##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139280_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7920067 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79314430042069 33.0 33.0 33.0 33.0 33.0 2 32.791346462094324 33.0 33.0 33.0 33.0 33.0 3 32.79289733281297 33.0 33.0 33.0 33.0 33.0 4 36.73232549674138 37.0 37.0 37.0 37.0 37.0 5 36.753125573306384 37.0 37.0 37.0 37.0 37.0 6 36.75806820826137 37.0 37.0 37.0 37.0 37.0 7 36.7435709824172 37.0 37.0 37.0 37.0 37.0 8 36.73887683020863 37.0 37.0 37.0 37.0 37.0 9 36.73580589659153 37.0 37.0 37.0 37.0 37.0 10-11 36.69053999164401 37.0 37.0 37.0 37.0 37.0 12-13 36.69085021629236 37.0 37.0 37.0 37.0 37.0 14-15 38.966522126643625 40.0 40.0 40.0 37.0 40.0 16-17 38.913897761218436 40.0 40.0 40.0 37.0 40.0 18-19 38.93685874122025 40.0 40.0 40.0 37.0 40.0 20-21 38.97750991294578 40.0 40.0 40.0 37.0 40.0 22-23 39.010164596010796 40.0 40.0 40.0 37.0 40.0 24-25 39.01720289493275 40.0 40.0 40.0 37.0 40.0 26-27 38.924898951199296 40.0 40.0 40.0 37.0 40.0 28-29 38.853878864981084 40.0 40.0 40.0 37.0 40.0 30-31 38.783151829488034 40.0 37.0 40.0 37.0 40.0 32-33 38.724795629486124 40.0 37.0 40.0 37.0 40.0 34-35 38.72020188973877 40.0 37.0 40.0 37.0 40.0 36-37 38.68421213950149 40.0 37.0 40.0 37.0 40.0 38-39 38.64211786066868 40.0 37.0 40.0 37.0 40.0 40-41 38.59612716605533 40.0 37.0 40.0 37.0 40.0 42-43 38.472764088672086 40.0 37.0 40.0 37.0 40.0 44-45 38.4329005976716 40.0 37.0 40.0 37.0 40.0 46-47 38.3681859391513 40.0 37.0 40.0 37.0 40.0 48-49 38.29667202113299 40.0 37.0 40.0 37.0 40.0 50-51 38.2461486677406 40.0 37.0 40.0 37.0 40.0 52-53 38.202415562389646 40.0 37.0 40.0 37.0 40.0 54-55 38.12606566455986 40.0 37.0 40.0 37.0 40.0 56-57 38.023668463376275 40.0 37.0 40.0 37.0 40.0 58-59 37.76591397249178 40.0 37.0 40.0 33.0 40.0 60-61 37.68925115631734 40.0 37.0 40.0 33.0 40.0 62-63 37.33845592665482 37.0 37.0 40.0 33.0 40.0 64-65 37.147772189925846 37.0 37.0 40.0 33.0 40.0 66-67 37.004730003354794 37.0 37.0 40.0 33.0 40.0 68-69 36.77980004255609 37.0 37.0 40.0 33.0 40.0 70-71 36.50741480485535 37.0 37.0 40.0 33.0 40.0 72-73 36.268493861512525 37.0 37.0 37.0 33.0 40.0 74-75 36.01918315143102 37.0 37.0 37.0 33.0 40.0 76-77 34.220846349999746 35.0 33.0 37.0 30.0 37.0 78-79 35.59854139374847 37.0 35.0 37.0 33.0 37.0 80-81 35.73968663135359 37.0 37.0 37.0 33.0 37.0 82-83 35.68225641322178 37.0 37.0 37.0 33.0 37.0 84-85 35.24696227955173 37.0 33.0 37.0 33.0 37.0 86-87 35.34412040624119 37.0 33.0 37.0 33.0 37.0 88-89 35.34919588106439 37.0 33.0 37.0 33.0 37.0 90-91 35.2959753838835 37.0 33.0 37.0 33.0 37.0 92-93 35.22394298756173 37.0 33.0 37.0 33.0 37.0 94-95 35.17524252178984 37.0 33.0 37.0 33.0 37.0 96-97 35.13983123326268 37.0 33.0 37.0 33.0 37.0 98-99 35.107497443534335 37.0 33.0 37.0 33.0 37.0 100 35.036067497567444 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 0.0 19 5.0 20 25.0 21 131.0 22 563.0 23 1624.0 24 3761.0 25 7989.0 26 14674.0 27 24033.0 28 36756.0 29 52798.0 30 72481.0 31 96840.0 32 131042.0 33 178994.0 34 254446.0 35 393731.0 36 761743.0 37 2243094.0 38 3498902.0 39 146434.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.94408961439341 19.98067693114212 14.339853438108541 23.735380016355922 2 14.497516245759032 20.754521394831634 42.12268658838366 22.625275771025674 3 18.17979567313307 25.924458933299764 30.435266252076875 25.46047914149029 4 12.348966637768495 18.01629210190748 38.906095594342425 30.728645665981595 5 13.395719855608796 37.51884657746406 35.52157970209876 13.563853864828387 6 29.898560201574053 37.771182996305456 18.78484108783423 13.545415714286255 7 26.421468404244557 32.744053806615526 22.8764605147911 17.958017274348816 8 24.33120830922264 36.67586397943351 21.14182872442872 17.851098986915137 9 25.383345873210416 17.134451009063433 21.268469067244002 36.21373405048215 10-11 24.070869602492 26.847392831399024 28.79169456521012 20.290043000898855 12-13 24.973589238575887 24.402419828014082 28.93834105191282 21.685649881497216 14-15 22.10867660589235 25.8124268393184 26.725701941662866 25.35319461312638 16-17 21.62090295448258 28.994016085975034 27.340892444470484 22.044188515071905 18-19 21.569419804150648 27.925515024052196 29.275415220603563 21.229649951193593 20-21 22.392148492175824 27.102147872850253 29.181440359357826 21.324263275616104 22-23 22.073245871925824 27.11314155515854 29.05873285786866 21.75487971504698 24-25 21.81519624460012 27.2516814073454 29.212226621327314 21.720895726727164 26-27 21.777652969656398 27.398195319219415 29.099597660210012 21.724554050914172 28-29 21.610010767081498 27.37124064585284 29.126897348636227 21.891851238429435 30-31 21.944152761346526 27.224162519088168 29.079184694075355 21.752500025489947 32-33 21.754909361893187 27.450947302065927 28.986937573400056 21.80720576264083 34-35 21.847292377874886 27.57777351884173 29.005572287039538 21.56936181624384 36-37 21.896705134338767 27.415878182653202 28.859358043175686 21.82805863983234 38-39 21.774780488832853 27.506048346682444 28.938486245440288 21.780684919044415 40-41 22.022738369976025 27.38682303835987 28.815266893814556 21.77517169784955 42-43 21.965079316292567 27.477771329651652 28.637112137833387 21.920037216222397 44-45 22.039659096818795 27.6551441468464 28.407895835839486 21.897300920495322 46-47 22.177206674922058 27.590049489261464 28.014107743926964 22.21863609188952 48-49 22.07049510661714 27.70116620084361 28.045125686611332 22.183213005927925 50-51 22.00597512396818 27.891171507553658 27.979892146234377 22.122961222243784 52-53 22.197388907566314 27.810858055605785 27.913332259994526 22.078420776833376 54-55 22.146079302130637 27.718807453215682 27.881802185512033 22.253311059141645 56-57 22.23012440214596 27.856656416034202 27.750707337736753 22.162511844083085 58-59 22.151434442182673 27.96117234397611 27.85400682439696 22.033386389444264 60-61 22.255494710166886 27.994874012515 27.728918949349012 22.020712327969093 62-63 22.189777095888182 28.092615263685726 27.64932977430634 22.068277866119747 64-65 22.14968290800891 28.06652216220302 27.63569216122006 22.14810276856801 66-67 22.208052108732907 28.01591365354039 27.540236446650756 22.235797791075946 68-69 22.200521791413777 27.96270022888272 27.599516644470462 22.23726133523304 70-71 22.178409778194474 27.700379341640772 27.673378583250024 22.447832296914733 72-73 22.252622241380823 27.721026075884435 27.608980712486066 22.417370970248673 74-75 22.102382948924866 27.89462303219504 27.612768698317375 22.39022532056272 76-77 22.245814191939704 27.82897148544814 27.50012299289101 22.42509132972114 78-79 22.25451484705617 27.886517039969462 27.435862467606835 22.423105645367528 80-81 22.2330332732399 27.877630741377917 27.42841070935183 22.460925276030352 82-83 22.276146949550796 27.863037132393494 27.541386254661038 22.319429663394672 84-85 22.421317062520256 27.798207353340924 27.427255954909825 22.35321962922899 86-87 22.21485384081785 27.825644792225766 27.59556139376191 22.363939973194473 88-89 22.24948243183214 27.85616991317782 27.534072049544594 22.360275605445445 90-91 22.265802767680334 27.861998875973022 27.577878726420764 22.294319629925884 92-93 22.28833136414207 27.816247017682898 27.586491849749656 22.308929768425372 94-95 22.139027872369574 27.961197552900213 27.61049869523408 22.28927587949613 96-97 22.236130299338008 27.990930733023205 27.70851672108577 22.06442224655302 98-99 23.34230814149324 29.904283242600744 27.882502911814953 18.870905704091058 100 22.31181547251582 30.937517817018325 21.76255101566916 24.988115694796694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2262.0 1 1952.0 2 2260.0 3 3106.5 4 4240.0 5 6821.0 6 8960.5 7 10461.0 8 11612.5 9 11669.5 10 10883.5 11 10178.5 12 11198.0 13 14474.5 14 22217.0 15 32992.5 16 41991.0 17 47686.0 18 49347.0 19 47202.5 20 43149.0 21 38960.5 22 36690.5 23 38161.0 24 44055.5 25 54077.0 26 67661.5 27 83372.0 28 98855.0 29 115742.5 30 132263.0 31 147967.0 32 165797.5 33 183570.5 34 201892.5 35 218925.0 36 237085.0 37 254214.0 38 266254.0 39 276107.0 40 287366.5 41 297570.5 42 303081.5 43 309821.0 44 316310.5 45 323123.0 46 330570.0 47 333529.0 48 330539.0 49 323888.5 50 316688.5 51 305907.5 52 291282.5 53 275268.0 54 258305.0 55 239690.0 56 220866.5 57 201209.5 58 180768.0 59 159389.0 60 134089.0 61 108416.0 62 85015.5 63 65209.5 64 48786.0 65 35982.0 66 27112.5 67 20919.5 68 15920.5 69 11340.0 70 7945.0 71 5698.0 72 4038.5 73 2766.0 74 1824.5 75 1122.5 76 719.5 77 485.5 78 326.0 79 215.0 80 157.5 81 115.0 82 79.0 83 48.5 84 32.0 85 20.0 86 14.5 87 14.0 88 11.5 89 8.0 90 3.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001388877139549451 4 0.032966892830578326 5 0.0024494742279326676 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.0505627621123704E-5 22-23 0.0 24-25 0.0035488522241515687 26-27 0.0410758577546141 28-29 0.08830033235860855 30-31 0.08612294871916554 32-33 0.03914194415093976 34-35 0.0025506319524597823 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.0513659293556074E-5 56-57 1.0335140352239498E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.9253250804062166E-5 72-73 0.011874365671017085 74-75 0.024912955249862437 76-77 0.003254705937318563 78-79 0.0 80-81 0.0 82-83 0.005176095067612742 84-85 0.04293317192201645 86-87 0.044198591684625206 88-89 0.011207176014203887 90-91 1.1205041372214186E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 420.0 22-23 1027.0 24-25 2022.0 26-27 3450.0 28-29 7027.0 30-31 17041.0 32-33 21615.0 34-35 29574.0 36-37 43390.0 38-39 49390.0 40-41 52383.0 42-43 60689.0 44-45 71009.0 46-47 69753.0 48-49 61716.0 50-51 53812.0 52-53 50314.0 54-55 54138.0 56-57 57213.0 58-59 58354.0 60-61 57670.0 62-63 58309.0 64-65 61262.0 66-67 66052.0 68-69 60600.0 70-71 58511.0 72-73 56114.0 74-75 56096.0 76-77 55839.0 78-79 59149.0 80-81 60132.0 82-83 58244.0 84-85 58065.0 86-87 60774.0 88-89 64630.0 90-91 68633.0 92-93 73190.0 94-95 87852.0 96-97 253972.0 98-99 483648.0 100-101 5296902.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.22331799795377 #Duplication Level Percentage of deduplicated Percentage of total 1 89.69726723786678 76.44298729360162 2 7.280487629133521 12.409346247956291 3 1.7136567238349405 4.381305357441503 4 0.6209621640812885 2.116818238967888 5 0.2793682498985967 1.1904344599819963 6 0.14235722096357462 0.7279292826890215 7 0.0734535990463865 0.4381971600737074 8 0.050247101436736094 0.342577976337472 9 0.03208117944395708 0.24606581017515952 >10 0.10721226097458131 1.4047946455999685 >50 0.0023077193811949855 0.13460385086102522 >100 4.8115741040811154E-4 0.06522603257753366 >500 7.065403368441667E-5 0.036911002035525206 >1k 4.710249433758441E-5 0.06280264170128393 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.2626155814085917E-5 0.0 3 0.0 0.0 0.0 1.2626155814085917E-5 0.0 4 0.0 5.0504623256343666E-5 0.0 2.5252311628171833E-5 0.0 5 0.0 6.313077907042957E-5 0.0 6.313077907042957E-5 0.0 6 1.2626155814085917E-5 6.313077907042957E-5 0.0 6.313077907042957E-5 0.0 7 1.2626155814085917E-5 6.313077907042957E-5 0.0 6.313077907042957E-5 0.0 8 1.2626155814085917E-5 7.57569348845155E-5 0.0 7.57569348845155E-5 0.0 9 1.2626155814085917E-5 1.641400255831169E-4 0.0 1.0100924651268733E-4 1.2626155814085917E-5 10-11 2.5252311628171833E-5 1.641400255831169E-4 0.0 1.325746360479021E-4 1.2626155814085917E-5 12-13 2.5252311628171833E-5 1.7045310349015987E-4 0.0 1.5151386976903098E-4 2.5252311628171833E-5 14-15 2.5252311628171833E-5 3.0934081744510495E-4 0.0 1.641400255831169E-4 4.419154534930071E-5 16-17 5.0504623256343666E-5 3.345931290732768E-4 0.0 1.8939233721128874E-4 6.313077907042957E-5 18-19 5.0504623256343666E-5 3.914108302366634E-4 0.0 2.0201849302537464E-4 6.313077907042957E-5 20-21 5.0504623256343666E-5 4.4822853140005E-4 0.0 2.272708046535465E-4 6.313077907042957E-5 22-23 5.0504623256343666E-5 4.924200767493507E-4 0.0 2.4621003837467536E-4 6.313077907042957E-5 24-25 5.0504623256343666E-5 5.492377779127374E-4 0.0 2.904015837239761E-4 6.944385697747254E-5 26-27 5.0504623256343666E-5 5.681770116338662E-4 0.0 3.7878467442257753E-4 8.207001279155845E-5 28-29 5.0504623256343666E-5 5.808031674479522E-4 0.0 7.386301151240261E-4 8.838309069860142E-5 30-31 5.0504623256343666E-5 6.313077907042958E-4 0.0 0.0018686710604847157 8.838309069860142E-5 32-33 5.0504623256343666E-5 6.313077907042958E-4 0.0 0.004084561405856794 8.838309069860142E-5 34-35 5.0504623256343666E-5 7.070647255888113E-4 0.0 0.007310544216355745 8.838309069860142E-5 36-37 5.0504623256343666E-5 7.891347383803698E-4 0.0 0.012266310373384468 1.1363540232677325E-4 38-39 5.0504623256343666E-5 8.270132058226275E-4 0.0 0.025700540159571884 1.1363540232677325E-4 40-41 5.0504623256343666E-5 0.0010353447767550452 0.0 0.04073197865624117 1.1363540232677325E-4 42-43 5.0504623256343666E-5 0.0010542840104761741 0.0 0.049677610050521036 1.2626155814085918E-4 44-45 5.0504623256343666E-5 0.001205797880245205 0.0 0.06009418859714191 1.4520079186198804E-4 46-47 5.0504623256343666E-5 0.0013383725162931072 0.0 0.0710410656879544 1.51513869769031E-4 48-49 5.0504623256343666E-5 0.0013383725162931072 0.0 0.08107254648224567 1.51513869769031E-4 50-51 5.0504623256343666E-5 0.0014393817628057944 0.0 0.09092726109513972 1.51513869769031E-4 52-53 5.0504623256343666E-5 0.0014520079186198804 0.0 0.11424145780584938 1.641400255831169E-4 54-55 5.0504623256343666E-5 0.0014646340744339662 0.0 0.14015032953635367 1.7676618139720284E-4 56-57 5.0504623256343666E-5 0.0014772602302480522 0.0 0.16790893309362157 1.7676618139720284E-4 58-59 5.0504623256343666E-5 0.0014898863860621381 0.0 0.19367891711017093 1.7676618139720284E-4 60-61 6.944385697747254E-5 0.0015340779314114389 0.0 0.20506139657656935 2.0201849302537467E-4 62-63 1.0100924651268733E-4 0.0015530171651325676 0.0 0.21800320628600744 2.0201849302537467E-4 64-65 1.0100924651268733E-4 0.0017676618139720282 0.0 0.22385542950583626 2.0201849302537467E-4 66-67 1.0100924651268733E-4 0.0017929141256002 0.0 0.2287859433512368 2.0201849302537467E-4 68-69 1.0100924651268733E-4 0.001824479515135415 0.0 0.23353337793733311 2.0201849302537467E-4 70-71 1.0100924651268733E-4 0.001830792593042458 0.0 0.23800935017342656 2.0201849302537467E-4 72-73 1.1363540232677325E-4 0.0018497318267635867 0.0 0.24115326297113396 2.1464464883946057E-4 74-75 1.1363540232677325E-4 0.0018749841383917587 0.0 0.24394364340604693 2.1464464883946057E-4 76-77 1.1363540232677325E-4 0.00196336722909036 0.0 0.24686659847700781 2.1464464883946057E-4 78-79 1.1363540232677325E-4 0.0020201849302537464 0.0 0.24857744258981646 2.1464464883946057E-4 80-81 1.1363540232677325E-4 0.0020201849302537464 0.0 0.24920243730261374 2.2095772674650353E-4 82-83 1.1363540232677325E-4 0.0020264980081607896 0.0 0.2497074835351772 2.398969604676324E-4 84-85 1.199484802338162E-4 0.0020454372418819184 0.0 0.2498716235607603 2.398969604676324E-4 86-87 1.325746360479021E-4 0.0020706895535100903 0.0 0.2499473804956448 2.4621003837467536E-4 88 1.641400255831169E-4 0.0021716988000227777 0.0 0.24996000665145887 2.525231162817183E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10720 0.0 50.68672 1 GTATCAA 19320 0.0 37.661346 1 TCAACGC 23395 0.0 30.571276 4 ATCAACG 23570 0.0 30.38076 3 TATCAAC 24270 0.0 29.751118 2 CAACGCA 24225 0.0 29.514893 5 AACGCAG 24885 0.0 28.74909 6 ACGCAGA 28295 0.0 25.26926 7 CGCAGAG 28780 0.0 24.873125 8 GTGGTAT 5170 0.0 23.153194 1 TGGTATC 4770 0.0 23.12303 2 GCAGAGT 33810 0.0 21.197966 9 GAGTACT 20805 0.0 20.521261 12-13 GTACATG 23285 0.0 20.43442 1 TACATGG 23090 0.0 20.125608 2 ACATGGG 24060 0.0 18.994396 3 CAGAGTA 32920 0.0 18.960424 10-11 AGAGTAC 30565 0.0 18.610582 10-11 GTACTTT 23185 0.0 18.29552 14-15 CTTATAC 6955 0.0 18.255878 1 >>END_MODULE