##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139284_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8142902 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70292433827645 33.0 33.0 33.0 33.0 33.0 2 32.70892539293731 33.0 33.0 33.0 33.0 33.0 3 32.7040746652729 33.0 33.0 33.0 33.0 33.0 4 36.6373328574997 37.0 37.0 37.0 37.0 37.0 5 36.655225372969 37.0 37.0 37.0 37.0 37.0 6 36.61690218057395 37.0 37.0 37.0 37.0 37.0 7 36.59251333247041 37.0 37.0 37.0 37.0 37.0 8 36.58369141615606 37.0 37.0 37.0 37.0 37.0 9 36.59343290635206 37.0 37.0 37.0 37.0 37.0 10-11 36.553406144394216 37.0 37.0 37.0 37.0 37.0 12-13 36.5185422838197 37.0 37.0 37.0 37.0 37.0 14-15 35.440159110351566 40.0 37.0 40.0 19.5 40.0 16-17 35.745797628413065 40.0 37.0 40.0 24.0 40.0 18-19 38.124110789986176 40.0 37.0 40.0 35.0 40.0 20-21 38.46118802539998 40.0 37.0 40.0 37.0 40.0 22-23 38.50509013454885 40.0 37.0 40.0 37.0 40.0 24-25 38.536395737083794 40.0 37.0 40.0 37.0 40.0 26-27 38.47513699028897 40.0 37.0 40.0 37.0 40.0 28-29 38.41188170928519 40.0 37.0 40.0 37.0 40.0 30-31 38.275686091430536 40.0 37.0 40.0 37.0 40.0 32-33 38.09799258728227 40.0 37.0 40.0 35.0 40.0 34-35 38.022752704670374 40.0 37.0 40.0 33.0 40.0 36-37 37.95717418839576 40.0 37.0 40.0 33.0 40.0 38-39 37.959699564175324 40.0 37.0 40.0 33.0 40.0 40-41 37.90543403888302 40.0 37.0 40.0 33.0 40.0 42-43 37.854791018988955 40.0 37.0 40.0 33.0 40.0 44-45 37.803352250317545 40.0 37.0 40.0 33.0 40.0 46-47 37.66046618983507 40.0 37.0 40.0 33.0 40.0 48-49 37.43582230143424 40.0 37.0 40.0 33.0 40.0 50-51 37.34865932632634 40.0 37.0 40.0 33.0 40.0 52-53 37.269786458307095 40.0 37.0 40.0 33.0 40.0 54-55 37.05662484575376 37.0 37.0 40.0 33.0 40.0 56-57 36.95172543462647 37.0 37.0 40.0 33.0 40.0 58-59 36.89387542623862 37.0 37.0 40.0 33.0 40.0 60-61 36.77315694550653 37.0 37.0 40.0 33.0 40.0 62-63 36.58862159492759 37.0 37.0 40.0 33.0 40.0 64-65 36.3216925669528 37.0 37.0 40.0 33.0 40.0 66-67 35.995017887150816 37.0 37.0 40.0 33.0 40.0 68-69 35.71224458529235 37.0 33.0 37.0 33.0 40.0 70-71 35.47670743673549 37.0 33.0 37.0 33.0 40.0 72-73 35.269616834835816 37.0 33.0 37.0 33.0 40.0 74-75 34.99908664262825 37.0 33.0 37.0 30.0 40.0 76-77 32.13223834191693 33.0 30.0 35.0 24.5 37.0 78-79 34.252738918024235 37.0 33.0 37.0 27.0 37.0 80-81 34.58585804031992 37.0 33.0 37.0 27.0 37.0 82-83 34.565754693994734 37.0 33.0 37.0 33.0 37.0 84-85 34.53099281617909 37.0 33.0 37.0 33.0 37.0 86-87 34.35964621316198 37.0 33.0 37.0 27.0 37.0 88-89 34.13777522275997 37.0 33.0 37.0 27.0 37.0 90-91 33.98864902341107 37.0 33.0 37.0 27.0 37.0 92-93 34.00619724388221 37.0 33.0 37.0 27.0 37.0 94-95 33.94460544849432 37.0 33.0 37.0 27.0 37.0 96-97 33.889237587064585 35.0 33.0 37.0 27.0 37.0 98-99 33.871642047471674 33.0 33.0 37.0 27.0 37.0 100 33.91249722878863 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 8.0 19 9.0 20 68.0 21 331.0 22 1149.0 23 3451.0 24 8329.0 25 16715.0 26 30013.0 27 48861.0 28 73535.0 29 104317.0 30 143212.0 31 190695.0 32 254446.0 33 346366.0 34 485639.0 35 758543.0 36 1400235.0 37 2640201.0 38 1618898.0 39 17879.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.769752110488376 19.687231898406736 14.468208017240045 23.074807973864846 2 14.90891589796655 20.898875935344087 41.02959415114519 23.16261401554417 3 18.284517081389893 26.245360920963112 30.364789420812055 25.10533257683494 4 12.939563944952583 18.020413193331933 38.26760856213981 30.77241429957567 5 13.606886196181483 37.6750466879179 34.79382465630484 13.924242459595778 6 29.963101606773606 37.63223479786444 18.46453512519247 13.94012847016948 7 26.545695871078884 33.19793115525644 22.32995067360506 17.92642230005961 8 25.01328150578258 35.69238583492715 20.868346444547655 18.425986214742608 9 25.864255765327886 16.880394729053595 20.87765516519786 36.37769434042065 10-11 24.40434012345967 26.693174006023895 28.20391919244515 20.69856667807128 12-13 25.62329130327247 24.32132917723927 28.525941979898565 21.529437539589694 14-15 22.86595543098357 25.34800269062783 26.62764585683287 25.158396021555728 16-17 21.938499321249353 28.682077961886314 27.036276501915413 22.343146214948924 18-19 21.88581540094674 27.455770682245717 29.372169774362998 21.28624414244455 20-21 22.689019074887952 26.49872803786731 29.553310036747753 21.258942850496982 22-23 22.422164109839894 26.44057987071063 29.5727282346893 21.564527784760177 24-25 22.12586215963955 26.661873682461806 29.468693891734425 21.74357026616422 26-27 22.174441581609017 26.752575091741516 29.332342362874343 21.740640963775128 28-29 21.976754893467874 26.819299859069307 29.553186773859537 21.650758473603283 30-31 22.40066198049106 26.762928205853814 29.202882193801084 21.633527619854046 32-33 22.075563132898445 27.08969830033298 29.117957782629507 21.716780784139065 34-35 22.22123602247152 27.071664932890442 29.078540248129503 21.628558796508532 36-37 22.2696002180523 27.017828945600485 28.95937116530799 21.75319967103923 38-39 22.128295480470616 27.05040471965158 29.05822314417389 21.763076655703912 40-41 22.432959688990604 26.905794560014673 28.843727883474653 21.81751786752007 42-43 22.315819120117876 27.083776914970457 28.574586403699904 22.025817561211763 44-45 22.43550802853916 27.276566184233552 28.2717266086447 22.01619917858259 46-47 22.58617094809841 27.29059862540958 27.795366980766094 22.327863445725917 48-49 22.500838323520654 27.462665462894016 27.686279805743975 22.35021640784136 50-51 22.50539152614216 27.61353647761109 27.580467260071508 22.30060473617525 52-53 22.713507182469172 27.5236522930278 27.38232645954061 22.380514064962416 54-55 22.62671878672407 27.47353141392062 27.453651316559448 22.446098482795858 56-57 22.647617978203005 27.66822771090513 27.338127275558165 22.346027035333698 58-59 22.57645755707144 27.70165625362977 27.35270743481403 22.369178754484764 60-61 22.678400486843895 27.63123261880039 27.385429652387362 22.304937241968357 62-63 22.589667514627354 27.778208056828426 27.307388764874513 22.324735663669713 64-65 22.658284144578904 27.73450610587817 27.227760065550306 22.37944968399262 66-67 22.700453020971324 27.674336561472295 27.11069457233957 22.514515845216813 68-69 22.637360906901097 27.64590343208239 27.261943027159685 22.454792633856822 70-71 22.669544062310894 27.420600214440714 27.24130967854186 22.66854604470653 72-73 22.688471738686946 27.48916602288195 27.17590873975379 22.646453498677317 74-75 22.491270232830786 27.66061073225788 27.203188757021735 22.644930277889603 76-77 22.748012079485626 27.53661804248077 27.08654423548123 22.628825642552375 78-79 22.636154936630298 27.536490271702245 27.079731189416844 22.747623602250613 80-81 22.646017496661457 27.52981299038848 27.13527935689645 22.688890156053613 82-83 22.67644612877472 27.504091285851445 27.20822416996387 22.611238415409964 84-85 22.776471808177412 27.488172453235666 27.152272481834995 22.58308325675193 86-87 22.61648940186356 27.508063296067164 27.200758459268393 22.674688842800883 88-89 22.62708181775955 27.4532591531765 27.1815602089228 22.738098820141143 90-91 22.704444560324504 27.414949615527785 27.226588348440036 22.65401747570768 92-93 22.729921621744396 27.3523328727884 27.217354337039488 22.700391168427718 94-95 22.634255330765633 27.399254398259306 27.239768553197564 22.726721717777497 96-97 22.664638932616132 27.48966657102076 27.319744680486586 22.52594981587653 98-99 22.864396939199054 28.31007969588561 26.332625434139846 22.492897930775495 100 20.94536331225494 27.917940564605313 27.561759345426985 23.574936777712757 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1770.0 1 1634.0 2 2388.0 3 3537.0 4 5110.5 5 8713.0 6 11638.5 7 13626.0 8 15306.5 9 15564.0 10 14567.0 11 13516.0 12 14883.0 13 20033.0 14 32171.5 15 48752.0 16 63193.5 17 72330.0 18 72377.5 19 64729.5 20 54671.5 21 44785.0 22 37514.5 23 35333.5 24 38005.0 25 45196.0 26 56105.5 27 68463.0 28 82337.5 29 98282.0 30 114104.5 31 129152.0 32 145465.0 33 162701.0 34 178563.0 35 192992.0 36 209904.0 37 225913.0 38 236900.0 39 247100.0 40 261055.0 41 273742.0 42 279108.5 43 283178.0 44 288093.0 45 293765.5 46 299742.0 47 303663.5 48 306797.5 49 307512.5 50 304775.0 51 300491.0 52 293957.0 53 284371.0 54 272866.0 55 257821.5 56 238849.5 57 216419.0 58 193536.0 59 170552.0 60 144039.0 61 118380.0 62 95018.5 63 73963.0 64 55925.0 65 41570.5 66 31606.0 67 24354.5 68 18638.0 69 13531.5 70 9628.0 71 7120.0 72 5178.5 73 3651.0 74 2611.5 75 1823.5 76 1237.0 77 824.0 78 556.5 79 396.5 80 291.5 81 209.0 82 157.0 83 113.5 84 82.5 85 63.5 86 50.0 87 38.0 88 28.0 89 18.0 90 9.5 91 5.0 92 3.5 93 2.5 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 5.280672664364621E-4 3 0.0014982373605871716 4 3.806996571983796E-4 5 3.684190230952061E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.218409358236166 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008889290248227441 26-27 0.024671854804106146 28-29 0.0091152830513736 30-31 1.1083075036112353E-4 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.027376573629075685 50-51 0.07071871655981742 52-53 0.06004228086501547 54-55 0.04040439523921735 56-57 0.0057877415248653915 58-59 0.009321056926465775 60-61 0.03490510733320505 62-63 0.035646935934733386 64-65 0.0 66-67 0.0036480138569313383 68-69 0.034982271085549015 70-71 0.08696474750142542 72-73 0.0787973084603848 74-75 0.03983686049232308 76-77 0.009540216909288404 78-79 0.001349514212181746 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0017766889739837845 92-93 0.003302252774827969 94-95 0.0011352771618608718 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 214.0 20-21 813.0 22-23 1765.0 24-25 4144.0 26-27 5073.0 28-29 7683.0 30-31 11533.0 32-33 12606.0 34-35 17589.0 36-37 25938.0 38-39 23651.0 40-41 27937.0 42-43 34261.0 44-45 44429.0 46-47 43417.0 48-49 30315.0 50-51 26275.0 52-53 19642.0 54-55 23456.0 56-57 30286.0 58-59 37062.0 60-61 20768.0 62-63 34738.0 64-65 31026.0 66-67 59348.0 68-69 32876.0 70-71 44601.0 72-73 45250.0 74-75 35280.0 76-77 23205.0 78-79 53843.0 80-81 45987.0 82-83 53955.0 84-85 85591.0 86-87 94010.0 88-89 103434.0 90-91 109432.0 92-93 115300.0 94-95 135783.0 96-97 325191.0 98-99 58523.0 100-101 6206672.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.44337386711729 #Duplication Level Percentage of deduplicated Percentage of total 1 89.04607770647468 75.19351231168218 2 7.674147503710152 12.960618135344024 3 1.8452016473000277 4.674451576895308 4 0.6783626098023848 2.2913290990806474 5 0.31480560647856215 1.329162376166691 6 0.14885377230529673 0.7541828847784151 7 0.085910389191392 0.5078194179490787 8 0.05497193568085584 0.37136125735181075 9 0.03718884979158949 0.2826316751975333 >10 0.11191067607051224 1.4194187185445202 >50 0.002068788698631831 0.11523550543100992 >100 4.531610570494268E-4 0.0641089486368402 >500 2.36767327041237E-5 0.01345557968004759 >1k 2.367670623031216E-5 0.022712513261843037 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2280634103173536E-5 0.0 0.0 0.0 3 0.0 3.6841902309520614E-5 0.0 0.0 0.0 4 0.0 4.9122536412694145E-5 0.0 0.0 1.2280634103173536E-5 5 1.2280634103173536E-5 6.140317051586768E-5 0.0 1.2280634103173536E-5 1.2280634103173536E-5 6 3.6841902309520614E-5 6.140317051586768E-5 0.0 1.2280634103173536E-5 2.4561268206347072E-5 7 3.6841902309520614E-5 7.368380461904123E-5 0.0 2.4561268206347072E-5 2.4561268206347072E-5 8 4.9122536412694145E-5 1.1052570692856183E-4 0.0 2.4561268206347072E-5 2.4561268206347072E-5 9 4.9122536412694145E-5 1.350869751349089E-4 0.0 2.4561268206347072E-5 2.4561268206347072E-5 10-11 6.140317051586768E-5 1.350869751349089E-4 0.0 9.210475577380153E-5 2.4561268206347072E-5 12-13 6.140317051586768E-5 1.350869751349089E-4 0.0 1.4736760923808246E-4 3.6841902309520614E-5 14-15 6.754348756745446E-5 1.5964824334125597E-4 0.0 1.6578856039284275E-4 3.6841902309520614E-5 16-17 8.596443872221476E-5 1.5964824334125597E-4 0.0 2.149110968055369E-4 4.298221936110738E-5 18-19 9.824507282538829E-5 1.8420951154760306E-4 0.0 2.763142673214046E-4 4.9122536412694145E-5 20-21 1.2280634103173537E-4 2.0877077975395012E-4 0.0 3.1929648668251195E-4 4.9122536412694145E-5 22-23 1.2894665808332214E-4 2.578933161666443E-4 0.0 3.9912060835314E-4 6.754348756745446E-5 24-25 1.5964824334125597E-4 3.131561696309252E-4 0.0 4.543834618174209E-4 9.210475577380153E-5 26-27 1.7192887744442952E-4 3.315771207856855E-4 0.0 5.771898028491562E-4 9.824507282538829E-5 28-29 1.7192887744442952E-4 3.315771207856855E-4 0.0 0.001160519922749899 9.824507282538829E-5 30-31 2.149110968055369E-4 3.9298029130155316E-4 0.0 0.0021613916021585426 1.0438538987697506E-4 32-33 2.2105141385712367E-4 3.9912060835313993E-4 0.0 0.0034017356465790697 1.2280634103173537E-4 34-35 2.3947236501188396E-4 4.605237788690076E-4 0.0 0.004783306983186093 1.350869751349089E-4 36-37 2.578933161666443E-4 5.157866323332886E-4 0.0 0.0065148763917335616 1.350869751349089E-4 38-39 2.578933161666443E-4 5.403479005396356E-4 0.0 0.00909994987045159 1.4122729218649568E-4 40-41 2.578933161666443E-4 6.140317051586768E-4 0.0 0.011218359253249027 1.4736760923808246E-4 42-43 2.578933161666443E-4 6.201720222102636E-4 0.0 0.012544667736391768 1.4736760923808246E-4 44-45 2.701739502698178E-4 6.877155097777181E-4 0.0 0.01339817180656233 1.535079262896692E-4 46-47 2.8245458437299137E-4 7.368380461904122E-4 0.0 0.014245535559681301 1.5964824334125597E-4 48-49 2.9473521847616486E-4 7.368380461904122E-4 0.0 0.01520342501972884 1.7192887744442952E-4 50-51 3.070158525793384E-4 8.22802484912627E-4 0.0 0.01627184018670494 1.7192887744442952E-4 52-53 3.070158525793384E-4 8.22802484912627E-4 0.0 0.0182367416432127 1.9034982859918983E-4 54-55 3.070158525793384E-4 8.412234360673873E-4 0.0 0.01959375171161338 2.0877077975395012E-4 56-57 3.070158525793384E-4 8.596443872221476E-4 0.0 0.021527951582863213 2.0877077975395012E-4 58-59 3.070158525793384E-4 8.596443872221476E-4 0.0 0.023726185087331274 2.0877077975395012E-4 60-61 3.1929648668251195E-4 8.842056554284947E-4 0.0 0.025261264350227963 2.0877077975395012E-4 62-63 3.1929648668251195E-4 9.02626606583255E-4 0.0 0.02614547000565646 2.0877077975395012E-4 64-65 3.1929648668251195E-4 0.001031573264666577 0.0 0.02718318358737462 2.0877077975395012E-4 66-67 3.315771207856855E-4 0.001031573264666577 0.0 0.029381417091842686 2.0877077975395012E-4 68-69 3.315771207856855E-4 0.0010499942158213374 0.0 0.03178228105901311 2.0877077975395012E-4 70-71 3.315771207856855E-4 0.0010745554840276845 0.0 0.03340332476063202 2.0877077975395012E-4 72-73 3.315771207856855E-4 0.001086836118130858 0.0 0.03499366687699299 2.578933161666443E-4 74-75 3.3771743783727226E-4 0.0011236780204403787 0.0 0.0359208547517826 2.578933161666443E-4 76-77 3.4385775488885903E-4 0.0011789408739046596 0.0 0.03668225406617935 2.578933161666443E-4 78-79 3.561383889920326E-4 0.0011912215080078332 0.0 0.03713049721094519 2.578933161666443E-4 80-81 3.561383889920326E-4 0.0011973618250594197 0.0 0.03736996957595708 2.763142673214046E-4 82-83 3.6227870604361935E-4 0.0012035021421110065 0.0 0.03776294986725863 3.3771743783727226E-4 84-85 3.684190230952061E-4 0.0012035021421110065 0.0 0.038119088256250655 3.499980719404458E-4 86-87 3.684190230952061E-4 0.0012035021421110065 0.0 0.038303297767798256 3.561383889920326E-4 88 3.684190230952061E-4 0.001326308483142742 0.0 0.03831557840190143 3.684190230952061E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14570 0.0 53.119602 1 CTCGTAT 3575 0.0 41.63957 9 GTATCAA 26890 0.0 39.949917 1 AATCTCG 3680 0.0 39.492233 6 TCTCGTA 3990 0.0 35.65638 8 TCAACGC 33430 0.0 31.64932 4 ATCAACG 33550 0.0 31.510023 3 TATCAAC 34290 0.0 31.047611 2 CAACGCA 34320 0.0 30.777369 5 AACGCAG 34970 0.0 30.230333 6 ATCTCGT 4720 0.0 29.955872 7 CGCAGAG 38750 0.0 27.281748 8 ACGCAGA 39625 0.0 26.678986 7 GTGGTAT 6685 0.0 25.669462 1 GAGTACT 25015 0.0 24.621544 12-13 GCAGAGT 41795 0.0 24.381155 9 TGGTATC 6955 0.0 23.16236 2 GTACATG 25945 0.0 22.541607 1 CAGAGTA 39000 0.0 22.436121 10-11 AGAGTAC 36020 0.0 22.346645 10-11 >>END_MODULE