178037627E-4 0.0014324381865378766 0.0 2.6353888012675695 1.0396728773258781E-4 78-79 5.082845178037627E-4 0.0014670939491154059 0.0 2.6369743024054912 1.0396728773258781E-4 80-81 5.256123990925273E-4 0.0014670939491154059 0.0 2.637549010468235 1.1263122837697014E-4 82-83 5.342763397369096E-4 0.0014728699095449941 0.0 2.637982207500454 1.2129516902135245E-4 84-85 5.42940280381292E-4 0.0014873098106189646 0.0 2.6381785901550603 1.2129516902135245E-4 86-87 5.42940280381292E-4 0.0015075256721225234 0.0 2.6382710055219336 1.2418314923614657E-4 88 5.42940280381292E-4 0.0016114929598551112 0.0 2.638279669462578 1.2707112945094067E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23285 0.0 50.40832 1 ATCTCGT 10595 0.0 41.685528 94 GTATCAA 41955 0.0 37.015976 1 TATCTCG 13540 0.0 35.297146 94 ATCAACG 51945 0.0 29.362484 3 TCAACGC 52070 0.0 29.266998 4 CAACGCA 52660 0.0 28.972052 5 TATCAAC 54430 0.0 28.253134 2 AACGCAG 54475 0.0 28.070486 6 TATGCCG 5830 0.0 26.712196 86-87 GCCGTCT 6355 0.0 26.400154 90-91 ATGCCGT 6335 0.0 26.31796 88-89 TCTCGTA 6180 0.0 25.15623 82-83 TGCCGTC 6245 0.0 24.84388 88-89 ACGCAGA 62745 0.0 24.287714 7 CTCGTAT 6190 0.0 24.13318 82-83 CCGTCTT 6580 0.0 24.128426 90-91 TCGTATG 6845 0.0 24.084852 84-85 CGCAGAG 63350 0.0 24.042063 8 CGTATGC 6815 0.0 22.737852 84-85 >>END_MODULE