##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139288_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3048353 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62348291027975 33.0 33.0 33.0 33.0 33.0 2 32.647442077738376 33.0 33.0 33.0 33.0 33.0 3 32.63273708786351 33.0 33.0 33.0 33.0 33.0 4 36.55651494429943 37.0 37.0 37.0 37.0 37.0 5 36.579609710555175 37.0 37.0 37.0 37.0 37.0 6 36.54210158731617 37.0 37.0 37.0 37.0 37.0 7 36.50792181876574 37.0 37.0 37.0 37.0 37.0 8 36.521799148589416 37.0 37.0 37.0 37.0 37.0 9 36.53202926301514 37.0 37.0 37.0 37.0 37.0 10-11 36.4753816241098 37.0 37.0 37.0 37.0 37.0 12-13 36.4427891061173 37.0 37.0 37.0 37.0 37.0 14-15 34.81921237468233 40.0 35.0 40.0 19.5 40.0 16-17 35.081106420417846 40.0 33.0 40.0 24.0 40.0 18-19 37.85520344920683 40.0 37.0 40.0 35.0 40.0 20-21 38.25934452823997 40.0 37.0 40.0 37.0 40.0 22-23 38.309020736268735 40.0 37.0 40.0 37.0 40.0 24-25 38.35282759602572 40.0 37.0 40.0 37.0 40.0 26-27 38.27840197165183 40.0 37.0 40.0 37.0 40.0 28-29 38.195525967023414 40.0 37.0 40.0 37.0 40.0 30-31 38.05553622651164 40.0 37.0 40.0 35.0 40.0 32-33 37.84115323398345 40.0 37.0 40.0 33.0 40.0 34-35 37.73942101910837 40.0 37.0 40.0 33.0 40.0 36-37 37.65828275562549 40.0 37.0 40.0 33.0 40.0 38-39 37.6687229310549 40.0 37.0 40.0 33.0 40.0 40-41 37.631240614364444 40.0 37.0 40.0 33.0 40.0 42-43 37.60813109987825 40.0 37.0 40.0 33.0 40.0 44-45 37.56014389541035 40.0 37.0 40.0 33.0 40.0 46-47 37.41209954259702 40.0 37.0 40.0 33.0 40.0 48-49 37.1938478738347 40.0 37.0 40.0 33.0 40.0 50-51 37.111373694945755 40.0 37.0 40.0 33.0 40.0 52-53 37.05890906954683 40.0 37.0 40.0 33.0 40.0 54-55 36.84039576649871 37.0 37.0 40.0 33.0 40.0 56-57 36.74820594509781 37.0 37.0 40.0 33.0 40.0 58-59 36.71929415103972 37.0 37.0 40.0 33.0 40.0 60-61 36.61531062228484 37.0 37.0 40.0 33.0 40.0 62-63 36.454685584650605 37.0 37.0 40.0 33.0 40.0 64-65 36.20140871620547 37.0 37.0 40.0 33.0 40.0 66-67 35.87733464514906 37.0 35.0 40.0 33.0 40.0 68-69 35.59730226971499 37.0 33.0 38.5 33.0 40.0 70-71 35.37346231066514 37.0 33.0 37.0 30.0 40.0 72-73 35.168439277261015 37.0 33.0 37.0 27.0 40.0 74-75 34.88004341661358 37.0 33.0 37.0 27.0 40.0 76-77 31.887999574546463 33.0 30.0 35.0 24.5 37.0 78-79 34.06873087726279 37.0 33.0 37.0 27.0 37.0 80-81 34.40912647289614 37.0 33.0 37.0 27.0 37.0 82-83 34.3925942220458 37.0 33.0 37.0 27.0 37.0 84-85 34.352671327146936 37.0 33.0 37.0 27.0 37.0 86-87 34.16395956633083 37.0 33.0 37.0 27.0 37.0 88-89 33.92962920232486 37.0 33.0 37.0 27.0 37.0 90-91 33.7754072926424 37.0 33.0 37.0 27.0 37.0 92-93 33.79949674365666 37.0 33.0 37.0 27.0 37.0 94-95 33.72779915428828 33.0 33.0 37.0 27.0 37.0 96-97 33.67692638987909 33.0 33.0 37.0 27.0 37.0 98-99 33.67566608164401 33.0 33.0 37.0 27.0 37.0 100 33.690071697027776 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 9.0 20 40.0 21 171.0 22 638.0 23 1863.0 24 3948.0 25 7693.0 26 13314.0 27 21099.0 28 31398.0 29 43787.0 30 59170.0 31 78073.0 32 103226.0 33 140102.0 34 194020.0 35 298540.0 36 519582.0 37 906366.0 38 605658.0 39 19654.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.44459512744961 20.598213717489706 14.80066869137387 23.15652246368682 2 14.4172985669273 21.32983635382478 42.00535044425745 22.247514634990463 3 17.481010062903398 27.10025997884084 31.509435509665146 23.90929444859062 4 12.122802655086149 18.828719124978925 38.91917497337894 30.129303246555995 5 12.76644742237604 38.05521019567963 35.66644250168124 13.511899880263092 6 28.718688419615447 38.59674388104003 18.87635716729657 13.808210532047962 7 25.236578572101067 33.76311732925944 23.104607635664244 17.895696462975252 8 24.22491752103513 36.40952999865829 21.557017838813287 17.808534641493292 9 25.266397953255414 16.888988906468512 21.402475369486407 36.44213777078967 10-11 23.718857363304053 27.19773595774505 28.879152119193545 20.204254559757352 12-13 24.856045215235902 24.909467505895808 29.05445990014936 21.180027378718936 14-15 22.41597497594184 25.820718049066148 27.091578126087974 24.67172884890404 16-17 21.206746725198823 29.434402774219393 27.596885924956855 21.761964575624937 18-19 21.104478385541306 27.93751248625077 30.087263515741125 20.8707456124668 20-21 22.007427699996505 27.07514915845809 30.103148283839122 20.814274857706284 22-23 21.6232435767683 27.30745234162148 29.969076746727417 21.100227334882803 24-25 21.45788521993996 27.490164485519863 30.143077846324356 20.90887244821582 26-27 21.455911693268565 27.662424032132567 30.082914064307193 20.798750210291676 28-29 21.08602979537323 27.53869605328948 30.13569165552304 21.239582495814254 30-31 21.582145210966857 27.31782260951822 30.123237331662768 20.976794847852158 32-33 21.382356558611846 27.60808714824265 30.001593128251773 21.007963164893727 34-35 21.255539111494322 27.796056415801946 30.096201896362025 20.852202576341703 36-37 21.455270036159348 27.710879981457087 29.752626110242 21.081223872141564 38-39 21.308054119640698 27.63917594684117 29.83999710622247 21.212772827295655 40-41 21.477686730574028 27.505189288343413 29.82012143202904 21.197002549053526 42-43 21.69648668841996 27.683172997775422 29.453851641416804 21.16648867238781 44-45 21.51943480346391 28.066187973039725 29.058135751173758 21.356241472322605 46-47 21.938620055692727 27.778286458018105 28.425862269048395 21.857231217240777 48-49 21.736071690476003 27.97573113106776 28.449598410908784 21.838598767547452 50-51 21.617819897615327 28.277429350812533 28.360628764672402 21.74412198689974 52-53 21.75993649452692 28.26292738774436 28.34475229200904 21.632383825719682 54-55 21.775101625744536 28.229452704924828 28.17790231629158 21.817543353039056 56-57 22.021242247008423 28.42199035903579 27.822657976629245 21.734109417326543 58-59 21.631147066543235 28.63481764162184 28.17150901298553 21.562526278849397 60-61 21.93464011830223 28.749619344116788 27.826060203779164 21.489680333801818 62-63 21.67980943728504 28.860148091128185 27.76923099873868 21.690811472848097 64-65 21.735589265935406 28.767957224519897 27.794995625441043 21.701457884103654 66-67 21.906608137668304 28.57150801660755 27.641604936164565 21.880278909559582 68-69 21.883609461918418 28.435404510105627 27.77406943152576 21.906916596450195 70-71 21.87311634848638 28.166684476182773 27.856188846205086 22.10401032912576 72-73 21.950858878562993 28.27653516817262 27.778263577562996 21.99434237570139 74-75 21.736469562973344 28.3264388644647 27.81812671164184 22.11896486092012 76-77 21.921434059565822 28.26340686817122 27.715721001705973 22.09943807055698 78-79 21.95256403764346 28.333417730169728 27.65058556995242 22.06343266223439 80-81 21.99188817199985 28.29559213584992 27.6077883917492 22.104731300401035 82-83 21.9507304954059 28.200896601652236 27.68428225623842 22.164090646703443 84-85 22.130626675918837 28.17546362802802 27.70427400576132 21.989635690291824 86-87 21.895229425910827 28.182200564518777 27.74856615009177 22.174003859478628 88-89 21.951998627967818 28.115862191578973 27.781047727953318 22.151091452499898 90-91 22.05492433110091 28.03950619765295 27.903107813877874 22.002461657368265 92-93 22.00886943339759 28.04007949081952 27.823392095307092 22.1276589804758 94-95 21.925530537610655 28.05920689274274 27.887482198617697 22.12778037102891 96-97 21.90797386692909 28.21069300280388 28.002403602083774 21.87892952818326 98-99 23.01597900920706 30.178929822498997 28.15318395280217 18.65190721549177 100 21.919318275480983 31.052208691225065 22.155934727501393 24.87253830579256 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 822.0 1 789.0 2 1222.0 3 1804.5 4 2634.5 5 4536.0 6 6066.0 7 6958.5 8 7482.5 9 7296.5 10 6750.0 11 6239.0 12 6857.0 13 9195.0 14 14512.0 15 21829.5 16 28190.0 17 32499.5 18 33122.0 19 30187.0 20 26194.5 21 22331.5 22 19794.0 23 19534.0 24 21155.0 25 24871.5 26 30742.0 27 37044.5 28 42917.0 29 49723.0 30 56260.0 31 62033.5 32 68806.5 33 75800.5 34 82658.5 35 89569.0 36 96855.0 37 102655.5 38 105670.0 39 107711.5 40 111046.0 41 113944.0 42 114904.0 43 116074.5 44 116839.5 45 117481.0 46 119566.0 47 121415.5 48 120767.0 49 118527.0 50 116318.0 51 113300.0 52 108049.0 53 101753.5 54 95457.0 55 88491.5 56 80688.0 57 72048.0 58 63574.0 59 55885.0 60 47422.0 61 38638.5 62 30498.0 63 23311.5 64 17688.5 65 13604.0 66 10585.5 67 8273.0 68 6371.5 69 4528.5 70 3187.0 71 2419.5 72 1808.5 73 1307.0 74 924.0 75 663.5 76 491.5 77 356.5 78 248.5 79 171.5 80 124.5 81 101.5 82 83.5 83 63.0 84 39.0 85 20.5 86 12.5 87 8.5 88 5.0 89 3.0 90 2.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 3.608505970273128E-4 2 2.6243679783804564E-4 3 9.185287924331598E-4 4 4.920689959463356E-4 5 9.841379918926711E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 8.130554433820492 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.00960150787988366 26-27 0.025885460123908573 28-29 0.009288919256439276 30-31 8.23426008832726E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.024513987531342075 50-51 0.07165164687243811 52-53 0.06270134891053752 54-55 0.039039698259303424 56-57 0.0048438375582160855 58-59 0.010009988148174031 60-61 0.038598754711359214 62-63 0.03951711575756175 64-65 0.0 66-67 0.0037776125258728106 68-69 0.03765077081979692 70-71 0.09814127271065133 72-73 0.08820079122582818 74-75 0.04132560984405358 76-77 0.01015260442787836 78-79 0.0010292191191037066 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0013475211321004655 92-93 0.0029080026604734743 94-95 0.0010452078526465968 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 386.0 22-23 869.0 24-25 2194.0 26-27 2620.0 28-29 4311.0 30-31 7440.0 32-33 7545.0 34-35 9203.0 36-37 10839.0 38-39 14833.0 40-41 21517.0 42-43 22874.0 44-45 35090.0 46-47 33104.0 48-49 24630.0 50-51 20847.0 52-53 16878.0 54-55 27867.0 56-57 28524.0 58-59 32597.0 60-61 33685.0 62-63 33031.0 64-65 37248.0 66-67 39566.0 68-69 29418.0 70-71 27413.0 72-73 27290.0 74-75 31596.0 76-77 26527.0 78-79 36732.0 80-81 39221.0 82-83 42485.0 84-85 43143.0 86-87 40181.0 88-89 37132.0 90-91 39989.0 92-93 42814.0 94-95 49923.0 96-97 106494.0 98-99 176732.0 100-101 1783477.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.44417150673873 #Duplication Level Percentage of deduplicated Percentage of total 1 93.65941289595168 85.64607416077862 2 4.8960968867729795 8.954390468553559 3 0.9193163588080582 2.521983683513839 4 0.2730485464875635 0.9987479245869793 5 0.11518286515580813 0.5266400837972638 6 0.04799405492427027 0.2633265953879285 7 0.026882503634275162 0.17207737910042295 8 0.017887909599805674 0.13085960586733347 9 0.012525245984264842 0.10308246677542844 >10 0.029763742701249662 0.41722906970520224 >50 0.00101723919121965 0.0668194680243948 >100 8.259309127267158E-4 0.17589190902952642 >500 4.581987601411715E-5 0.022877184879562282 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.2804599729755704E-5 0.0 0.0 0.0 0.0 2 3.2804599729755704E-5 3.2804599729755704E-5 0.0 6.560919945951141E-5 0.0 3 3.2804599729755704E-5 3.2804599729755704E-5 0.0 6.560919945951141E-5 0.0 4 3.2804599729755704E-5 1.6402299864877855E-4 0.0 9.841379918926713E-5 0.0 5 3.2804599729755704E-5 1.9682759837853425E-4 0.0 9.841379918926713E-5 0.0 6 6.560919945951141E-5 1.9682759837853425E-4 0.0 1.3121839891902282E-4 0.0 7 6.560919945951141E-5 1.9682759837853425E-4 0.0 1.3121839891902282E-4 0.0 8 6.560919945951141E-5 1.9682759837853425E-4 0.0 1.3121839891902282E-4 0.0 9 6.560919945951141E-5 2.2963219810828996E-4 0.0 1.6402299864877855E-4 0.0 10-11 6.560919945951141E-5 2.2963219810828996E-4 0.0 2.132298982434121E-4 0.0 12-13 6.560919945951141E-5 2.2963219810828996E-4 0.0 2.2963219810828996E-4 0.0 14-15 9.841379918926713E-5 4.264597964868242E-4 0.0 2.2963219810828996E-4 0.0 16-17 1.9682759837853425E-4 4.592643962165799E-4 0.0 2.460344979731678E-4 0.0 18-19 1.9682759837853425E-4 4.920689959463356E-4 0.0 2.7883909770292346E-4 0.0 20-21 1.9682759837853425E-4 5.248735956760913E-4 0.0 3.444482971624349E-4 0.0 22-23 2.2963219810828993E-4 5.412758955409692E-4 0.0 8.037126933790148E-4 0.0 24-25 2.6243679783804564E-4 5.740804952707249E-4 0.0 0.002001080583515098 0.0 26-27 2.6243679783804564E-4 5.904827951356027E-4 0.0 0.004264597964868242 0.0 28-29 2.6243679783804564E-4 5.904827951356027E-4 0.0 0.012580563996361314 0.0 30-31 2.6243679783804564E-4 6.888965943248698E-4 0.0 0.01572980557041786 0.0 32-33 2.6243679783804564E-4 6.888965943248698E-4 0.0 0.02179865652042267 0.0 34-35 2.9524139756780134E-4 7.709080936492592E-4 0.0 0.027457449973805528 0.0 36-37 2.9524139756780134E-4 8.529195929736484E-4 0.0 0.03474007111381129 0.0 38-39 2.9524139756780134E-4 8.857241927034041E-4 0.0 0.04997780768828282 0.0 40-41 2.9524139756780134E-4 0.0010825517910819384 0.0 0.06864362493451381 0.0 42-43 2.9524139756780134E-4 0.0011645632904063276 0.0 0.08463586730276973 1.6402299864877852E-5 44-45 2.9524139756780134E-4 0.001344988588919984 0.0 0.10112017866697197 3.2804599729755704E-5 46-47 2.9524139756780134E-4 0.0014434023881092512 0.0 0.1247230881725312 3.2804599729755704E-5 48-49 2.9524139756780134E-4 0.0014434023881092512 0.0 0.14601327339714265 3.2804599729755704E-5 50-51 3.280459972975571E-4 0.0017058391859472968 0.0 0.15988961908282934 3.2804599729755704E-5 52-53 3.280459972975571E-4 0.0017550460855419304 0.0 0.18734706905663484 6.560919945951141E-5 54-55 3.280459972975571E-4 0.0017714483854068082 0.0 0.21746169160855058 1.1481609905414497E-4 56-57 3.280459972975571E-4 0.0017714483854068082 0.0 0.2716712926619719 1.3121839891902282E-4 58-59 3.280459972975571E-4 0.0017714483854068082 0.0 0.3198448473651182 1.3121839891902282E-4 60-61 3.7725289689219063E-4 0.0017714483854068082 0.0 0.3401016876982423 1.3121839891902282E-4 62-63 4.592643962165799E-4 0.0017714483854068082 0.0 0.3609818154262318 1.3121839891902282E-4 64-65 4.592643962165799E-4 0.002099494382704365 0.0 0.369412597556779 1.3121839891902282E-4 66-67 4.592643962165799E-4 0.002132298982434121 0.0 0.3752026094090809 1.3121839891902282E-4 68-69 4.592643962165799E-4 0.0021487012822989987 0.0 0.3820095638530052 1.3121839891902282E-4 70-71 4.592643962165799E-4 0.002165103582163877 0.0 0.3870778745112525 1.3121839891902282E-4 72-73 4.592643962165799E-4 0.002165103582163877 0.0 0.3909816218790934 1.6402299864877855E-4 74-75 4.592643962165799E-4 0.0021815058820287545 0.0 0.3941636680528797 1.6402299864877855E-4 76-77 4.592643962165799E-4 0.002263517381353144 0.0 0.39747693262558503 1.6402299864877855E-4 78-79 4.592643962165799E-4 0.0022963219810828994 0.0 0.39949441550896503 1.6402299864877855E-4 80-81 4.592643962165799E-4 0.0022963219810828994 0.0 0.4003965420015333 1.6402299864877855E-4 82-83 4.592643962165799E-4 0.0022963219810828994 0.0 0.40129866849410156 1.9682759837853425E-4 84-85 4.920689959463356E-4 0.0022963219810828994 0.0 0.402315611085724 1.9682759837853425E-4 86-87 4.920689959463356E-4 0.0022963219810828994 0.0 0.40270926628248105 2.132298982434121E-4 88 4.920689959463356E-4 0.0023291265808126553 0.0 0.4027420708822108 2.2963219810828996E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5430 0.0 51.77116 1 GTATCAA 10600 0.0 39.140076 1 CTTATAC 3725 0.0 31.932917 1 TCAACGC 13540 0.0 30.246243 4 ATCAACG 13585 0.0 30.176352 3 TATCAAC 13660 0.0 30.07093 2 CAACGCA 13745 0.0 29.765192 5 AACGCAG 13795 0.0 29.687141 6 TATACAC 4875 0.0 27.270615 3 CGCAGAG 15080 0.0 27.158772 8 ACGCAGA 15635 0.0 26.193422 7 GCAGAGT 16070 0.0 24.590054 9 GAGTACT 10000 0.0 23.817993 12-13 TTATACA 5260 0.0 23.318335 2 GTACATG 9840 0.0 22.58737 1 AGAGTAC 14230 0.0 22.201887 10-11 TACATGG 9920 0.0 22.073286 2 CAGAGTA 15165 0.0 21.579382 10-11 AGTACTT 10560 0.0 21.250088 12-13 TACACAT 6260 0.0 21.03985 5 >>END_MODULE