##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139290_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 33990618 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.623387753644256 31.0 31.0 34.0 30.0 34.0 2 31.59326299980777 31.0 31.0 34.0 30.0 34.0 3 31.755320629945594 31.0 31.0 34.0 30.0 34.0 4 35.51347286477698 37.0 35.0 37.0 33.0 37.0 5 35.427211061593525 37.0 35.0 37.0 33.0 37.0 6 35.49424861883947 37.0 35.0 37.0 33.0 37.0 7 35.38827469980099 37.0 35.0 37.0 33.0 37.0 8 35.38929807042638 37.0 35.0 37.0 33.0 37.0 9 36.91565469624589 39.0 37.0 39.0 33.0 39.0 10-11 36.84216385827406 39.0 37.0 39.0 32.5 39.0 12-13 36.798991401097794 39.0 37.0 39.0 32.0 39.0 14-15 37.95571675101641 40.0 37.0 41.0 33.0 41.0 16-17 37.96594854497791 40.0 37.0 41.0 33.0 41.0 18-19 38.025867534976854 40.0 37.0 41.0 33.0 41.0 20-21 38.04715738075617 40.0 37.0 41.0 33.0 41.0 22-23 38.00971236796538 40.0 37.0 41.0 33.0 41.0 24-25 37.959620369301824 40.0 37.0 41.0 33.0 41.0 26-27 37.819924969155466 40.0 37.0 41.0 32.0 41.0 28-29 37.73761433194795 40.0 37.0 41.0 32.0 41.0 30-31 37.64438193805279 40.0 37.0 41.0 32.0 41.0 32-33 37.53663261564688 40.0 36.0 41.0 32.0 41.0 34-35 37.45233142576778 39.0 36.0 41.0 31.0 41.0 36-37 37.38918039356 39.0 36.0 41.0 31.0 41.0 38-39 37.32658886510354 39.0 36.0 41.0 31.0 41.0 40-41 37.27183030803498 39.0 36.0 41.0 31.0 41.0 42-43 37.20619967304368 39.0 36.0 41.0 31.0 41.0 44-45 37.1436976130004 39.0 36.0 41.0 31.0 41.0 46-47 37.09232434388865 39.0 36.0 41.0 31.0 41.0 48-49 37.00769457596156 39.0 35.0 41.0 30.5 41.0 50-51 36.918358237576555 39.0 35.0 40.5 30.0 41.0 52-53 36.82084210704712 39.0 35.0 40.0 30.0 41.0 54-55 36.678072206998344 39.0 35.0 40.0 30.0 41.0 56-57 36.509274685914974 38.0 35.0 40.0 30.0 41.0 58-59 36.34284984642476 38.0 34.5 40.0 29.5 41.0 60-61 36.16651253491872 38.0 34.0 40.0 29.0 41.0 62-63 35.96142450199441 38.0 34.0 40.0 29.0 41.0 64-65 35.724355187078984 37.0 34.0 40.0 29.0 41.0 66-67 35.450789066922646 37.0 34.0 40.0 28.0 41.0 68-69 35.181199990009944 36.0 34.0 39.0 28.0 41.0 70-71 34.86621609414434 36.0 33.0 39.0 28.0 40.5 72-73 34.57601341469986 35.5 33.0 38.5 28.0 40.0 74-75 34.28671126328484 35.0 33.0 38.0 28.0 40.0 76-77 33.97884124435995 35.0 32.5 37.0 28.0 39.0 78-79 33.97235098811325 35.0 33.0 37.0 28.0 39.0 80-81 33.77529166892377 35.0 33.0 36.5 28.0 39.0 82-83 33.52122395391591 35.0 32.5 36.0 28.0 38.0 84-85 33.303633990235866 35.0 32.0 36.0 28.0 37.0 86-87 33.117329696414004 35.0 32.0 35.0 28.0 37.0 88-89 33.09037181414199 35.0 32.0 35.0 28.5 36.5 90-91 33.20770989871162 35.0 33.0 35.0 29.0 36.0 92-93 33.19745912645173 35.0 33.0 35.0 29.0 36.0 94-95 33.18900587686791 35.0 33.0 35.0 29.0 36.0 96-97 33.2390595620853 35.0 33.0 35.0 29.0 35.5 98-99 33.32411679026234 35.0 33.0 35.0 29.0 35.0 100 32.922922292380925 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 6.0 19 43.0 20 358.0 21 2305.0 22 10327.0 23 34879.0 24 88707.0 25 180964.0 26 312412.0 27 470921.0 28 647516.0 29 828535.0 30 1016110.0 31 1226357.0 32 1477571.0 33 1804320.0 34 2275626.0 35 2940528.0 36 4108687.0 37 6214000.0 38 7110670.0 39 3152778.0 40 86996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.02730106289918 21.080667024059405 14.124597558067348 24.767434354974068 2 14.200718562986998 22.382308553495555 40.582933796614114 22.83403908690333 3 17.3612083193074 27.496711004195333 31.066696110085434 24.075384566411824 4 12.218904051700385 19.248605600521884 39.27527884312077 29.25721150465696 5 12.287637724033143 38.866524874599214 36.13585960690682 12.709977794460814 6 28.33145310861956 39.84749850679384 19.146112612603865 12.674935771982728 7 24.972355607067808 33.412222749230395 24.34456766864315 17.270853975058646 8 23.879092165961797 37.208046643929805 21.604796947204665 17.308064242903733 9 25.336358991766495 16.36568655503704 21.39091145680258 36.90704299639388 10-11 23.41651893472487 27.082342251029385 29.824145886373703 19.67699292787204 12-13 24.538416747821415 24.826905177187424 29.757252427714025 20.87742564727714 14-15 21.750609241644266 25.995139305793145 27.25493840682744 24.99931304573515 16-17 21.15761325669336 29.097092321181094 27.858841813349787 21.88645260877575 18-19 21.224084540033957 28.250941186182608 29.62419659448381 20.900777679299622 20-21 22.129773141529665 27.417439362970814 29.41766185313713 21.035125642362388 22-23 21.803406547953415 27.33255848674996 29.335224625636936 21.52881033965969 24-25 21.531693773516427 27.514720609951915 29.392288942675744 21.561296673855914 26-27 21.624590286272017 27.566877231157733 29.254032848249086 21.554499634321168 28-29 21.59023836278432 27.519443775081882 29.325710429108177 21.56460743302562 30-31 21.836105882238744 27.452473909409463 29.15285245646066 21.558567751891133 32-33 21.652673589283506 27.654431899217858 29.078458096123356 21.61443641537528 34-35 21.78483692946143 27.624415716167235 29.079465920061892 21.51128143430945 36-37 21.801795368505374 27.54969213384268 29.004925641493802 21.643586856158148 38-39 21.686645881868056 27.66708210580788 29.05312009547903 21.593151916845038 40-41 21.893838406394053 27.562064557706773 28.888506068819964 21.655590967079213 42-43 21.79170296294702 27.699760944862504 28.674547065844568 21.833989026345908 44-45 21.917648666813676 27.76540798136623 28.482581790413043 21.83436156140705 46-47 22.04148618706089 27.82108173072385 28.139012219273322 21.998419862941933 48-49 21.971245301012893 27.95661576074739 28.061748368998728 22.010390569240986 50-51 21.98192121204641 28.07060531630492 27.94873067980626 21.99874279184241 52-53 22.139346474796813 27.92614583942474 27.880970071806882 22.05353761397156 54-55 22.073995726314593 27.848145266849134 27.965519043707047 22.11233996312923 56-57 22.070132361595654 27.950398617279298 27.959029019082358 22.020440002042687 58-59 22.081137223076713 27.992188918518814 27.881821901361388 22.044851957043086 60-61 22.12412989130399 27.963309436406565 27.91129119426119 22.001269478028256 62-63 22.084894014325993 28.036375557017113 27.898464807202615 21.980265621454283 64-65 22.10749387199391 27.972125106763524 27.84603553112338 22.074345490119182 66-67 22.122978992540627 27.998725259947776 27.75688724949643 22.121408498015164 68-69 22.097307008084446 27.959005222069656 27.81726031356969 22.126427456276204 70-71 22.10710140166264 27.789977788299915 27.878425254558703 22.224495555478747 72-73 22.1317023013712 27.858799846186077 27.78192165750194 22.227576194940784 74-75 21.959678910804104 27.990517419525112 27.829082598688952 22.220721070981828 76-77 22.164522201834156 27.894802048023127 27.75807761271797 22.18259813742475 78-79 22.0992253701005 27.92273177167761 27.73184140901406 22.24620144920783 80-81 22.114326861155078 27.963787146992225 27.722675171689286 22.19921082016341 82-83 22.091457174619173 27.923625625568548 27.813911432273514 22.171005767538762 84-85 22.125618441692463 27.952047015651875 27.769048866659823 22.15328567599584 86-87 22.046868218146574 27.947452805665474 27.86422019794576 22.1414587782422 88-89 22.076185719015488 27.90676317009007 27.830666638971284 22.18638447192316 90-91 22.079203718166823 27.946839141499268 27.860775874229056 22.113181266104856 92-93 22.07257239282627 27.942901732577436 27.837059764036354 22.14746611055994 94-95 21.94332688411415 27.95235135285243 27.923417360851694 22.180904402181728 96-97 22.02016179626031 28.082312639920453 27.94788913697146 21.94963642684777 98-99 23.020946528683204 30.065006250118252 28.13831061036385 18.775736610834695 100 22.074621931155406 30.99516517899873 22.002094737227747 24.928118152618115 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6447.0 1 6531.5 2 10566.5 3 14707.5 4 18031.5 5 30737.0 6 42702.5 7 50635.0 8 55124.0 9 51528.5 10 42287.5 11 32074.5 12 31962.5 13 44686.5 14 80765.5 15 134599.0 16 178416.5 17 200942.0 18 204659.0 19 194670.5 20 176803.5 21 158564.5 22 149464.5 23 158763.0 24 189108.5 25 240153.0 26 307499.5 27 381303.0 28 459238.0 29 543806.5 30 626242.0 31 705111.5 32 791858.5 33 874200.5 34 945631.5 35 1010400.5 36 1077095.0 37 1141203.0 38 1191634.5 39 1226990.0 40 1259386.0 41 1289762.5 42 1307917.5 43 1325645.5 44 1339361.0 45 1356476.5 46 1362770.0 47 1350758.0 48 1337824.0 49 1309342.5 50 1274559.0 51 1236818.5 52 1182803.0 53 1116215.0 54 1046582.5 55 969714.5 56 888557.0 57 806707.5 58 719755.5 59 629113.5 60 528833.5 61 430590.0 62 342334.5 63 265301.0 64 199296.0 65 146344.5 66 109096.5 67 83018.0 68 62798.0 69 45901.5 70 33208.5 71 24630.0 72 17909.5 73 12624.0 74 8876.0 75 6146.0 76 4190.0 77 2811.5 78 1984.0 79 1462.0 80 1064.5 81 749.5 82 550.0 83 389.0 84 281.0 85 213.5 86 165.5 87 133.0 88 100.5 89 73.0 90 47.5 91 29.5 92 18.5 93 8.5 94 2.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.413082497331447E-4 24-25 1.560136498991585E-4 26-27 1.6050144538914024E-4 28-29 4.2582967275755845E-4 30-31 4.292834891241471E-4 32-33 4.4044016999394335E-4 34-35 9.48221112006752E-4 36-37 4.4147699234478897E-4 38-39 0.001996373528505101 40-41 7.506924424623895E-5 42-43 1.314027460636495E-4 44-45 9.129179857760987E-5 46-47 2.455582540531884E-5 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 2.2752716987258137E-5 64-65 0.0 66-67 0.0 68-69 4.4411521885715215E-4 70-71 0.0 72-73 3.7067129553307576E-4 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.6148796834290806E-6 88-89 0.0 90-91 0.0 92-93 4.496638088533109E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1554.0 20-21 5477.0 22-23 9481.0 24-25 13678.0 26-27 19642.0 28-29 32845.0 30-31 60484.0 32-33 76447.0 34-35 102457.0 36-37 139073.0 38-39 180797.0 40-41 191102.0 42-43 228432.0 44-45 279914.0 46-47 271330.0 48-49 239428.0 50-51 213194.0 52-53 200271.0 54-55 210908.0 56-57 224087.0 58-59 232297.0 60-61 236341.0 62-63 222696.0 64-65 229113.0 66-67 246238.0 68-69 257543.0 70-71 262359.0 72-73 247077.0 74-75 243773.0 76-77 255319.0 78-79 276939.0 80-81 289987.0 82-83 281010.0 84-85 274943.0 86-87 289617.0 88-89 312108.0 90-91 353102.0 92-93 384231.0 94-95 470130.0 96-97 1196351.0 98-99 2182817.0 100-101 2.2546026E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.14203643463048 #Duplication Level Percentage of deduplicated Percentage of total 1 86.21467406624988 67.36990202084691 2 8.884179752655777 13.884557958476682 3 2.428351338707996 5.692689563562118 4 1.0237158341639767 3.199809600477984 5 0.5073220398248436 1.982158866004199 6 0.2798940924828652 1.312289662358033 7 0.17680913655241698 0.9671358193318165 8 0.11748774697056745 0.7344585443517382 9 0.07633073594821366 0.5368175234592724 >10 0.28089711142270934 3.484052137776761 >50 0.007571530503765284 0.3999533064615134 >100 0.0026503306447526608 0.3475818136109482 >500 6.813493061515405E-5 0.035250698960698275 >1k 4.814894169999929E-5 0.05334248432129421 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.883976572594238E-6 2.941988286297119E-6 2 0.0 5.295578915334814E-5 0.0 2.059391800407983E-5 2.941988286297119E-6 3 2.941988286297119E-6 5.295578915334814E-5 0.0 2.647789457667407E-5 2.941988286297119E-6 4 2.941988286297119E-6 1.382734494559646E-4 0.0 3.530385943556542E-5 2.941988286297119E-6 5 2.941988286297119E-6 1.5004140260115305E-4 0.0 3.8245847721862546E-5 2.941988286297119E-6 6 5.883976572594238E-6 1.5004140260115305E-4 0.0 4.118783600815966E-5 1.1767953145188475E-5 7 5.883976572594238E-6 1.5298339088745018E-4 0.0 4.118783600815966E-5 1.1767953145188475E-5 8 5.883976572594238E-6 1.6475134403263865E-4 0.0 4.4129824294456785E-5 1.1767953145188475E-5 9 5.883976572594238E-6 2.941988286297119E-4 0.0 7.649169544372509E-5 1.1767953145188475E-5 10-11 5.883976572594238E-6 3.000828052023061E-4 0.0 9.41436251615078E-5 1.1767953145188475E-5 12-13 5.883976572594238E-6 3.074377759180489E-4 0.0 1.088535665929934E-4 1.3238947288337034E-5 14-15 8.825964858891356E-6 3.809874830754769E-4 0.0 1.2209251388133044E-4 2.6477894576674067E-5 16-17 1.4709941431485593E-5 3.9422643036381394E-4 0.0 1.4415742602855882E-4 3.530385943556542E-5 18-19 1.4709941431485593E-5 4.2658830151308223E-4 0.0 1.6475134403263865E-4 4.70718125807539E-5 20-21 1.4709941431485593E-5 4.618921609486476E-4 0.0 1.853452620367185E-4 4.70718125807539E-5 22-23 1.4709941431485593E-5 5.236739149608871E-4 0.0 1.9417122689560984E-4 5.44267832964967E-5 24-25 1.4709941431485593E-5 5.869266631162752E-4 0.0 2.3388806876062094E-4 6.766573058483373E-5 26-27 1.4709941431485593E-5 6.192885342655434E-4 0.0 2.824308754845234E-4 7.354970715742798E-5 28-29 1.6180935574634153E-5 6.237015166949893E-4 0.0 3.662775416439913E-4 7.796268958687366E-5 30-31 1.765192971778271E-5 6.987222179955658E-4 0.0 7.722719251529936E-4 8.384666615946789E-5 32-33 1.765192971778271E-5 7.090191769976057E-4 0.0 0.0016607523876147235 8.6788654445765E-5 34-35 1.765192971778271E-5 8.075757845885591E-4 0.0 0.0028654965908533935 9.41436251615078E-5 36-37 2.059391800407983E-5 9.164293511815524E-4 0.0 0.004767492017944481 9.708561344780492E-5 38-39 2.059391800407983E-5 9.649721579054549E-4 0.0 0.007946310361288518 9.855660759095348E-5 40-41 2.059391800407983E-5 0.0010488188240649228 0.0 0.011634092678161956 1.1473754316558763E-4 42-43 2.059391800407983E-5 0.001091477654216231 0.0 0.015060038037554952 1.1473754316558763E-4 44-45 2.059391800407983E-5 0.0011929762500934816 0.0 0.01885961590930768 1.1767953145188476E-4 46-47 2.059391800407983E-5 0.001262112974821464 0.0 0.02342411073549766 1.2797649045392467E-4 48-49 2.059391800407983E-5 0.001269467945537207 0.0 0.02814158895257509 1.5886736746004442E-4 50-51 2.059391800407983E-5 0.0014283353129972511 0.0 0.03306647734383647 1.6033836160319297E-4 52-53 2.2064912147228393E-5 0.0014415742602855882 0.0 0.03776189064876667 1.7651929717782714E-4 54-55 2.353590629037695E-5 0.0014489292310013312 0.0 0.042258719744371814 1.9711321518190697E-4 56-57 2.647789457667407E-5 0.001462168178289668 0.0 0.046914416207437006 2.0446818589764975E-4 58-59 2.647789457667407E-5 0.001472465137291708 0.0 0.05155981571150016 2.0741017418394688E-4 60-61 2.647789457667407E-5 0.0015136529732998677 0.0 0.05655972480406211 2.0888116832709543E-4 62-63 2.647789457667407E-5 0.00154160186201969 0.0 0.06126396407385121 2.206491214722839E-4 64-65 2.647789457667407E-5 0.0017166501650543687 0.0 0.06547836229397183 2.2359110975858103E-4 66-67 2.794888871982263E-5 0.0017357730889153002 0.0 0.06978396215096766 2.2947508633117526E-4 68-69 2.9419882862971187E-5 0.0017887288780686482 0.0 0.07425137136370984 2.324170746174724E-4 70-71 2.9419882862971187E-5 0.0018328587023631049 0.0 0.07804212327060367 2.353590629037695E-4 72-73 2.9419882862971187E-5 0.001853452620367185 0.0 0.08090909085560022 2.6330795162359216E-4 74-75 2.9419882862971187E-5 0.0019343572982403556 0.0 0.08312882101761139 2.647789457667407E-4 76-77 2.9419882862971187E-5 0.0020520368296922404 0.0 0.08527941445489459 2.647789457667407E-4 78-79 2.9419882862971187E-5 0.0021182315661339257 0.0 0.08676217655118834 2.647789457667407E-4 80-81 2.9419882862971187E-5 0.0021241155427065197 0.0 0.08728437947200607 2.7213391648248347E-4 82-83 2.9419882862971187E-5 0.002137354489994857 0.0 0.08769772882623081 2.8831485205711764E-4 84-85 2.9419882862971187E-5 0.0021579484079989365 0.0 0.08789190005312643 2.9125684034341475E-4 86-87 2.9419882862971187E-5 0.0022020782322933934 0.0 0.08798310169000163 2.9125684034341475E-4 88 2.9419882862971187E-5 0.002332996711033615 0.0 0.08799192765486052 2.941988286297119E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 44725 0.0 50.741974 1 GTATCAA 81295 0.0 37.110363 1 TCAACGC 102255 0.0 28.877262 4 ATCAACG 102990 0.0 28.692041 3 CAACGCA 104835 0.0 28.18299 5 TATCAAC 107785 0.0 27.615015 2 AACGCAG 108455 0.0 27.277967 6 ACGCAGA 125040 0.0 23.642696 7 CGCAGAG 126945 0.0 23.264202 8 GTACATG 103580 0.0 21.299978 1 TACATGG 104645 0.0 20.656034 2 ACATGGG 104820 0.0 20.055676 3 GCAGAGT 147680 0.0 19.834806 9 AGAGTAC 133505 0.0 18.959541 10-11 GAGTACT 88475 0.0 18.44121 12-13 CAGAGTA 143940 0.0 17.823948 10-11 CATGGGG 70120 0.0 17.573957 4 AGTACTT 95500 0.0 17.113926 12-13 GTGGTAT 20990 0.0 16.955153 1 GTACTTT 99370 0.0 16.40989 14-15 >>END_MODULE