##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139286_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7865509 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69411006967254 33.0 33.0 33.0 33.0 33.0 2 32.70913745060873 33.0 33.0 33.0 33.0 33.0 3 32.69436294586911 33.0 33.0 33.0 33.0 33.0 4 36.6289356480299 37.0 37.0 37.0 37.0 37.0 5 36.649348058720676 37.0 37.0 37.0 37.0 37.0 6 36.610360880649935 37.0 37.0 37.0 37.0 37.0 7 36.584666930010506 37.0 37.0 37.0 37.0 37.0 8 36.59032352515266 37.0 37.0 37.0 37.0 37.0 9 36.59992633661725 37.0 37.0 37.0 37.0 37.0 10-11 36.54985545118568 37.0 37.0 37.0 37.0 37.0 12-13 36.51426716312956 37.0 37.0 37.0 37.0 37.0 14-15 35.48246941170622 40.0 37.0 40.0 19.5 40.0 16-17 35.760332929502724 40.0 37.0 40.0 24.0 40.0 18-19 38.098308386653684 40.0 37.0 40.0 35.0 40.0 20-21 38.436808482732204 40.0 37.0 40.0 37.0 40.0 22-23 38.473783051645086 40.0 37.0 40.0 37.0 40.0 24-25 38.506617594048436 40.0 37.0 40.0 37.0 40.0 26-27 38.445463836249274 40.0 37.0 40.0 37.0 40.0 28-29 38.37372229285843 40.0 37.0 40.0 37.0 40.0 30-31 38.24150985794647 40.0 37.0 40.0 37.0 40.0 32-33 38.047872535114 40.0 37.0 40.0 35.0 40.0 34-35 37.96415179001375 40.0 37.0 40.0 33.0 40.0 36-37 37.89142107105704 40.0 37.0 40.0 33.0 40.0 38-39 37.89511430244852 40.0 37.0 40.0 33.0 40.0 40-41 37.83983061362899 40.0 37.0 40.0 33.0 40.0 42-43 37.78858294812456 40.0 37.0 40.0 33.0 40.0 44-45 37.73708651573217 40.0 37.0 40.0 33.0 40.0 46-47 37.5969304724512 40.0 37.0 40.0 33.0 40.0 48-49 37.37083050032547 40.0 37.0 40.0 33.0 40.0 50-51 37.289551696446736 40.0 37.0 40.0 33.0 40.0 52-53 37.215358598738945 40.0 37.0 40.0 33.0 40.0 54-55 36.99939548485507 37.0 37.0 40.0 33.0 40.0 56-57 36.90012812238254 37.0 37.0 40.0 33.0 40.0 58-59 36.85497161855767 37.0 37.0 40.0 33.0 40.0 60-61 36.74256216464214 37.0 37.0 40.0 33.0 40.0 62-63 36.56614412611325 37.0 37.0 40.0 33.0 40.0 64-65 36.300787454823976 37.0 37.0 40.0 33.0 40.0 66-67 35.974254432946545 37.0 35.0 40.0 33.0 40.0 68-69 35.689272742045915 37.0 33.0 38.5 33.0 40.0 70-71 35.45363663854076 37.0 33.0 37.0 33.0 40.0 72-73 35.2425283427625 37.0 33.0 37.0 33.0 40.0 74-75 34.96437489269164 37.0 33.0 37.0 27.0 40.0 76-77 32.06463302079275 33.0 30.0 35.0 24.5 37.0 78-79 34.21504366430915 37.0 33.0 37.0 27.0 37.0 80-81 34.547049922508606 37.0 33.0 37.0 27.0 37.0 82-83 34.523397421811765 37.0 33.0 37.0 27.0 37.0 84-85 34.48119542868098 37.0 33.0 37.0 30.0 37.0 86-87 34.30201488076685 37.0 33.0 37.0 27.0 37.0 88-89 34.07775448944794 37.0 33.0 37.0 27.0 37.0 90-91 33.92179759953072 37.0 33.0 37.0 27.0 37.0 92-93 33.94056337266061 37.0 33.0 37.0 27.0 37.0 94-95 33.87606735822244 37.0 33.0 37.0 27.0 37.0 96-97 33.81696193472443 33.0 33.0 37.0 27.0 37.0 98-99 33.81131828603344 33.0 33.0 37.0 27.0 37.0 100 33.85430378836153 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 1.0 19 9.0 20 55.0 21 283.0 22 1104.0 23 3286.0 24 7776.0 25 15877.0 26 28563.0 27 46928.0 28 70541.0 29 100930.0 30 138765.0 31 185690.0 32 251542.0 33 342263.0 34 485670.0 35 759675.0 36 1361933.0 37 2478137.0 38 1565298.0 39 21181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.21305957440262 20.14554938529725 14.768325864225698 22.873065176074427 2 14.730683265822977 21.18636417959026 41.43484297167616 22.6481095829106 3 18.124976240729755 26.510857557405892 30.696710165890877 24.667456035973473 4 12.525799475428679 18.362831464616864 38.85836447154461 30.253004588409848 5 13.320750116044708 37.701593909505846 35.23053770369168 13.747118270757763 6 29.405089994811522 38.03115602563038 18.749517672664286 13.814236306893807 7 26.036878223647065 33.36305380872363 22.80528825280093 17.794779714828373 8 24.658582171859443 36.08159370232747 21.10689848552713 18.152925640285964 9 25.652084308847655 17.02590385441044 21.329414282025486 35.99259755471642 10-11 24.11322013616665 27.06963401859943 28.44571788043215 20.371427964801768 12-13 25.232677249495232 24.692890186763503 28.79802820135353 21.276404362387737 14-15 22.60790715908481 25.618483145856196 26.98965301206961 24.783956682989388 16-17 21.426750640041224 29.115185043968545 27.467815496746617 21.99024881924361 18-19 21.392766825389174 27.766543779938463 29.952943922637427 20.887745472034933 20-21 22.307099084762793 26.89243310289183 29.982691299223106 20.817776513122276 22-23 22.011117092509068 26.84473868372948 29.860793788659784 21.283350435101667 24-25 21.735100811233657 27.04030776489763 29.966063910371528 21.258527513497185 26-27 21.702295516567613 27.178603237392302 29.870245108698146 21.24885613734194 28-29 21.53991883988264 27.20353616399347 29.897751193722204 21.358793802401685 30-31 21.93785573878597 27.056069934383604 29.77192172034993 21.234152606480496 32-33 21.704490400800953 27.25619794286412 29.667394344571697 21.37191731176323 34-35 21.753376237424874 27.31283347025811 29.632150662376 21.301639629941015 36-37 21.868615287863797 27.270668449705333 29.499992562122944 21.36072370030793 38-39 21.700591688059625 27.388627271231957 29.499313233564028 21.411467807144387 40-41 21.9790828972353 27.273670940381173 29.296516337146617 21.450729825236913 42-43 21.906958865958174 27.422761441511096 29.067207796285103 21.60307189624563 44-45 22.016746761638263 27.624548857694048 28.733075065745382 21.625629314922303 46-47 22.186190165958255 27.620218747242586 28.222612115467893 21.970978971331263 48-49 22.059092385439747 27.863912147041315 28.101726287425155 21.97526918009378 50-51 22.06449518057575 28.01572606291901 27.9680979198455 21.951680836659733 52-53 22.268437141944002 27.855543139274747 27.838474648550026 22.03754507023123 54-55 22.219190140313614 27.81592364895763 27.89386559518795 22.0710206155408 56-57 22.246891027325553 28.011356413635475 27.72634243682677 22.015410122212202 58-59 22.134304923474634 28.08956680997026 27.76329239051072 22.01283587604438 60-61 22.231211547934457 28.0506498328092 27.811780567264687 21.906358051991656 62-63 22.20439345856494 28.22781732716877 27.649447166852582 21.91834204741371 64-65 22.22180089743095 28.128094865825236 27.633848886309437 22.01625535043438 66-67 22.290724537998287 28.057136227536013 27.540447664004887 22.111691570460817 68-69 22.212046666455898 28.03914897101849 27.645489362834102 22.103314999691506 70-71 22.287368049054106 27.772002214958114 27.667306566804417 22.273323169183364 72-73 22.315199933530348 27.849650435819818 27.57092149891881 22.26422813173102 74-75 22.08568343650491 28.021482399903576 27.581770008958074 22.31106415463344 76-77 22.257278898616025 27.928775673414425 27.531786808563226 22.282158619406324 78-79 22.26975055130951 27.934116417475312 27.458306716525627 22.337826314689547 80-81 22.238605683185888 27.93195863257197 27.48629765603221 22.34313802820993 82-83 22.236394132278026 27.890166681679894 27.580451699534038 22.292987486508036 84-85 22.409841207344947 27.816478457083154 27.541045509590884 22.23263482598102 86-87 22.18795015345588 27.869158686995593 27.602502275963992 22.340388883584534 88-89 22.277213251649407 27.809185916121987 27.598936389177776 22.314664443050834 90-91 22.365576992637475 27.758757231905168 27.6252633915841 22.250402383873258 92-93 22.315831591877817 27.73326908533398 27.626901799813254 22.323997522974953 94-95 22.233497160047936 27.73256964750082 27.65622591211216 22.37770728033908 96-97 22.281427100490387 27.866479907473103 27.716699836007397 22.135393156029114 98-99 22.41885353534838 28.679472272781563 26.783913861176245 22.117760330693812 100 20.562601492322553 28.248850610153003 28.043090985083623 23.145456912440817 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1968.0 1 1835.0 2 2620.0 3 3824.0 4 5449.5 5 9179.5 6 12360.0 7 14592.0 8 16472.0 9 16775.5 10 15733.5 11 14396.0 12 15459.5 13 20677.0 14 33061.0 15 49853.5 16 64454.5 17 74160.0 18 74749.5 19 67402.0 20 57973.5 21 48795.0 22 41758.5 23 39935.5 24 42950.5 25 50258.5 26 61851.0 27 75375.5 28 90560.5 29 108063.0 30 124166.5 31 139562.0 32 157516.5 33 175549.5 34 191832.5 35 205466.0 36 222912.5 37 238780.0 38 247454.5 39 254529.0 40 262766.5 41 271487.5 42 276606.5 43 282029.5 44 287638.0 45 292476.5 46 295850.0 47 294529.0 48 292379.5 49 289435.5 50 284625.0 51 278687.5 52 268998.0 53 256827.0 54 243941.5 55 227193.5 56 207847.5 57 187316.0 58 167014.5 59 147696.5 60 126466.5 61 105045.5 62 83677.0 63 64392.0 64 48830.0 65 36882.0 66 28745.5 67 22929.5 68 18153.0 69 13280.0 70 9342.0 71 6967.5 72 5070.0 73 3631.5 74 2666.5 75 1921.0 76 1373.5 77 980.5 78 676.5 79 472.0 80 337.5 81 233.5 82 183.5 83 140.5 84 96.0 85 76.0 86 57.0 87 39.0 88 29.0 89 22.5 90 17.5 91 15.5 92 13.0 93 6.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 6.229730332773123E-4 3 0.0020087701889350074 4 4.958356795472486E-4 5 7.628241223803825E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.006050085251952 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.009031337532820484 26-27 0.024869802637624575 28-29 0.009323194656332016 30-31 9.562647228907399E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.027118525798876487 50-51 0.07140448869024782 52-53 0.0615515625307616 54-55 0.04063484502332782 56-57 0.005490960136773357 58-59 0.009713065106736245 60-61 0.03512129457934839 62-63 0.03540679424168686 64-65 0.0 66-67 0.0034707434304772754 68-69 0.0350500868177076 70-71 0.08949884217696626 72-73 0.08121144997721534 74-75 0.04065696565539948 76-77 0.0090831494510447 78-79 0.001141599182101266 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0018984885810887724 92-93 0.003899877912804023 94-95 0.001379830337964858 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 241.0 20-21 712.0 22-23 1644.0 24-25 4666.0 26-27 5272.0 28-29 7323.0 30-31 12196.0 32-33 13621.0 34-35 17559.0 36-37 18340.0 38-39 22005.0 40-41 29240.0 42-43 37874.0 44-45 50801.0 46-47 67176.0 48-49 40856.0 50-51 36235.0 52-53 35584.0 54-55 26602.0 56-57 29381.0 58-59 44875.0 60-61 30721.0 62-63 29329.0 64-65 49265.0 66-67 62443.0 68-69 34517.0 70-71 42118.0 72-73 35739.0 74-75 33141.0 76-77 24495.0 78-79 50170.0 80-81 64613.0 82-83 60939.0 84-85 88014.0 86-87 96125.0 88-89 102897.0 90-91 107642.0 92-93 114856.0 94-95 132525.0 96-97 308431.0 98-99 57446.0 100-101 5837880.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.20973978603132 #Duplication Level Percentage of deduplicated Percentage of total 1 90.00999887458146 77.59738581118638 2 7.201923088937348 12.417518309125994 3 1.6512447001112496 4.270601277589623 4 0.5503066504087268 1.897671725370354 5 0.24474385377860713 1.0549651974242111 6 0.12994809676100125 0.6721674964473562 7 0.0669439965626939 0.403985716673477 8 0.03495568001736809 0.24108160626728617 9 0.026529586521845703 0.20583978756113894 >10 0.08152414520530321 1.0418866079456441 >50 0.0013745612578514243 0.07687535931427864 >100 4.404628271967881E-4 0.07294070942573609 >500 4.4202190734254143E-5 0.024864509627423433 >1k 2.2100838668856078E-5 0.022215886041105342 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2713735373006375E-5 2 0.0 2.542747074601275E-5 0.0 0.0 1.2713735373006375E-5 3 0.0 2.542747074601275E-5 0.0 1.2713735373006375E-5 1.2713735373006375E-5 4 0.0 6.356867686503188E-5 0.0 1.2713735373006375E-5 1.2713735373006375E-5 5 0.0 6.356867686503188E-5 0.0 1.2713735373006375E-5 2.542747074601275E-5 6 0.0 6.356867686503188E-5 0.0 1.2713735373006375E-5 2.542747074601275E-5 7 0.0 6.356867686503188E-5 0.0 1.2713735373006375E-5 2.542747074601275E-5 8 0.0 6.356867686503188E-5 0.0 2.542747074601275E-5 5.08549414920255E-5 9 0.0 1.9070603059509562E-4 0.0 3.814120611901912E-5 5.08549414920255E-5 10-11 0.0 2.03419765968102E-4 0.0 1.01709882984051E-4 5.08549414920255E-5 12-13 0.0 2.03419765968102E-4 0.0 1.01709882984051E-4 5.08549414920255E-5 14-15 0.0 2.2884723671411474E-4 0.0 1.3349422141656695E-4 7.628241223803825E-5 16-17 0.0 2.4156097208712112E-4 0.0 1.7163542753558607E-4 8.899614761104463E-5 18-19 0.0 2.8605904589264344E-4 0.0 1.8434916290859242E-4 9.535301529754782E-5 20-21 0.0 3.1784338432515937E-4 0.0 1.9070603059509562E-4 1.2713735373006375E-4 22-23 0.0 3.559845904441785E-4 0.0 2.2249036902761158E-4 1.3349422141656695E-4 24-25 0.0 3.6869832581718485E-4 0.0 3.242002520116626E-4 1.525648244760765E-4 26-27 0.0 3.8141206119019123E-4 0.0 5.021925472337518E-4 1.7163542753558607E-4 28-29 0.0 3.8141206119019123E-4 0.0 0.001048883168273026 1.7799229522208926E-4 30-31 0.0 4.06839531936204E-4 0.0 0.0018689190998319371 1.9070603059509564E-4 32-33 0.0 4.06839531936204E-4 0.0 0.0033691398738466896 2.03419765968102E-4 34-35 0.0 5.276200179797646E-4 0.0 0.005161776561440588 2.2884723671411474E-4 36-37 0.0 6.484005040233252E-4 0.0 0.006948056381347984 2.542747074601275E-4 38-39 0.0 6.484005040233252E-4 0.0 0.008416492816930219 2.542747074601275E-4 40-41 0.0 7.373966516343697E-4 0.0 0.010266341313702649 2.606315751466307E-4 42-43 0.0 7.81894725439892E-4 0.0 0.012109832942788572 2.797021782061402E-4 44-45 0.0 9.026752114834526E-4 0.0 0.014887784121790466 2.924159135791466E-4 46-47 0.0 9.662438883484845E-4 0.0 0.019070603059509562 3.05129648952153E-4 48-49 0.0 9.662438883484845E-4 0.0 0.024658289755945865 3.3055711969816575E-4 50-51 0.0 0.0011124518451380578 0.0 0.028688543869188884 3.3055711969816575E-4 52-53 0.0 0.001118808712824561 0.0 0.032343742788928216 3.496277227576753E-4 54-55 0.0 0.0011315224481975674 0.0 0.036558346065079836 3.6869832581718485E-4 56-57 0.0 0.00115694991894358 0.0 0.03882774782916147 3.6869832581718485E-4 58-59 0.0 0.0011633067866300834 0.0 0.04200618167241306 3.75055193503688E-4 60-61 0.0 0.0012141617281221087 0.0 0.044936697675891035 3.8141206119019123E-4 62-63 0.0 0.0012523029342411279 0.0 0.046379706640727256 3.8776892887669445E-4 64-65 0.0 0.0014430089648362235 0.0 0.047581154633476355 3.941257965631976E-4 66-67 0.0 0.00145572270020923 0.0 0.05023832532643469 3.941257965631976E-4 68-69 0.0 0.0015320051124472682 0.0 0.05327690808058321 4.004826642497008E-4 70-71 0.0 0.0015510757155067778 0.0 0.054986905488252566 4.3226700268221677E-4 72-73 0.0 0.001557432583193281 0.0 0.05637270264391027 5.212631502932613E-4 74-75 0.0 0.0016019306569988031 0.0 0.05721816604621519 5.212631502932613E-4 76-77 0.0 0.001665499333863835 0.0 0.05804455884546061 5.212631502932613E-4 78-79 0.0 0.0016909268046098479 0.0 0.05857217886344037 5.212631502932613E-4 80-81 0.0 0.0016909268046098479 0.0 0.05898537526306308 5.466906210392741E-4 82-83 0.0 0.001697283672296351 0.0 0.059506638413356336 5.721180917852869E-4 84-85 0.0 0.0017163542753558607 0.0 0.06001518782827659 5.721180917852869E-4 86-87 0.0 0.001729068010728867 0.0 0.06026310566805022 5.721180917852869E-4 88 0.0 0.001792636687593899 0.0 0.06028853313879623 5.721180917852869E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14205 0.0 54.421234 1 GTATCAA 26365 0.0 39.687294 1 TCAACGC 33255 0.0 31.007635 4 ATCAACG 33335 0.0 30.894571 3 TATCAAC 33855 0.0 30.625065 2 CAACGCA 34080 0.0 30.154793 5 AACGCAG 34290 0.0 30.007881 6 CGCAGAG 38670 0.0 26.59914 8 ACGCAGA 39430 0.0 26.12913 7 GTGGTAT 6410 0.0 25.379038 1 TGGTATC 6465 0.0 24.29081 2 GCAGAGT 41340 0.0 23.951286 9 GAGTACT 25925 0.0 23.631989 12-13 CAGAGTA 39465 0.0 22.020206 10-11 GTACATG 25560 0.0 21.673647 1 TACATGG 25450 0.0 21.51164 2 AGAGTAC 36835 0.0 21.414038 10-11 GTACTTT 28770 0.0 21.278399 14-15 AGTACTT 27675 0.0 20.396173 12-13 ACATGGG 26645 0.0 19.79793 3 >>END_MODULE