##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139278_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8108988 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78779102891754 33.0 33.0 33.0 33.0 33.0 2 32.793610744028726 33.0 33.0 33.0 33.0 33.0 3 32.795198365073425 33.0 33.0 33.0 33.0 33.0 4 36.73231826215552 37.0 37.0 37.0 37.0 37.0 5 36.752326554189004 37.0 37.0 37.0 37.0 37.0 6 36.7568824864459 37.0 37.0 37.0 37.0 37.0 7 36.7421066599186 37.0 37.0 37.0 37.0 37.0 8 36.73740631999949 37.0 37.0 37.0 37.0 37.0 9 36.73714155206544 37.0 37.0 37.0 37.0 37.0 10-11 36.69157069908107 37.0 37.0 37.0 37.0 37.0 12-13 36.69080926004577 37.0 37.0 37.0 37.0 37.0 14-15 38.96153909711052 40.0 40.0 40.0 37.0 40.0 16-17 38.903899352175635 40.0 40.0 40.0 37.0 40.0 18-19 38.926687152576875 40.0 40.0 40.0 37.0 40.0 20-21 38.96107841561664 40.0 40.0 40.0 37.0 40.0 22-23 38.992068988152866 40.0 40.0 40.0 37.0 40.0 24-25 39.0036233066066 40.0 40.0 40.0 37.0 40.0 26-27 38.900132506531186 40.0 40.0 40.0 37.0 40.0 28-29 38.82299023126774 40.0 40.0 40.0 37.0 40.0 30-31 38.7483920558068 40.0 37.0 40.0 37.0 40.0 32-33 38.69853849255115 40.0 37.0 40.0 37.0 40.0 34-35 38.69540197471841 40.0 37.0 40.0 37.0 40.0 36-37 38.649669208189934 40.0 37.0 40.0 37.0 40.0 38-39 38.591615352782384 40.0 37.0 40.0 37.0 40.0 40-41 38.553944272896665 40.0 37.0 40.0 37.0 40.0 42-43 38.439802092753546 40.0 37.0 40.0 37.0 40.0 44-45 38.40027922608604 40.0 37.0 40.0 37.0 40.0 46-47 38.334913900098414 40.0 37.0 40.0 37.0 40.0 48-49 38.26092262888878 40.0 37.0 40.0 37.0 40.0 50-51 38.17292875540919 40.0 37.0 40.0 37.0 40.0 52-53 38.141423932544875 40.0 37.0 40.0 37.0 40.0 54-55 38.072447268885945 40.0 37.0 40.0 37.0 40.0 56-57 37.968344153150724 40.0 37.0 40.0 33.0 40.0 58-59 37.724635684550634 40.0 37.0 40.0 33.0 40.0 60-61 37.633185394202954 40.0 37.0 40.0 33.0 40.0 62-63 37.29888826219201 37.0 37.0 40.0 33.0 40.0 64-65 37.12111790103009 37.0 37.0 40.0 33.0 40.0 66-67 36.984574048058235 37.0 37.0 40.0 33.0 40.0 68-69 36.76580347352211 37.0 37.0 40.0 33.0 40.0 70-71 36.50003565537591 37.0 37.0 40.0 33.0 40.0 72-73 36.26610710631212 37.0 37.0 37.0 33.0 40.0 74-75 36.019563618237186 37.0 37.0 37.0 33.0 40.0 76-77 34.227489537469914 35.0 33.0 37.0 30.0 37.0 78-79 35.60245632184397 37.0 35.0 37.0 33.0 37.0 80-81 35.74314132061071 37.0 37.0 37.0 33.0 37.0 82-83 35.68845104946314 37.0 37.0 37.0 33.0 37.0 84-85 35.2656176177896 37.0 33.0 37.0 33.0 37.0 86-87 35.35749821371098 37.0 33.0 37.0 33.0 37.0 88-89 35.36204083737962 37.0 33.0 37.0 33.0 37.0 90-91 35.30837049076794 37.0 33.0 37.0 33.0 37.0 92-93 35.23886839099486 37.0 33.0 37.0 33.0 37.0 94-95 35.19108551724028 37.0 33.0 37.0 33.0 37.0 96-97 35.15875997655789 37.0 33.0 37.0 33.0 37.0 98-99 35.12583718054505 37.0 33.0 37.0 33.0 37.0 100 35.0542591550272 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 3.0 20 32.0 21 151.0 22 632.0 23 1864.0 24 4488.0 25 9155.0 26 16239.0 27 26184.0 28 39107.0 29 55268.0 30 75556.0 31 100862.0 32 134816.0 33 184397.0 34 264211.0 35 405821.0 36 786147.0 37 2311383.0 38 3549629.0 39 143041.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.132740608322514 20.121573740151053 14.52453746386109 24.221148187665342 2 14.27895811413212 20.521611328072012 42.34782441409458 22.851606143701286 3 17.91187516209076 25.866731583129265 30.91219838786674 25.309194866913238 4 12.176003420550716 18.319141279921027 38.17543324652428 31.32942205300398 5 13.272905082015935 37.45413310740567 35.52613891838363 13.746822892194766 6 29.811537518615143 37.626162475514825 18.575499186828246 13.986800819041784 7 26.164091006177344 32.85620844425963 22.330480696234844 18.649219853328184 8 24.318718932621433 36.58126020164292 21.194272330899985 17.905748534835666 9 25.005364417853375 16.969133509631533 20.80839187331391 37.21711019920118 10-11 23.92247343318303 26.67450611592963 28.68771047632578 20.71530997456156 12-13 24.891453779435853 24.13696998935009 28.645109599372944 22.326466631841114 14-15 22.176620559803517 25.704113756241842 26.17161352316713 25.94765216078751 16-17 21.880948646119588 29.11157964471029 26.77194737493754 22.235524334232583 18-19 21.993971380892415 27.697963050383105 28.613743169924533 21.694322398799947 20-21 22.60761197079777 26.985553901529357 28.566009436869642 21.840824690803228 22-23 22.05545063600651 27.24351096261634 28.612541498994432 22.088496902382722 24-25 22.156750203009313 27.229207535281308 28.653140689431094 21.960901572278285 26-27 22.172283414473952 27.503642702889557 28.65374255204657 21.670331330589924 28-29 21.788053314743895 27.122091494966288 28.85271218505604 22.23714300523378 30-31 22.04071028111135 27.08787057353726 28.99143191760204 21.879987227749353 32-33 21.55617888819392 27.03511254460686 29.291685170585325 22.117023396613895 34-35 21.630865105689544 27.24098860918322 28.95241793891257 22.175728346214658 36-37 21.795439430260444 27.314866189556252 28.970829500315826 21.918864879867474 38-39 21.821015883244954 27.135348917974706 28.896084072058542 22.147551126721805 40-41 21.94757891436939 27.023732893226736 28.97556317170686 22.053125020697014 42-43 22.159075108748777 26.98835632241268 28.963192458002347 21.8893761108362 44-45 21.90788814369041 27.417919909444755 28.594240900350957 22.079951046513877 46-47 22.485731169900383 27.012674643551275 27.870673961227943 22.630920225320395 48-49 22.191655550460627 27.135184355329528 28.177172349827007 22.49598774438284 50-51 21.975958816550182 27.527729412787938 28.180317081055712 22.315994689606168 52-53 22.091410659409664 27.653450823555577 28.366256099166055 21.888882417868707 54-55 22.001006349350526 27.71090017789582 27.91958847823223 22.368504994521416 56-57 22.43737120486007 27.984308208815822 27.42466587120113 22.15365471512298 58-59 21.957079755825887 28.296277536382192 27.99340576445638 21.75323694333554 60-61 22.343020327314374 28.60125965251561 27.29060611674886 21.765113903421156 62-63 22.023405377495084 28.858096977206543 27.244273585196428 21.874224060101945 64-65 22.063230516269712 28.58675633885698 27.34584529236754 22.00416785250577 66-67 22.210564231780154 28.323390466382126 27.30552958112145 22.160515720716273 68-69 22.261069294219578 27.997613340682708 27.515011093261922 22.226306271835792 70-71 22.268633385860394 27.70525264550025 27.612201957190752 22.413912011448605 72-73 22.30997495953995 27.737529156887497 27.55317567517766 22.399320208394894 74-75 22.18559551385972 27.838569284991966 27.526417028734002 22.449418172414312 76-77 22.321220059161387 27.81946010173587 27.44544272887252 22.413877110230224 78-79 22.270215618809456 27.87534745565617 27.42752319923184 22.426913726302534 80-81 22.268952134345543 27.849003106944377 27.43203276249455 22.450011996215533 82-83 22.34206618128315 27.81062079507467 27.496354598915286 22.350958424726894 84-85 22.45648696007046 27.755300880555563 27.415058993596354 22.37315316577763 86-87 22.255579393918534 27.784542229791793 27.574469562833983 22.38540881345569 88-89 22.32612044577418 27.78060245966118 27.483454096633224 22.409822997931414 90-91 22.323986641727263 27.844738453182583 27.51649590508905 22.314779000001106 92-93 22.361979293597987 27.77792515683218 27.528567787218027 22.331527762351808 94-95 22.266226005230262 27.902078962416837 27.50065081047841 22.331044221874492 96-97 22.343796423226543 28.005077916763994 27.60337649046969 22.047749169539774 98-99 23.45931871674353 29.894244966944655 27.788319424411263 18.85811689190055 100 22.330066698377227 30.935347904168527 21.71992718122362 25.01465821623063 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1998.0 1 1735.0 2 2084.5 3 2908.5 4 4012.0 5 6523.5 6 8676.0 7 10244.0 8 11299.0 9 11225.5 10 10414.5 11 9656.0 12 10679.0 13 14088.0 14 21893.0 15 32487.0 16 41197.0 17 46774.5 18 48518.0 19 46745.5 20 42888.0 21 38252.0 22 35374.5 23 36444.0 24 41746.0 25 51477.0 26 64966.0 27 80384.0 28 95866.0 29 112688.5 30 129486.0 31 145803.5 32 163607.5 33 180939.0 34 199134.5 35 216295.5 36 234680.5 37 251934.0 38 263923.5 39 274747.5 40 287966.5 41 299407.5 42 306548.0 43 314334.0 44 320307.5 45 325513.5 46 334075.5 47 346537.5 48 371208.5 49 373544.5 50 353906.0 51 344452.5 52 327928.0 53 302058.5 54 274004.5 55 247837.0 56 225425.0 57 204413.0 58 182952.5 59 160611.5 60 135298.5 61 109695.5 62 86715.5 63 67285.5 64 50733.0 65 37621.5 66 28247.0 67 21416.0 68 16174.0 69 11770.5 70 8551.0 71 6277.0 72 4349.5 73 2974.5 74 2090.5 75 1378.0 76 888.0 77 560.5 78 370.0 79 236.0 80 162.0 81 116.0 82 84.5 83 59.5 84 41.0 85 29.0 86 18.0 87 15.0 88 14.0 89 12.0 90 9.0 91 6.5 92 5.5 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0012948594818490296 4 0.03318539872053085 5 0.0024417350229153133 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.083056747174116E-5 22-23 0.0 24-25 0.003361274674300194 26-27 0.04072909396643693 28-29 0.08666744686503458 30-31 0.08483511067493749 32-33 0.03834253019458772 34-35 0.002384492157194168 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.6637085295543123E-5 56-57 1.1427157917944939E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.1710375200151568E-5 72-73 0.011521677170924045 74-75 0.024868584864983667 76-77 0.003418716203098143 78-79 0.0 80-81 0.0 82-83 0.005108211095339012 84-85 0.040801309143755383 86-87 0.042266412598133817 88-89 0.010623048024703671 90-91 1.1064964938287529E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 94.0 20-21 370.0 22-23 953.0 24-25 2079.0 26-27 3542.0 28-29 6718.0 30-31 15965.0 32-33 20851.0 34-35 28555.0 36-37 41428.0 38-39 49377.0 40-41 50081.0 42-43 58950.0 44-45 69717.0 46-47 68287.0 48-49 60848.0 50-51 54530.0 52-53 53308.0 54-55 65459.0 56-57 75615.0 58-59 72132.0 60-61 73874.0 62-63 75034.0 64-65 79497.0 66-67 91147.0 68-69 66695.0 70-71 57903.0 72-73 54698.0 74-75 55559.0 76-77 55135.0 78-79 58441.0 80-81 59886.0 82-83 57354.0 84-85 57199.0 86-87 60048.0 88-89 64389.0 90-91 68086.0 92-93 72481.0 94-95 87781.0 96-97 256100.0 98-99 491525.0 100-101 5367297.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.46539160833976 #Duplication Level Percentage of deduplicated Percentage of total 1 89.55765765764848 76.54080283236556 2 7.464186578943448 12.758592580142311 3 1.7276933242274375 4.429739596026368 4 0.6017642913203618 2.0572008325443907 5 0.27387620066208335 1.1703468370894599 6 0.13762429126802242 0.7057268368825049 7 0.07323684045545745 0.43814506747782195 8 0.04467409261227289 0.30544710558841126 9 0.03061835050686575 0.23551283848236207 >10 0.0866290836531358 1.124300579913017 >50 0.0015091567094532169 0.08278555406008978 >100 4.419399604018732E-4 0.07299220085969092 >500 4.409641144024748E-5 0.021500530635785955 >1k 4.4095621176099934E-5 0.056906607932168896 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2331995065228855E-5 0.0 0.0 1.2331995065228855E-5 3 0.0 1.2331995065228855E-5 0.0 2.466399013045771E-5 1.2331995065228855E-5 4 0.0 1.2331995065228855E-5 0.0 2.466399013045771E-5 1.2331995065228855E-5 5 0.0 1.2331995065228855E-5 0.0 2.466399013045771E-5 1.2331995065228855E-5 6 0.0 2.466399013045771E-5 0.0 2.466399013045771E-5 1.2331995065228855E-5 7 0.0 2.466399013045771E-5 0.0 2.466399013045771E-5 1.2331995065228855E-5 8 0.0 3.699598519568656E-5 0.0 2.466399013045771E-5 2.466399013045771E-5 9 3.699598519568656E-5 1.603159358479751E-4 0.0 6.165997532614427E-5 4.932798026091542E-5 10-11 4.932798026091542E-5 1.603159358479751E-4 0.0 7.399197039137312E-5 4.932798026091542E-5 12-13 4.932798026091542E-5 1.7264793091320397E-4 0.0 7.399197039137312E-5 4.932798026091542E-5 14-15 4.932798026091542E-5 2.528058988371915E-4 0.0 9.865596052183084E-5 7.399197039137314E-5 16-17 4.932798026091542E-5 2.836358865002637E-4 0.0 1.4181794325013184E-4 9.24899629892164E-5 18-19 4.932798026091542E-5 3.2063187169595027E-4 0.0 1.7264793091320397E-4 1.2331995065228854E-4 20-21 4.932798026091542E-5 3.699598519568656E-4 0.0 1.7264793091320397E-4 1.2331995065228854E-4 22-23 4.932798026091542E-5 4.007898396199378E-4 0.0 2.219759111741194E-4 1.5414993831536068E-4 24-25 5.5493977793529845E-5 4.562838174134676E-4 0.0 2.651378939024204E-4 1.9731192104366168E-4 26-27 6.78259728587587E-5 4.8094780754392535E-4 0.0 3.2679786922856465E-4 1.9731192104366168E-4 28-29 7.399197039137312E-5 4.932798026091542E-4 0.0 4.994458001417687E-4 1.9731192104366168E-4 30-31 9.865596052183084E-5 5.672717730005274E-4 0.0 0.001054385578077067 1.9731192104366168E-4 32-33 1.2331995065228854E-4 5.672717730005274E-4 0.0 0.00231224907473041 2.2197591117411938E-4 34-35 1.2948594818490297E-4 6.720937310549725E-4 0.0 0.003853748457884017 2.2197591117411938E-4 36-37 1.356519457175174E-4 7.830816866420322E-4 0.0 0.006400305438853776 2.2197591117411938E-4 38-39 1.4798394078274624E-4 8.015796792398756E-4 0.0 0.01019239392141165 2.2197591117411938E-4 40-41 1.5414993831536068E-4 8.879036446964775E-4 0.0 0.014212624312676255 2.2197591117411938E-4 42-43 1.603159358479751E-4 9.310656274247786E-4 0.0 0.01791222283224491 2.281419087067338E-4 44-45 1.603159358479751E-4 0.0010482195805444528 0.0 0.021938619221042132 2.3430790623934824E-4 46-47 1.603159358479751E-4 0.0011222115509358257 0.0 0.026637109340894326 2.4047390377196265E-4 48-49 1.603159358479751E-4 0.0011222115509358257 0.0 0.030984137601387497 2.713038914350348E-4 50-51 1.603159358479751E-4 0.001282527486783801 0.0 0.0353866598396742 2.713038914350348E-4 52-53 1.603159358479751E-4 0.0012948594818490298 0.0 0.03964736413471077 3.144658741633358E-4 54-55 1.603159358479751E-4 0.0013010254793816441 0.0 0.04386490644701904 3.6379385442425125E-4 56-57 1.6648193338058954E-4 0.0013318554670447163 0.0 0.04811327874699038 3.7612584948948006E-4 58-59 1.7264793091320397E-4 0.001356519457175174 0.0 0.05254046497540754 3.884578445547089E-4 60-61 1.7264793091320397E-4 0.0013688514522404028 0.0 0.0570971371520096 3.9462384208732335E-4 62-63 1.7881392844581838E-4 0.0014366774250991615 0.0 0.06161681334341597 4.192878322177811E-4 64-65 1.849799259784328E-4 0.0016278233486102089 0.0 0.06586518564338731 4.3161982728300995E-4 66-67 2.0964391610889054E-4 0.0016401553436754376 0.0 0.07006422996309775 4.501178198808532E-4 68-69 2.0964391610889054E-4 0.001689483323936353 0.0 0.07481204806321085 4.562838174134676E-4 70-71 2.0964391610889054E-4 0.0017018153190015818 0.0 0.07936872023981291 4.8094780754392535E-4 72-73 2.0964391610889054E-4 0.0017079813165341963 0.0 0.0826182009395007 5.179437927396119E-4 74-75 2.0964391610889054E-4 0.001732645306664654 0.0 0.08542372981684027 5.179437927396119E-4 76-77 2.2197591117411938E-4 0.0018744632499147857 0.0 0.08835874464236473 5.179437927396119E-4 78-79 2.3430790623934822E-4 0.0019114592351104724 0.0 0.09025787188241 5.179437927396119E-4 80-81 2.466399013045771E-4 0.0019114592351104724 0.0 0.09091763361839973 5.487737804026841E-4 82-83 2.466399013045771E-4 0.001917625232643087 0.0 0.09144174340867196 6.042677581962138E-4 84-85 2.5897189636980595E-4 0.0019299572277083157 0.0 0.09159589334698731 6.042677581962138E-4 86-87 2.5897189636980595E-4 0.0019607872153713877 0.0 0.09172537929517222 6.042677581962138E-4 88 2.5897189636980595E-4 0.002022447190697532 0.0 0.09173771129023744 6.289317483266716E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9860 0.0 51.88081 1 GGTATCA 10785 0.0 51.656895 1 TATACAC 13360 0.0 40.457207 3 GTATCAA 19455 0.0 38.510155 1 TTATACA 14020 0.0 37.519726 2 TCAACGC 23890 0.0 30.576376 4 ATCAACG 23900 0.0 30.54595 3 CAACGCA 24310 0.0 30.022444 5 TATCAAC 24810 0.0 29.786085 2 TACACAT 18510 0.0 29.422821 5 AACGCAG 24920 0.0 29.389524 6 ACACATC 18775 0.0 27.804985 6 ACATCTC 19780 0.0 26.41377 8 ACGCAGA 28865 0.0 25.284327 7 CACATCT 20630 0.0 25.098427 7 CGCAGAG 29255 0.0 24.961815 8 ATACACA 24350 0.0 23.841572 4 GTGGTAT 5010 0.0 23.634573 1 TGGTATC 4910 0.0 23.508694 2 CATCTCC 22815 0.0 22.657415 9 >>END_MODULE