##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139283_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7954675 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67575633196831 33.0 33.0 33.0 33.0 33.0 2 32.68931829395921 33.0 33.0 33.0 33.0 33.0 3 32.67532991605565 33.0 33.0 33.0 33.0 33.0 4 36.60617825366844 37.0 37.0 37.0 37.0 37.0 5 36.62559513745062 37.0 37.0 37.0 37.0 37.0 6 36.58665024026752 37.0 37.0 37.0 37.0 37.0 7 36.55748701235437 37.0 37.0 37.0 37.0 37.0 8 36.56324224434059 37.0 37.0 37.0 37.0 37.0 9 36.575864884486165 37.0 37.0 37.0 37.0 37.0 10-11 36.51942838645199 37.0 37.0 37.0 37.0 37.0 12-13 36.48482678424951 37.0 37.0 37.0 37.0 37.0 14-15 35.19644473218579 40.0 35.0 40.0 19.5 40.0 16-17 35.48547307086713 40.0 33.0 40.0 24.0 40.0 18-19 37.989010550399605 40.0 37.0 40.0 35.0 40.0 20-21 38.3484400438996 40.0 37.0 40.0 37.0 40.0 22-23 38.393614462956194 40.0 37.0 40.0 37.0 40.0 24-25 38.42610330717165 40.0 37.0 40.0 37.0 40.0 26-27 38.35978157487735 40.0 37.0 40.0 37.0 40.0 28-29 38.28618955051261 40.0 37.0 40.0 37.0 40.0 30-31 38.15247642383263 40.0 37.0 40.0 37.0 40.0 32-33 37.95300506845393 40.0 37.0 40.0 33.0 40.0 34-35 37.863282668473744 40.0 37.0 40.0 33.0 40.0 36-37 37.78651510576911 40.0 37.0 40.0 33.0 40.0 38-39 37.787608081534245 40.0 37.0 40.0 33.0 40.0 40-41 37.725460239900386 40.0 37.0 40.0 33.0 40.0 42-43 37.67410803720533 40.0 37.0 40.0 33.0 40.0 44-45 37.61088463190434 40.0 37.0 40.0 33.0 40.0 46-47 37.451834295895566 40.0 37.0 40.0 33.0 40.0 48-49 37.20969405566561 40.0 37.0 40.0 33.0 40.0 50-51 37.113807925595864 38.5 37.0 40.0 33.0 40.0 52-53 37.023839218234855 37.0 37.0 40.0 33.0 40.0 54-55 36.790398274055576 37.0 37.0 40.0 33.0 40.0 56-57 36.67772985727609 37.0 37.0 40.0 33.0 40.0 58-59 36.61383160197242 37.0 37.0 40.0 33.0 40.0 60-61 36.483296248066566 37.0 37.0 40.0 33.0 40.0 62-63 36.287989490451835 37.0 37.0 40.0 33.0 40.0 64-65 36.0041827482473 37.0 35.0 40.0 33.0 40.0 66-67 35.666477480227044 37.0 33.0 38.5 33.0 40.0 68-69 35.36812592639275 37.0 33.0 37.0 27.0 40.0 70-71 35.131437774926766 37.0 33.0 37.0 27.0 40.0 72-73 34.92627936460457 37.0 33.0 37.0 27.0 40.0 74-75 34.644831743710704 37.0 33.0 37.0 27.0 38.5 76-77 31.70309684018697 33.0 30.0 35.0 24.5 37.0 78-79 33.910426550251245 37.0 33.0 37.0 27.0 37.0 80-81 34.27227855345537 37.0 33.0 37.0 27.0 37.0 82-83 34.267385189623 37.0 33.0 37.0 27.0 37.0 84-85 34.24094911323762 37.0 33.0 37.0 27.0 37.0 86-87 34.06185335246546 37.0 33.0 37.0 27.0 37.0 88-89 33.83715044110701 37.0 33.0 37.0 27.0 37.0 90-91 33.68734402143366 37.0 33.0 37.0 27.0 37.0 92-93 33.71219137573077 33.0 33.0 37.0 27.0 37.0 94-95 33.652024622662736 33.0 33.0 37.0 27.0 37.0 96-97 33.60120036193854 33.0 33.0 37.0 27.0 37.0 98-99 33.60880410017009 33.0 33.0 37.0 27.0 37.0 100 33.65885248029338 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 7.0 20 61.0 21 316.0 22 1304.0 23 3913.0 24 8991.0 25 18156.0 26 32724.0 27 53594.0 28 79352.0 29 113521.0 30 153882.0 31 207048.0 32 276152.0 33 375606.0 34 530306.0 35 830026.0 36 1463854.0 37 2431937.0 38 1351119.0 39 22805.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.710657569291016 19.63997272044427 14.550412179001656 23.09895753126306 2 15.106722831902552 20.843235330796276 40.86399306868558 23.18604876861559 3 18.4153098272856 25.972003288169816 30.296268425084072 25.31641845946051 4 13.01001188865421 17.903015886445186 37.818428809438714 31.268543415461885 5 13.880453590269259 37.419650952120186 34.596805297216676 14.103090160393872 6 30.398413511551382 37.10587798998702 18.324909565758503 14.170798932703097 7 26.92746089563684 32.94779485019815 22.09293277223771 18.031811481927296 8 25.426846477071656 35.55802091223086 20.552040152488946 18.46309245820854 9 26.08559117751511 16.8394434719206 20.687608230380246 36.38735712018404 10-11 24.83012819505511 26.580300263681423 27.803536913827404 20.786034627436067 12-13 25.864255924974938 24.18624268119062 28.18602897038534 21.763472423449105 14-15 23.244796872884717 25.047662765138686 26.231815343646854 25.475725018329744 16-17 22.209662871204667 28.550368179718216 26.66046695810954 22.579501990967575 18-19 22.210963992872117 27.267047365228624 29.04327329526348 21.47871534663578 20-21 23.141190279635875 26.309203818995545 29.083015009321073 21.466590892047506 22-23 22.913791959926307 26.232696358357284 28.968657536967925 21.884854144748484 24-25 22.583321357468712 26.51993533347568 28.97895507777184 21.917788231283765 26-27 22.508256948638618 26.61928461681187 28.968534096118713 21.903924338430794 28-29 22.346481718290853 26.62919821347446 28.96179268197606 22.062527386258626 30-31 22.76027478992958 26.44858430386175 28.847458355787765 21.943682550420903 32-33 22.53272557815809 26.758226015879703 28.72354745305115 21.985500952911057 34-35 22.568017493126234 26.698241991408384 28.813493613206486 21.920246902258896 36-37 22.656702124389454 26.64113102181558 28.705873927181262 21.9962929266137 38-39 22.53857554152653 26.709355632253345 28.684803049319534 22.067265776900584 40-41 22.745397216074117 26.615558502850778 28.537199802889628 22.101844478185473 42-43 22.66583424359611 26.79496023584439 28.266268226344426 22.27293729421508 44-45 22.74280667729376 26.958278940537017 27.99608641981502 22.302827962354204 46-47 22.980996598022532 26.890547783968184 27.52114750188709 22.607308116122198 48-49 22.775264718472187 27.143028267746132 27.442164442713455 22.639542571068223 50-51 22.74154035706609 27.33212078909454 27.322126069866947 22.604212783972425 52-53 23.054309695319834 27.145722155253676 27.148067587337454 22.65190056208904 54-55 22.931989631382223 27.06415541028727 27.21383595658466 22.790019001745847 56-57 22.942485024146396 27.278203571972043 27.11859230454145 22.66071909934011 58-59 22.858685199953214 27.39830215157964 27.140655345723257 22.60235730274389 60-61 22.964158361972657 27.33145255798612 27.123759492583595 22.58062958745763 62-63 22.946650385165775 27.49316328050299 26.949881504056705 22.610304830274526 64-65 22.955368909417658 27.429689132451973 26.954755145649795 22.66018681248058 66-67 23.042403238158467 27.345529087469973 26.827656803676724 22.78441087069483 68-69 22.906120154296822 27.31046986278623 26.99093556837311 22.792474414543843 70-71 22.967331241789783 27.067831016724973 27.009545091704464 22.955292649780784 72-73 23.009833952888506 27.196718545953015 26.86230386896286 22.93114363219562 74-75 22.70630451684435 27.36832931388633 26.960099289856732 22.96526687941259 76-77 22.969319251065105 27.234524572150676 26.83223128406868 22.963924892715546 78-79 22.9379959005754 27.244874634314066 26.824360266158813 22.992769198951716 80-81 22.967158509145822 27.29358494771165 26.796266409598246 22.942990133544278 82-83 22.903381494509905 27.204985871659993 26.92750820686602 22.964124426964084 84-85 23.057764531112348 27.215026470460234 26.8347598721702 22.892449126257215 86-87 22.86129282109899 27.271754963708684 26.9031922524466 22.963759962745726 88-89 22.886743710156406 27.148882083765546 26.910015295643415 23.054358910434637 90-91 22.993276004032275 27.114260608581326 26.957895398327196 22.9345679890592 92-93 23.041565068693494 27.040347259848087 26.93370307067939 22.98438460077903 94-95 22.892418039474265 27.073268071941527 27.005961590413314 23.028352298170898 96-97 22.91060079540791 27.187294180895282 27.072970420513183 22.829134603183622 98-99 23.0808617166583 28.008592190678865 26.058278994039785 22.852267098623045 100 21.151979498763545 27.558374260786 27.34553309704259 23.94411314340786 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2023.0 1 1848.5 2 2618.5 3 3841.5 4 5350.0 5 8770.5 6 11630.5 7 13793.5 8 15898.0 9 16300.5 10 15176.0 11 13955.5 12 15036.5 13 19879.5 14 31599.0 15 47721.5 16 61600.5 17 70218.0 18 69779.0 19 61686.5 20 51681.0 21 42229.0 22 35523.0 23 33537.0 24 35904.5 25 42798.5 26 53686.0 27 65463.5 28 77826.5 29 92450.5 30 106353.0 31 119312.5 32 134620.0 33 150856.5 34 165613.0 35 177887.5 36 193618.0 37 209936.5 38 220191.0 39 226933.5 40 235829.0 41 246419.0 42 254351.5 43 263489.0 44 272880.5 45 282883.5 46 293180.0 47 299730.0 48 303200.0 49 305352.5 50 307607.5 51 308579.0 52 305186.5 53 297595.5 54 289611.5 55 277526.5 56 259330.5 57 238255.0 58 215114.0 59 189916.5 60 161238.0 61 133394.0 62 107035.0 63 82375.0 64 62068.5 65 46616.5 66 35760.0 67 27866.0 68 21439.0 69 15391.0 70 10813.5 71 7787.0 72 5383.0 73 3743.0 74 2745.0 75 1943.5 76 1345.5 77 945.5 78 672.5 79 486.0 80 362.0 81 267.0 82 196.0 83 140.5 84 101.5 85 72.5 86 52.0 87 42.5 88 32.0 89 22.0 90 16.5 91 11.5 92 7.0 93 6.0 94 5.0 95 4.0 96 4.0 97 4.0 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 6.411324158435134E-4 3 0.0012319799363267512 4 4.022791628822045E-4 5 8.799856688048223E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.557675203575257 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008496114741193 26-27 0.024181553822456806 28-29 0.009155728488697775 30-31 1.5759314669009636E-4 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.024257910258242168 50-51 0.06777674358976037 52-53 0.05873268329702237 54-55 0.03751323264447654 56-57 0.004868989729015218 58-59 0.009924135644418085 60-61 0.03559970249346724 62-63 0.03671297445956917 64-65 0.0 66-67 0.0032142009140913846 68-69 0.03335813085317709 70-71 0.08665679378315971 72-73 0.07707506271760146 74-75 0.038125786594437105 76-77 0.008363030456842026 78-79 8.608276466537282E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.001436566486255938 92-93 0.002717970494555819 94-95 0.0010506577834081714 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 230.0 20-21 764.0 22-23 1640.0 24-25 4593.0 26-27 5405.0 28-29 7482.0 30-31 12089.0 32-33 12644.0 34-35 16523.0 36-37 18597.0 38-39 21776.0 40-41 29776.0 42-43 37409.0 44-45 51119.0 46-47 51444.0 48-49 32527.0 50-51 28767.0 52-53 27268.0 54-55 37267.0 56-57 38291.0 58-59 44733.0 60-61 49311.0 62-63 47006.0 64-65 43488.0 66-67 67882.0 68-69 36499.0 70-71 47554.0 72-73 49030.0 74-75 49705.0 76-77 40693.0 78-79 61478.0 80-81 75190.0 82-83 82515.0 84-85 91760.0 86-87 97530.0 88-89 99244.0 90-91 105840.0 92-93 115355.0 94-95 138790.0 96-97 318349.0 98-99 63120.0 100-101 5793992.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.43934851755533 #Duplication Level Percentage of deduplicated Percentage of total 1 88.72545500146998 74.03194162246326 2 7.703623710643709 12.855706872810066 3 1.946960622307933 4.873593777441242 4 0.7470832003932242 2.493445421168835 5 0.34369867730094283 1.4338996860168076 6 0.1721999053976886 0.8620948752700678 7 0.10922211516536703 0.6379395493175338 8 0.06684703139082802 0.4462138199666609 9 0.04281307393970258 0.3215065497806439 >10 0.13865662127094344 1.7433811067496072 >50 0.002529809879237909 0.1374524757428596 >100 8.331463678127746E-4 0.12275369142423445 >500 7.708447263624628E-5 0.04007055184820453 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.257122384006889E-5 6.285611920034446E-5 0.0 0.0 0.0 3 1.257122384006889E-5 6.285611920034446E-5 0.0 0.0 0.0 4 1.257122384006889E-5 1.0056979072055112E-4 0.0 1.257122384006889E-5 0.0 5 1.257122384006889E-5 1.0056979072055112E-4 0.0 2.514244768013778E-5 0.0 6 8.799856688048223E-5 1.0056979072055112E-4 0.0 2.514244768013778E-5 0.0 7 8.799856688048223E-5 1.0056979072055112E-4 0.0 2.514244768013778E-5 0.0 8 1.0056979072055112E-4 1.1314101456062001E-4 0.0 3.771367152020667E-5 0.0 9 1.0056979072055112E-4 3.017093721616534E-4 0.0 3.771367152020667E-5 0.0 10-11 1.1314101456062001E-4 3.017093721616534E-4 0.0 5.657050728031001E-5 0.0 12-13 1.257122384006889E-4 3.017093721616534E-4 0.0 1.0056979072055112E-4 0.0 14-15 1.382834622407578E-4 3.897079390421356E-4 0.0 1.1314101456062002E-4 0.0 16-17 1.948539695210678E-4 4.022791628822045E-4 0.0 2.0742519336113669E-4 0.0 18-19 2.1371080528117113E-4 4.337072224823767E-4 0.0 2.891381483215845E-4 0.0 20-21 2.2628202912124002E-4 4.5884967016251446E-4 0.0 3.017093721616534E-4 0.0 22-23 2.388532529613089E-4 5.154201774428245E-4 0.0 3.645654913619978E-4 0.0 24-25 2.891381483215845E-4 5.279914012828934E-4 0.0 4.7770650592261787E-4 0.0 26-27 3.2685181984179115E-4 5.279914012828934E-4 0.0 6.788460873637201E-4 0.0 28-29 3.2685181984179115E-4 5.405626251229624E-4 0.0 0.0012508367720868545 0.0 30-31 3.5199426752192893E-4 6.159899681633756E-4 0.0 0.0021119656051315737 0.0 32-33 3.9599355096217007E-4 6.159899681633756E-4 0.0 0.003488514615619117 0.0 34-35 4.5884967016251446E-4 7.102741469638923E-4 0.0 0.0048839204618667635 0.0 36-37 4.902777297626867E-4 8.04558325764409E-4 0.0 0.006744461590196959 0.0 38-39 4.902777297626867E-4 8.234151615245124E-4 0.0 0.010006694176694836 0.0 40-41 5.342770132029278E-4 0.0010496971906457523 0.0 0.01302378789831137 0.0 42-43 5.405626251229623E-4 0.0011125533098460968 0.0 0.01596545427688749 0.0 44-45 5.405626251229623E-4 0.0013262641151272681 0.0 0.018542555164101613 0.0 46-47 5.531338489630312E-4 0.0014959756369681979 0.0 0.021540792049958044 0.0 48-49 5.531338489630312E-4 0.0014959756369681979 0.0 0.024495029652374233 0.0 50-51 5.78276296643169E-4 0.0017536857256896102 0.0 0.026255000989983877 0.0 52-53 5.971331324032723E-4 0.0017851137852897825 0.0 0.02914638247319972 0.0 54-55 6.034187443233068E-4 0.0017851137852897825 0.0 0.03323831583314214 0.0 56-57 6.034187443233068E-4 0.0017851137852897825 0.0 0.03881993921813273 0.0 58-59 6.411324158435135E-4 0.0018039706210498858 0.0 0.044062139559441466 0.0 60-61 6.662748635236511E-4 0.0018542555164101613 0.0 0.0480472175167433 0.0 62-63 7.291309827239956E-4 0.001879397964090299 0.0 0.05095117022379921 0.0 64-65 7.605590423241679E-4 0.002074251933611367 0.0 0.05330827469381213 0.0 66-67 7.919871019243401E-4 0.00209310876937147 0.0 0.056677362682950594 0.0 68-69 8.297007734445467E-4 0.0021936785600920215 0.0 0.05997730894096868 0.0 70-71 8.422719972846157E-4 0.0022376778435322627 0.0 0.06184413568121891 0.0 72-73 8.799856688048223E-4 0.0022502490673723314 0.0 0.06396867251019056 0.0 74-75 8.799856688048223E-4 0.0022753915150524693 0.0 0.06569093017628 0.0 76-77 8.988425045649256E-4 0.002419960589213261 0.0 0.0676646123191708 0.0 78-79 9.051281164849601E-4 0.0024765310964935715 0.0 0.0691228742846188 0.0 80-81 9.302705641650979E-4 0.0024765310964935715 0.0 0.0697262930289421 0.0 82-83 9.302705641650979E-4 0.002482816708413606 0.0 0.07039256789246576 0.0 84-85 9.428417880051668E-4 0.002501673544173709 0.0 0.07102741469638923 0.0 86-87 9.428417880051668E-4 0.0025331016037738814 0.0 0.0714234082473514 0.0 88 9.428417880051668E-4 0.002627385782574398 0.0 0.0714799787546317 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14250 0.0 56.08254 1 GTATCAA 25740 0.0 39.08695 1 TCAACGC 32770 0.0 30.31856 4 TATCAAC 32955 0.0 30.293499 2 ATCAACG 32805 0.0 30.233921 3 CAACGCA 33815 0.0 29.30478 5 AACGCAG 34135 0.0 29.067842 6 GTGGTAT 6240 0.0 28.037626 1 TGGTATC 6270 0.0 26.801115 2 CGCAGAG 38225 0.0 25.890814 8 ACGCAGA 39245 0.0 25.205938 7 CTTATAC 4680 0.0 24.922335 1 GAGTACT 23565 0.0 24.197935 12-13 GCAGAGT 41305 0.0 23.01485 9 GTACATG 27835 0.0 22.999996 1 TACATGG 27825 0.0 22.542511 2 CAGAGTA 39040 0.0 21.905975 10-11 GTACTTT 26270 0.0 21.658987 14-15 ACATGGG 28955 0.0 21.274462 3 AGAGTAC 35685 0.0 21.177498 10-11 >>END_MODULE