##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139281_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8174355 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.754297433864814 33.0 33.0 33.0 33.0 33.0 2 32.762478140477135 33.0 33.0 33.0 33.0 33.0 3 32.761208193184665 33.0 33.0 33.0 33.0 33.0 4 36.6911850537443 37.0 37.0 37.0 37.0 37.0 5 36.71417169917382 37.0 37.0 37.0 37.0 37.0 6 36.719307272561565 37.0 37.0 37.0 37.0 37.0 7 36.70146280654559 37.0 37.0 37.0 37.0 37.0 8 36.69493837740103 37.0 37.0 37.0 37.0 37.0 9 36.69790289264413 37.0 37.0 37.0 37.0 37.0 10-11 36.6455377824917 37.0 37.0 37.0 37.0 37.0 12-13 36.64188611823196 37.0 37.0 37.0 37.0 37.0 14-15 38.83632476201487 40.0 37.0 40.0 37.0 40.0 16-17 38.76497882707565 40.0 37.0 40.0 37.0 40.0 18-19 38.78895931238611 40.0 37.0 40.0 37.0 40.0 20-21 38.8402880532993 40.0 37.0 40.0 37.0 40.0 22-23 38.87650261774252 40.0 38.5 40.0 37.0 40.0 24-25 38.88545114682879 40.0 40.0 40.0 37.0 40.0 26-27 38.7709513940262 40.0 37.0 40.0 37.0 40.0 28-29 38.67177947215531 40.0 37.0 40.0 37.0 40.0 30-31 38.60792275778887 40.0 37.0 40.0 37.0 40.0 32-33 38.54396922356912 40.0 37.0 40.0 37.0 40.0 34-35 38.520509705026264 40.0 37.0 40.0 37.0 40.0 36-37 38.47648845684651 40.0 37.0 40.0 37.0 40.0 38-39 38.40751776485095 40.0 37.0 40.0 37.0 40.0 40-41 38.379442755578616 40.0 37.0 40.0 37.0 40.0 42-43 38.27218887083024 40.0 37.0 40.0 37.0 40.0 44-45 38.230578442027806 40.0 37.0 40.0 37.0 40.0 46-47 38.158729324048196 40.0 37.0 40.0 37.0 40.0 48-49 38.098416314508015 40.0 37.0 40.0 37.0 40.0 50-51 37.99432873123706 40.0 37.0 40.0 33.0 40.0 52-53 37.95998038574622 40.0 37.0 40.0 33.0 40.0 54-55 37.90103530180474 40.0 37.0 40.0 33.0 40.0 56-57 37.79019040338457 40.0 37.0 40.0 33.0 40.0 58-59 37.54291445456661 40.0 37.0 40.0 33.0 40.0 60-61 37.46267869711106 38.5 37.0 40.0 33.0 40.0 62-63 37.10666624993598 37.0 37.0 40.0 33.0 40.0 64-65 36.931063216557895 37.0 37.0 40.0 33.0 40.0 66-67 36.78997452576063 37.0 37.0 40.0 33.0 40.0 68-69 36.5699537010116 37.0 37.0 40.0 33.0 40.0 70-71 36.29558543354149 37.0 37.0 40.0 33.0 40.0 72-73 36.05612412031313 37.0 37.0 37.0 33.0 40.0 74-75 35.804164875150036 37.0 37.0 37.0 33.0 40.0 76-77 34.003420221792524 35.0 33.0 37.0 30.0 37.0 78-79 35.41084520220127 37.0 33.0 37.0 33.0 37.0 80-81 35.57098877206276 37.0 37.0 37.0 33.0 37.0 82-83 35.514456298206056 37.0 35.0 37.0 33.0 37.0 84-85 35.07462986957998 37.0 33.0 37.0 33.0 37.0 86-87 35.16149827408503 37.0 33.0 37.0 33.0 37.0 88-89 35.15986443300707 37.0 33.0 37.0 33.0 37.0 90-91 35.09679819875609 37.0 33.0 37.0 33.0 37.0 92-93 35.015245829433596 37.0 33.0 37.0 33.0 37.0 94-95 34.96079284121949 37.0 33.0 37.0 33.0 37.0 96-97 34.924456499485046 37.0 33.0 37.0 33.0 37.0 98-99 34.89546843866483 37.0 33.0 37.0 33.0 37.0 100 34.82271401961283 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 3.0 20 37.0 21 230.0 22 797.0 23 2281.0 24 5376.0 25 10880.0 26 19172.0 27 30996.0 28 46191.0 29 64381.0 30 87556.0 31 116148.0 32 155065.0 33 210460.0 34 297844.0 35 457887.0 36 873514.0 37 2398917.0 38 3269367.0 39 127249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.291869511417104 20.157076613384177 14.51397694374663 24.037076931452084 2 14.230688537505406 20.583825879840063 42.542671562465785 22.642814020188748 3 18.09588099617115 26.039757981703048 30.80773814577421 25.056622876351593 4 12.075998545238814 18.457674134473386 37.97646243392511 31.48986488636269 5 13.194763454184383 37.65522529696298 35.38170923104458 13.768302017808054 6 29.579813942506778 37.644768302820225 18.720327169544262 14.055090585128735 7 26.164645406273646 32.925704841544075 22.120656614497413 18.78899313768487 8 24.390915246524038 36.67092999998165 21.15973676210539 17.778417991388924 9 25.00739202053251 16.96526514936041 20.704410317388955 37.322932512718126 10-11 23.864359940325567 26.843371740033312 28.470246276311713 20.82202204332941 12-13 24.93084775496048 24.295078938949924 28.578260914775537 22.195812391314053 14-15 22.194766437229603 25.845556010229554 26.11371172404428 25.84596582849656 16-17 21.744223244525106 29.3161050627236 26.730390348840977 22.209281343910313 18-19 21.629841131196283 27.79276163073417 28.646394730838093 21.931002507231455 20-21 22.577346419657257 27.021900966855096 28.59454141132768 21.80621120215997 22-23 22.180363463035064 27.59084648953081 28.46451971095903 21.764270336475093 24-25 22.175678944053864 27.754017687166314 28.58169523108764 21.488608137692182 26-27 22.070814791758135 27.947047446942726 28.56160641740185 21.420531343897288 28-29 21.605107337998636 27.408054770157225 28.786017454892672 22.20082043695147 30-31 22.47945768938058 27.43757177016172 28.724513999890544 21.358456540567154 32-33 22.33550919888229 27.52654106463219 28.922111257900735 21.215838478584782 34-35 22.000874643670823 27.744844615182974 29.084027967646442 21.17025277349976 36-37 22.084711695554912 27.356461872435922 28.758714502757858 21.800111929251308 38-39 21.66572249876607 27.117134730851166 29.131049840864563 22.0860929295182 40-41 21.70987093977442 27.022397610641008 29.304982341733865 21.96274910785071 42-43 21.978589727780044 26.922268009571717 29.307827165406653 21.791315097241586 44-45 21.660561123459786 27.469445850520106 28.88681461386648 21.98317841215363 46-47 22.33829246286749 26.997897760306174 28.12455962698721 22.539250149839123 48-49 22.01613989837084 27.12574369926336 28.423298965080505 22.434817437285293 50-51 21.781273945394172 27.594643686007313 28.43810250030467 22.185979868293845 52-53 21.820297946381114 27.776254767495047 28.67933231375262 21.72411497237122 54-55 21.783786868201826 27.839248225558812 28.15026777310825 22.226697133131115 56-57 22.197190620325998 28.145884656971166 27.622786990222508 22.034137732480335 58-59 21.677585231044148 28.481658932130237 28.22514503353088 21.615610803294732 60-61 22.137718273318004 28.847032268732743 27.453219642292893 21.56202981565636 62-63 21.762247233681588 29.06498861701351 27.429987858929156 21.742776290375748 64-65 21.80836469338171 28.801350269747694 27.543083484735693 21.847201552134905 66-67 21.972126141192135 28.509259664266906 27.50265536490413 22.015958829636833 68-69 22.054024686692035 28.16601385226352 27.670898507402857 22.109062953641587 70-71 22.053347544077983 27.882200984496947 27.792860951371956 22.27159052005311 72-73 22.081866607721736 27.869180752689953 27.75617217122842 22.292780468359894 74-75 22.01445164870171 28.02499062395579 27.66300433979005 22.29755338755245 76-77 22.1979339068237 27.99878513098224 27.556544624742312 22.24673633745175 78-79 22.165434330849205 28.0071490491603 27.52625600311976 22.30116061687073 80-81 22.122690173136526 28.037830083016207 27.5092320575917 22.330247686255568 82-83 22.14911222430422 27.976771909232905 27.669748035807277 22.204367830655595 84-85 22.323465254836655 27.933194376232006 27.52084876050404 22.222491608427294 86-87 22.087054746284867 28.007821619225894 27.638640881012027 22.266482753477217 88-89 22.188718687480765 28.040230704235007 27.57371067458545 22.197339933698775 90-91 22.21006786666476 28.050304440437053 27.586340069246518 22.153287623651668 92-93 22.22018757797259 28.006563359343524 27.633699197498686 22.139549865185202 94-95 22.106547060938084 28.111007075183725 27.65341338553809 22.129032478340104 96-97 22.180110176305934 28.1741923561462 27.763159027714302 21.882538439833564 98-99 23.27136762539442 30.082646347172037 27.94953515184167 18.696450875591868 100 22.190086595267474 31.097567732908736 21.89431068547997 24.81803498634382 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2529.0 1 2116.0 2 2361.0 3 3287.0 4 4426.5 5 7011.0 6 9316.0 7 11157.0 8 12704.5 9 12834.0 10 11837.5 11 10932.0 12 11877.0 13 15490.5 14 24047.0 15 35679.5 16 45219.0 17 50893.5 18 52191.5 19 49450.0 20 44472.0 21 39207.0 22 35801.5 23 36553.5 24 42006.5 25 51487.5 26 64655.0 27 80368.0 28 96402.0 29 113326.0 30 130412.0 31 147657.0 32 166163.0 33 184641.0 34 204136.0 35 222518.5 36 241583.0 37 258734.0 38 270253.0 39 281499.5 40 294451.0 41 305594.0 42 312064.0 43 318774.0 44 325810.0 45 331603.5 46 340021.0 47 353385.0 48 380912.5 49 383613.0 50 362112.5 51 352423.0 52 335188.5 53 304647.0 54 271648.0 55 245616.0 56 223981.0 57 202055.5 58 178870.5 59 155630.5 60 131454.5 61 107836.5 62 85169.0 63 64789.5 64 48258.5 65 34956.0 66 25539.5 67 19089.0 68 14217.0 69 10063.5 70 6967.0 71 4865.0 72 3288.0 73 2129.0 74 1395.5 75 945.5 76 625.5 77 402.0 78 263.0 79 177.5 80 119.5 81 88.0 82 68.5 83 43.5 84 25.5 85 17.5 86 15.5 87 12.5 88 8.0 89 6.0 90 5.5 91 4.5 92 3.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001186637967154595 4 0.031403089295730366 5 0.002299875647681071 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.505134639077868E-5 22-23 0.0 24-25 0.0031447539416645694 26-27 0.040465237625253586 28-29 0.08805180483237857 30-31 0.08405330785720955 32-33 0.038449363822159216 34-35 0.0021813238380429902 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.985906813705855E-5 56-57 1.069154303623384E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.4457483648947428E-5 72-73 0.011761835447182359 74-75 0.0254645796741328 76-77 0.003797248581909359 78-79 0.0 80-81 0.0 82-83 0.004596798981294459 84-85 0.04305246268780156 86-87 0.04350959936845463 88-89 0.010400894884838327 90-91 9.516232789893E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 99.0 20-21 413.0 22-23 940.0 24-25 2197.0 26-27 3590.0 28-29 7097.0 30-31 17036.0 32-33 21999.0 34-35 29915.0 36-37 43749.0 38-39 49365.0 40-41 52707.0 42-43 61582.0 44-45 73529.0 46-47 71493.0 48-49 64291.0 50-51 54469.0 52-53 51761.0 54-55 65552.0 56-57 78901.0 58-59 74783.0 60-61 78551.0 62-63 81385.0 64-65 86641.0 66-67 98347.0 68-69 71362.0 70-71 61313.0 72-73 57405.0 74-75 58101.0 76-77 57970.0 78-79 61347.0 80-81 62459.0 82-83 60211.0 84-85 59551.0 86-87 63022.0 88-89 68081.0 90-91 73337.0 92-93 77595.0 94-95 93474.0 96-97 262762.0 98-99 492010.0 100-101 5323963.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.9509920410179 #Duplication Level Percentage of deduplicated Percentage of total 1 89.7909745259111 77.17623336831825 2 7.371369798750366 12.671530938075845 3 1.6805733540267715 4.333408409289053 4 0.560781733198998 1.9279898514774119 5 0.25972803853590354 1.1161941286514316 6 0.12485203485671423 0.6438693752564599 7 0.06438248229019326 0.38736167560337637 8 0.039904296362979194 0.2743851087277475 9 0.025015187519609034 0.19350721650622377 >10 0.08040336984669628 1.033812308767628 >50 0.0015178577604843383 0.08358956046474933 >100 3.9015985508338946E-4 0.06617803226844415 >500 6.42968933802771E-5 0.03418988127133671 >1k 4.2864191673012065E-5 0.057750145322090746 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.893352441874619E-5 0.0 0.0 0.0 3 0.0 4.893352441874619E-5 0.0 1.2233381104686547E-5 0.0 4 0.0 8.563366773280583E-5 0.0 2.4466762209373094E-5 0.0 5 2.4466762209373094E-5 8.563366773280583E-5 0.0 2.4466762209373094E-5 0.0 6 2.4466762209373094E-5 8.563366773280583E-5 0.0 2.4466762209373094E-5 0.0 7 2.4466762209373094E-5 8.563366773280583E-5 0.0 2.4466762209373094E-5 0.0 8 2.4466762209373094E-5 8.563366773280583E-5 0.0 4.893352441874619E-5 1.2233381104686547E-5 9 2.4466762209373094E-5 1.590339543609251E-4 0.0 9.786704883749238E-5 1.2233381104686547E-5 10-11 2.4466762209373094E-5 1.590339543609251E-4 0.0 1.1010042994217892E-4 1.2233381104686547E-5 12-13 3.670014331405964E-5 1.590339543609251E-4 0.0 1.1010042994217892E-4 1.2233381104686547E-5 14-15 4.2816833866402914E-5 2.1408416933201458E-4 0.0 1.2233381104686546E-4 3.670014331405964E-5 16-17 5.5050214971089456E-5 2.2020085988435785E-4 0.0 1.34567192151552E-4 4.893352441874619E-5 18-19 6.116690552343273E-5 2.2020085988435785E-4 0.0 1.6515064491326838E-4 4.893352441874619E-5 20-21 6.116690552343273E-5 2.324342409890444E-4 0.0 2.0185078822732803E-4 4.893352441874619E-5 22-23 8.563366773280583E-5 2.446676220937309E-4 0.0 2.69134384303104E-4 7.951697718046255E-5 24-25 9.786704883749238E-5 2.69134384303104E-4 0.0 2.8748445596013387E-4 1.2233381104686546E-4 26-27 1.1010042994217892E-4 2.8136776540779057E-4 0.0 4.2816833866402915E-4 1.34567192151552E-4 28-29 1.1010042994217892E-4 2.8136776540779057E-4 0.0 0.0011621712049452219 1.34567192151552E-4 30-31 1.1010042994217892E-4 3.3030128982653676E-4 0.0 0.003529330448702069 1.34567192151552E-4 32-33 1.1010042994217892E-4 3.3641798037888006E-4 0.0 0.0075663462132486295 1.34567192151552E-4 34-35 1.1621712049452219E-4 4.0981826700699935E-4 0.0 0.013071367710357575 1.34567192151552E-4 36-37 1.2233381104686546E-4 4.7710186308277534E-4 0.0 0.022093486275063905 1.34567192151552E-4 38-39 1.2233381104686546E-4 5.076853158444917E-4 0.0 0.04397900507134814 1.34567192151552E-4 40-41 1.2233381104686546E-4 5.872022930249542E-4 0.0 0.0676077806750502 1.34567192151552E-4 42-43 1.2845050159920873E-4 6.055523646819841E-4 0.0 0.08219608764238891 1.34567192151552E-4 44-45 1.34567192151552E-4 6.606025796530735E-4 0.0 0.10023420808124922 1.34567192151552E-4 46-47 1.4068388270389528E-4 6.973027229671332E-4 0.0 0.11974645094322427 1.34567192151552E-4 48-49 1.4680057325623856E-4 6.973027229671332E-4 0.0 0.1390446096358673 1.4680057325623856E-4 50-51 1.4680057325623856E-4 7.82936390699939E-4 0.0 0.15621416001629487 1.4680057325623856E-4 52-53 1.4680057325623856E-4 7.82936390699939E-4 0.0 0.19429667539518408 1.590339543609251E-4 54-55 1.4680057325623856E-4 7.82936390699939E-4 0.0 0.23889346621231888 1.7126733546561165E-4 56-57 1.4680057325623856E-4 7.951697718046256E-4 0.0 0.28487262909428324 1.7126733546561165E-4 58-59 1.5291726380858183E-4 7.951697718046256E-4 0.0 0.31507073035120203 1.7126733546561165E-4 60-61 1.590339543609251E-4 7.951697718046256E-4 0.0 0.33745170108222605 1.7126733546561165E-4 62-63 1.590339543609251E-4 7.951697718046256E-4 0.0 0.35375879809477323 1.7126733546561165E-4 64-65 1.590339543609251E-4 8.685700584327448E-4 0.0 0.36120892718752734 1.7126733546561165E-4 66-67 1.590339543609251E-4 8.930368206421179E-4 0.0 0.3676926191730112 1.7126733546561165E-4 68-69 1.7126733546561165E-4 9.17503582851491E-4 0.0 0.373943876917506 1.7126733546561165E-4 70-71 1.7126733546561165E-4 9.17503582851491E-4 0.0 0.3787026621672291 1.7126733546561165E-4 72-73 1.7126733546561165E-4 9.17503582851491E-4 0.0 0.38236655980808276 1.7126733546561165E-4 74-75 1.7126733546561165E-4 9.419703450608641E-4 0.0 0.38484381948178176 1.7126733546561165E-4 76-77 1.7126733546561165E-4 0.001033720703346013 0.0 0.38727826232161433 1.7126733546561165E-4 78-79 1.7126733546561165E-4 0.001076537537212416 0.0 0.3888380184124619 1.7126733546561165E-4 80-81 1.7126733546561165E-4 0.001076537537212416 0.0 0.3894925043015626 1.7126733546561165E-4 82-83 1.7126733546561165E-4 0.001076537537212416 0.0 0.38998795623630245 1.7126733546561165E-4 84-85 1.7126733546561165E-4 0.0010887709183171027 0.0 0.39029379076391957 1.7126733546561165E-4 86-87 1.7126733546561165E-4 0.0010887709183171027 0.0 0.39040389119386176 1.7126733546561165E-4 88 1.7126733546561165E-4 0.001186637967154595 0.0 0.39040389119386176 1.835007165702982E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12440 0.0 52.27442 1 CTTATAC 13375 0.0 44.177006 1 GTATCAA 22275 0.0 36.511414 1 TATACAC 18095 0.0 35.046352 3 TTATACA 17910 0.0 33.891537 2 TCAACGC 26770 0.0 29.904657 4 ATCAACG 26875 0.0 29.819775 3 TATCAAC 27670 0.0 29.193117 2 CAACGCA 27475 0.0 29.128044 5 AACGCAG 28435 0.0 28.143614 6 TGGTATC 5125 0.0 26.089605 2 TACACAT 24250 0.0 25.5825 5 GTGGTAT 5715 0.0 25.327305 1 ACACATC 23750 0.0 25.101757 6 ACGCAGA 32230 0.0 24.79028 7 ACATCTC 24350 0.0 24.605213 8 CGCAGAG 32620 0.0 24.506899 8 CACATCT 26035 0.0 22.800877 7 ATACACA 30275 0.0 21.787748 4 CATCTCC 27570 0.0 21.500624 9 >>END_MODULE