##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139285_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8385725 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68449227705416 33.0 33.0 33.0 33.0 33.0 2 32.70081453899335 33.0 33.0 33.0 33.0 33.0 3 32.683596468999404 33.0 33.0 33.0 33.0 33.0 4 36.61547498874575 37.0 37.0 37.0 37.0 37.0 5 36.63774354632426 37.0 37.0 37.0 37.0 37.0 6 36.59724627268364 37.0 37.0 37.0 37.0 37.0 7 36.571880666251275 37.0 37.0 37.0 37.0 37.0 8 36.57751798443188 37.0 37.0 37.0 37.0 37.0 9 36.58880931583137 37.0 37.0 37.0 37.0 37.0 10-11 36.53464709372177 37.0 37.0 37.0 37.0 37.0 12-13 36.5015574085723 37.0 37.0 37.0 37.0 37.0 14-15 35.44872703314263 40.0 37.0 40.0 19.5 40.0 16-17 35.72181910329756 40.0 37.0 40.0 24.0 40.0 18-19 38.06433671507234 40.0 37.0 40.0 35.0 40.0 20-21 38.40109427722007 40.0 37.0 40.0 37.0 40.0 22-23 38.43751733932198 40.0 37.0 40.0 37.0 40.0 24-25 38.4716366380022 40.0 37.0 40.0 37.0 40.0 26-27 38.412169955243044 40.0 37.0 40.0 37.0 40.0 28-29 38.34102274264322 40.0 37.0 40.0 37.0 40.0 30-31 38.20870046465908 40.0 37.0 40.0 37.0 40.0 32-33 38.013803345111114 40.0 37.0 40.0 33.0 40.0 34-35 37.9278847806123 40.0 37.0 40.0 33.0 40.0 36-37 37.85846087476325 40.0 37.0 40.0 33.0 40.0 38-39 37.86574953249981 40.0 37.0 40.0 33.0 40.0 40-41 37.813413552128225 40.0 37.0 40.0 33.0 40.0 42-43 37.76366154420127 40.0 37.0 40.0 33.0 40.0 44-45 37.71344861183729 40.0 37.0 40.0 33.0 40.0 46-47 37.571599173495215 40.0 37.0 40.0 33.0 40.0 48-49 37.343508256267896 40.0 37.0 40.0 33.0 40.0 50-51 37.26026753997108 40.0 37.0 40.0 33.0 40.0 52-53 37.18722847418482 40.0 37.0 40.0 33.0 40.0 54-55 36.9710707014701 37.0 37.0 40.0 33.0 40.0 56-57 36.87346518333642 37.0 37.0 40.0 33.0 40.0 58-59 36.828170098741964 37.0 37.0 40.0 33.0 40.0 60-61 36.714878962076945 37.0 37.0 40.0 33.0 40.0 62-63 36.539534570441205 37.0 37.0 40.0 33.0 40.0 64-65 36.27546484228321 37.0 37.0 40.0 33.0 40.0 66-67 35.944291782117844 37.0 35.0 40.0 33.0 40.0 68-69 35.658356582634596 37.0 33.0 38.5 33.0 40.0 70-71 35.41937086556116 37.0 33.0 37.0 30.0 40.0 72-73 35.20615176230512 37.0 33.0 37.0 27.0 40.0 74-75 34.923828405159995 37.0 33.0 37.0 27.0 40.0 76-77 32.0300807305942 33.0 30.0 35.0 24.5 37.0 78-79 34.181777591460715 37.0 33.0 37.0 27.0 37.0 80-81 34.50626369156685 37.0 33.0 37.0 27.0 37.0 82-83 34.47860789398787 37.0 33.0 37.0 27.0 37.0 84-85 34.43576108978353 37.0 33.0 37.0 27.0 37.0 86-87 34.254509287316395 37.0 33.0 37.0 27.0 37.0 88-89 34.02727616126624 37.0 33.0 37.0 27.0 37.0 90-91 33.87200403184899 37.0 33.0 37.0 27.0 37.0 92-93 33.88864093555095 37.0 33.0 37.0 27.0 37.0 94-95 33.818527191184145 35.0 33.0 37.0 27.0 37.0 96-97 33.76299023094531 33.0 33.0 37.0 27.0 37.0 98-99 33.74228537090795 33.0 33.0 37.0 27.0 37.0 100 33.751555437450016 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 3.0 18 4.0 19 13.0 20 70.0 21 307.0 22 1218.0 23 3583.0 24 8733.0 25 17475.0 26 30876.0 27 50907.0 28 76314.0 29 108645.0 30 149277.0 31 201292.0 32 271100.0 33 370248.0 34 522949.0 35 815503.0 36 1452440.0 37 2605734.0 38 1668475.0 39 30558.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.274885597100024 20.083942762655628 14.68813508307104 22.953036557173306 2 14.74115748303238 21.20017009954353 41.49899387980316 22.559678537620933 3 18.154227613365094 26.458123598938464 30.694919365398277 24.69272942229816 4 12.456513689698575 18.37815276867662 38.91184798856623 30.253485553058574 5 13.288426822843316 37.84780265685061 35.2059775919009 13.657792928405177 6 29.375134529214826 38.06280315655474 18.819780042870473 13.74228227135996 7 26.129547534649657 33.39286704488879 22.690488896308906 17.787096524152652 8 24.731469252807596 36.14435245610845 21.061351284474508 18.062827006609446 9 25.72451398060394 17.01935133813713 21.167758303545607 36.08837637771332 10-11 24.063906221584897 27.120714070637895 28.497136502806853 20.31824320497035 12-13 25.193832375853013 24.750817609687893 28.819833705493565 21.235516308965533 14-15 22.586238649063134 25.689219216623442 26.95416431224153 24.770377822071893 16-17 21.456761341446327 29.173583679407567 27.438402761836333 21.931252217309773 18-19 21.40922818241714 27.925069090627225 29.802080321021734 20.863622405933892 20-21 22.353177303472567 26.948250501650623 29.87468096022119 20.82389123465562 22-23 22.020446741112785 26.943231763963176 29.74092469525551 21.295396799668524 24-25 21.743663469688205 27.134138684032006 29.847560308085452 21.27463753819434 26-27 21.706779267910825 27.31096969622798 29.72779707896246 21.254453956898743 28-29 21.517697366177188 27.365742939471765 29.76901374597192 21.34754594837912 30-31 21.94734787917864 27.162953915941994 29.61455199947578 21.275146205403587 32-33 21.730423293191063 27.374156863228823 29.5660220566723 21.329397786907816 34-35 21.753600858744175 27.463534652883943 29.56083831925156 21.222026169120323 36-37 21.79486894340264 27.411793227283248 29.45113067464538 21.34220715466873 38-39 21.66215062879615 27.476407262767594 29.47536420084691 21.386077907589343 40-41 21.946838178862542 27.35336987679058 29.274293486876417 21.425498457470464 42-43 21.937844821701475 27.471322907979445 29.011689472381345 21.57914279793773 44-45 21.95988675568319 27.72091599279834 28.66884805548937 21.650349196029097 46-47 22.154655709287653 27.62542748957554 28.24608539975334 21.973831401383464 48-49 22.04350168114261 27.826065320419787 28.19081474652016 21.93961825191744 50-51 22.0010775976044 28.013742480303666 28.072705485481986 21.912474436609948 52-53 22.232480761282993 27.943664878765723 27.908826796825455 21.91502756312583 54-55 22.17900260609957 27.89449938849753 27.8733527448356 22.0531452605673 56-57 22.20590790880195 28.02402203366884 27.762992317313927 22.007077740215287 58-59 22.140318332674937 28.144313710140505 27.82060667491989 21.894761282264668 60-61 22.230308104040446 28.12818693042528 27.766545493434812 21.87495947209946 62-63 22.18760564735038 28.23173034623333 27.659914966460963 21.92074903995532 64-65 22.188997183251917 28.175432084423964 27.64719727650785 21.98837345581627 66-67 22.27663436808675 28.064750373915576 27.54754204484875 22.111073213148924 68-69 22.197019337356817 28.063456090651556 27.66953565710063 22.069988914891 70-71 22.216918053231264 27.85149119478223 27.679082583533233 22.25250816845327 72-73 22.24384967617604 27.906861661810783 27.63193527386594 22.217353388147238 74-75 22.061333255320793 28.030363838134058 27.589340817895895 22.31896208864925 76-77 22.183972900922218 27.906195209354028 27.57641653733541 22.333415352388336 78-79 22.216583454074307 27.96378579284511 27.53467553678865 22.284955216291937 80-81 22.21756951359013 27.975947094456515 27.50941831051337 22.29706508143998 82-83 22.249640242342064 27.884590352623434 27.621834326474954 22.243935078559552 84-85 22.384345752633116 27.86601678942982 27.51511672487666 22.2345207330604 86-87 22.166675201859682 27.892906601146688 27.615151769345513 22.325266427648117 88-89 22.257152230938033 27.818412025774208 27.59603916904034 22.32839657424742 90-91 22.299329404964503 27.811958108950552 27.620191137339283 22.268521348745658 92-93 22.30192287863385 27.72634128201587 27.636303942651264 22.335431896699014 94-95 22.237121667820915 27.80795846832216 27.638530583265506 22.31638928059142 96-97 22.188534302537583 27.960537852678186 27.73249894297542 22.118428901808812 98-99 23.300449764584698 29.865686322234435 27.877093181174033 18.95677073200683 100 22.196937656495034 30.81280195109397 21.786247632022594 25.2040127603884 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2009.0 1 1812.0 2 2615.5 3 3940.0 4 5736.5 5 9608.5 6 12663.0 7 14671.5 8 16348.0 9 16521.5 10 15614.5 11 14778.0 12 16385.0 13 22095.0 14 35080.0 15 52343.5 16 67454.0 17 77130.5 18 77082.0 19 69350.0 20 59682.0 21 49931.0 22 42993.0 23 41807.0 24 45747.5 25 54820.0 26 68310.5 27 84339.5 28 100652.5 29 118102.5 30 135385.5 31 152269.0 32 170988.0 33 189488.5 34 207890.0 35 224610.0 36 242069.0 37 257680.0 38 266755.0 39 273760.5 40 283530.5 41 292452.5 42 296543.0 43 301394.0 44 307385.5 45 312339.5 46 316321.5 47 318312.0 48 318858.5 49 316220.0 50 311013.5 51 302514.0 52 290572.0 53 277397.5 54 263008.0 55 245446.0 56 224572.0 57 203081.0 58 180868.0 59 158306.0 60 134129.5 61 109689.0 62 86753.0 63 66870.0 64 50404.5 65 37883.5 66 29307.0 67 22715.5 68 17368.0 69 12362.5 70 8651.0 71 6447.0 72 4732.5 73 3421.5 74 2471.0 75 1748.0 76 1184.0 77 802.0 78 571.5 79 426.5 80 317.0 81 236.5 82 183.0 83 125.0 84 86.0 85 68.0 86 55.5 87 47.0 88 32.5 89 15.0 90 5.5 91 4.0 92 4.0 93 4.0 94 3.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 1.311753008833464E-4 2 5.604762855924801E-4 3 0.0014190782550107474 4 4.770010941212597E-4 5 8.347519147122044E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.016101768183431 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008596101009018807 26-27 0.02342060293250539 28-29 0.00891115962078835 30-31 1.3153327259684823E-4 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.02674975777948918 50-51 0.07111314263886337 52-53 0.06036953145377448 54-55 0.039780759356003184 56-57 0.005221963439310145 58-59 0.009219056342221537 60-61 0.03406536833802195 62-63 0.03512574921809054 64-65 0.0 66-67 0.0031545636466130053 68-69 0.03460640468020432 70-71 0.08744555689125436 72-73 0.07957826044046534 74-75 0.03958862890913453 76-77 0.008763373927296243 78-79 9.511084727664015E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0017277983946263713 92-93 0.0033723779761235637 94-95 0.001236407763639493 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 244.0 20-21 787.0 22-23 1733.0 24-25 4425.0 26-27 5375.0 28-29 7441.0 30-31 12287.0 32-33 13411.0 34-35 17605.0 36-37 20127.0 38-39 27934.0 40-41 31954.0 42-43 41024.0 44-45 58140.0 46-47 51427.0 48-49 40591.0 50-51 34742.0 52-53 31535.0 54-55 52679.0 56-57 49999.0 58-59 44179.0 60-61 49261.0 62-63 43274.0 64-65 50622.0 66-67 69260.0 68-69 37465.0 70-71 43899.0 72-73 57967.0 74-75 61493.0 76-77 48005.0 78-79 59062.0 80-81 75707.0 82-83 86130.0 84-85 92441.0 86-87 98448.0 88-89 107189.0 90-91 112520.0 92-93 120355.0 94-95 141556.0 96-97 325343.0 98-99 547288.0 100-101 5610801.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.16297406928591 #Duplication Level Percentage of deduplicated Percentage of total 1 90.28232916495152 77.78993986754453 2 6.924658802893516 11.932983937447329 3 1.6175190994141462 4.181107686581874 4 0.5581101947858338 1.9235373696454365 5 0.24610797794592482 1.0602697660999554 6 0.11987927227293252 0.619749277697853 7 0.07846642262018527 0.4732630236272858 8 0.04132486138736053 0.2848538368108784 9 0.03169317161911728 0.24577001319522873 >10 0.09760046410479635 1.2523034094094938 >50 0.0016558264619141627 0.09925189049096216 >100 5.698070700094815E-4 0.08248608119697091 >500 6.370117541107695E-5 0.03435907576452614 >1k 2.123329729618367E-5 0.020124764487701636 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1925027353031492E-5 0.0 1.1925027353031492E-5 0.0 3 0.0 1.1925027353031492E-5 0.0 1.1925027353031492E-5 0.0 4 0.0 3.577508205909447E-5 0.0 1.1925027353031492E-5 0.0 5 0.0 3.577508205909447E-5 0.0 2.3850054706062983E-5 0.0 6 0.0 3.577508205909447E-5 0.0 2.3850054706062983E-5 0.0 7 0.0 3.577508205909447E-5 0.0 3.577508205909447E-5 0.0 8 0.0 3.577508205909447E-5 0.0 3.577508205909447E-5 1.1925027353031492E-5 9 0.0 1.0732524617728341E-4 0.0 5.962513676515745E-5 1.1925027353031492E-5 10-11 0.0 1.0732524617728341E-4 0.0 6.55876504416732E-5 1.1925027353031492E-5 12-13 0.0 1.0732524617728341E-4 0.0 7.155016411818895E-5 1.1925027353031492E-5 14-15 0.0 1.7887541029547237E-4 0.0 7.155016411818895E-5 4.173759573561022E-5 16-17 0.0 1.7887541029547237E-4 0.0 7.155016411818895E-5 6.55876504416732E-5 18-19 0.0 1.8483792397198812E-4 0.0 9.540021882425193E-5 7.155016411818895E-5 20-21 0.0 1.9080043764850387E-4 0.0 1.192502735303149E-4 7.155016411818895E-5 22-23 0.0 2.2061300603108257E-4 0.0 1.3713781455986215E-4 7.751267779470469E-5 24-25 5.962513676515746E-6 2.504255744136613E-4 0.0 2.0272546500153533E-4 8.347519147122044E-5 26-27 1.1925027353031492E-5 2.623506017666928E-4 0.0 3.3390076588488176E-4 8.347519147122044E-5 28-29 1.1925027353031492E-5 2.6831311544320854E-4 0.0 9.063020788303934E-4 8.347519147122044E-5 30-31 1.1925027353031492E-5 3.1005071117881877E-4 0.0 0.0017649040482486606 8.347519147122044E-5 32-33 1.1925027353031492E-5 3.1005071117881877E-4 0.0 0.0032495699537010815 8.347519147122044E-5 34-35 1.7887541029547237E-5 3.816008752970077E-4 0.0 0.005103911707097479 9.540021882425193E-5 36-37 2.3850054706062983E-5 4.5315103941519664E-4 0.0 0.007363704390496946 9.540021882425193E-5 38-39 2.3850054706062983E-5 4.710385804447439E-4 0.0 0.011722301888029956 9.540021882425193E-5 40-41 2.3850054706062983E-5 5.902888539750589E-4 0.0 0.016879876218216076 9.540021882425193E-5 42-43 2.3850054706062983E-5 6.08176395004606E-4 0.0 0.019646482564119383 9.540021882425193E-5 44-45 2.9812568382578726E-5 7.03576613828858E-4 0.0 0.02271717710752499 9.540021882425193E-5 46-47 3.577508205909447E-5 7.870518053000784E-4 0.0 0.026396048045935205 9.540021882425193E-5 48-49 3.577508205909447E-5 7.870518053000784E-4 0.0 0.029049366631984715 9.540021882425193E-5 50-51 3.577508205909447E-5 8.943770514773618E-4 0.0 0.03167883516332815 9.540021882425193E-5 52-53 3.577508205909447E-5 9.063020788303933E-4 0.0 0.034630279433203445 1.0732524617728341E-4 54-55 4.173759573561022E-5 9.063020788303933E-4 0.0 0.03811238742028865 1.192502735303149E-4 56-57 4.7700109412125966E-5 9.063020788303933E-4 0.0 0.0467282196828539 1.192502735303149E-4 58-59 4.7700109412125966E-5 9.301521335364563E-4 0.0 0.052058706909658976 1.2521278720683065E-4 60-61 5.962513676515745E-5 9.718897292720664E-4 0.0 0.055290389322330505 1.311753008833464E-4 62-63 5.962513676515745E-5 0.0010017022976546452 0.0 0.05774694495705499 1.311753008833464E-4 64-65 5.962513676515745E-5 0.0010732524617728342 0.0 0.06037045097472192 1.311753008833464E-4 66-67 5.962513676515745E-5 0.0011149900575084444 0.0 0.06398373426269047 1.311753008833464E-4 68-69 7.155016411818895E-5 0.0011328775985379918 0.0 0.0675612424685999 1.3713781455986215E-4 70-71 7.155016411818895E-5 0.0011448026258910231 0.0 0.06955868455023269 1.431003282363779E-4 72-73 7.155016411818895E-5 0.0011448026258910231 0.0 0.07137725122156999 1.431003282363779E-4 74-75 7.155016411818895E-5 0.001174615194273602 0.0 0.0737324441237937 1.431003282363779E-4 76-77 7.155016411818895E-5 0.0012103902763326963 0.0 0.07633210008675456 1.431003282363779E-4 78-79 7.155016411818895E-5 0.001240202844715275 0.0 0.07776310336911835 1.431003282363779E-4 80-81 7.155016411818895E-5 0.001240202844715275 0.0 0.0781208541897093 1.431003282363779E-4 82-83 7.155016411818895E-5 0.001240202844715275 0.0 0.07878269320780254 1.431003282363779E-4 84-85 7.751267779470469E-5 0.0012461653583917907 0.0 0.07938490708913062 1.431003282363779E-4 86-87 8.347519147122044E-5 0.0012521278720683065 0.0 0.07980824556016325 1.431003282363779E-4 88 8.347519147122044E-5 0.0012759779267743695 0.0 0.07983805812854583 1.431003282363779E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14695 0.0 53.31953 1 GTATCAA 27350 0.0 39.757767 1 ATCAACG 34135 0.0 31.349907 3 TCAACGC 34290 0.0 31.22058 4 TATCAAC 34625 0.0 31.03091 2 CAACGCA 35045 0.0 30.572567 5 AACGCAG 35175 0.0 30.508589 6 CGCAGAG 39365 0.0 27.164022 8 TGGTATC 6210 0.0 26.997282 2 GTGGTAT 6535 0.0 26.512001 1 ACGCAGA 40420 0.0 26.496403 7 GCAGAGT 43485 0.0 24.055464 9 GAGTACT 26380 0.0 23.55063 12-13 CTTATAC 4950 0.0 23.072927 1 GTACATG 28910 0.0 22.16792 1 TACATGG 28470 0.0 22.132063 2 CAGAGTA 40975 0.0 22.036674 10-11 AGAGTAC 38150 0.0 21.724033 10-11 GTACTTT 29200 0.0 21.190834 14-15 ACATGGG 29915 0.0 20.688303 3 >>END_MODULE