##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139277_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8151094 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.792296960383474 33.0 33.0 33.0 33.0 33.0 2 32.79401771099683 33.0 33.0 33.0 33.0 33.0 3 32.79589083379483 33.0 33.0 33.0 33.0 33.0 4 36.73340719662907 37.0 37.0 37.0 37.0 37.0 5 36.75328710477391 37.0 37.0 37.0 37.0 37.0 6 36.75882022707627 37.0 37.0 37.0 37.0 37.0 7 36.74441970611552 37.0 37.0 37.0 37.0 37.0 8 36.73887456088716 37.0 37.0 37.0 37.0 37.0 9 36.73798768607011 37.0 37.0 37.0 37.0 37.0 10-11 36.6927065863797 37.0 37.0 37.0 37.0 37.0 12-13 36.692677326503656 37.0 37.0 37.0 37.0 37.0 14-15 38.972009156071564 40.0 40.0 40.0 37.0 40.0 16-17 38.91548152922786 40.0 40.0 40.0 37.0 40.0 18-19 38.936809647882846 40.0 40.0 40.0 37.0 40.0 20-21 38.978676134988405 40.0 40.0 40.0 37.0 40.0 22-23 39.01049335440325 40.0 40.0 40.0 37.0 40.0 24-25 39.02010281339773 40.0 40.0 40.0 37.0 40.0 26-27 38.92862865074193 40.0 40.0 40.0 37.0 40.0 28-29 38.857576964136115 40.0 40.0 40.0 37.0 40.0 30-31 38.79209578119536 40.0 37.0 40.0 37.0 40.0 32-33 38.73288198921763 40.0 37.0 40.0 37.0 40.0 34-35 38.723083124092966 40.0 37.0 40.0 37.0 40.0 36-37 38.6908908973193 40.0 37.0 40.0 37.0 40.0 38-39 38.644737028168464 40.0 37.0 40.0 37.0 40.0 40-41 38.60396103002305 40.0 37.0 40.0 37.0 40.0 42-43 38.483581309386835 40.0 37.0 40.0 37.0 40.0 44-45 38.44546910876534 40.0 37.0 40.0 37.0 40.0 46-47 38.380463393585345 40.0 37.0 40.0 37.0 40.0 48-49 38.31475539227338 40.0 37.0 40.0 37.0 40.0 50-51 38.25800406199953 40.0 37.0 40.0 37.0 40.0 52-53 38.22265309751743 40.0 37.0 40.0 37.0 40.0 54-55 38.13871891215649 40.0 37.0 40.0 37.0 40.0 56-57 38.03995972965852 40.0 37.0 40.0 37.0 40.0 58-59 37.79198952848384 40.0 37.0 40.0 33.0 40.0 60-61 37.71172333815363 40.0 37.0 40.0 33.0 40.0 62-63 37.36953192297248 37.0 37.0 40.0 33.0 40.0 64-65 37.18365671100584 37.0 37.0 40.0 33.0 40.0 66-67 37.033673062369076 37.0 37.0 40.0 33.0 40.0 68-69 36.8088863505611 37.0 37.0 40.0 33.0 40.0 70-71 36.53512030282603 37.0 37.0 40.0 33.0 40.0 72-73 36.293612224704205 37.0 37.0 37.0 33.0 40.0 74-75 36.04384471569782 37.0 37.0 37.0 33.0 40.0 76-77 34.25244406977069 35.0 33.0 37.0 30.0 37.0 78-79 35.62382461572534 37.0 35.0 37.0 33.0 37.0 80-81 35.76194441800136 37.0 37.0 37.0 33.0 37.0 82-83 35.70471037288665 37.0 37.0 37.0 33.0 37.0 84-85 35.28045881257205 37.0 35.0 37.0 33.0 37.0 86-87 35.371632424565675 37.0 33.0 37.0 33.0 37.0 88-89 35.37456812129611 37.0 33.0 37.0 33.0 37.0 90-91 35.319327795228546 37.0 33.0 37.0 33.0 37.0 92-93 35.24621031072407 37.0 33.0 37.0 33.0 37.0 94-95 35.20244916622109 37.0 33.0 37.0 33.0 37.0 96-97 35.16581579019504 37.0 33.0 37.0 33.0 37.0 98-99 35.12995399593723 37.0 33.0 37.0 33.0 37.0 100 35.05976538173223 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 4.0 20 33.0 21 126.0 22 516.0 23 1553.0 24 3875.0 25 8119.0 26 15197.0 27 24280.0 28 37638.0 29 53219.0 30 72790.0 31 99257.0 32 134035.0 33 183248.0 34 261508.0 35 401571.0 36 775178.0 37 2294574.0 38 3639514.0 39 144857.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.39644322590318 20.108012495009874 14.485957345112203 24.009586933974752 2 14.412629764789855 20.70863125857707 42.135264297037914 22.743474679595156 3 18.191659710454733 25.762287958220526 30.480783433861024 25.565268897463717 4 12.335627744957906 18.201736327199537 38.520232748990004 30.94240317885255 5 13.452419101946834 37.448465661850335 35.46504694710115 13.634068289101686 6 29.9017039921267 37.62591868036364 18.79385760978833 13.678519717721327 7 26.44751735165856 32.67471826481206 22.577030764213983 18.300733619315395 8 24.283562427325705 36.68868252531501 21.20977871191278 17.817976335446506 9 25.1749519757716 17.10306616510618 21.10087308525702 36.6211087738652 10-11 24.059328723236415 26.7910356572995 28.734566182159107 20.415069437304982 12-13 24.97427952615931 24.242156942368716 28.796465848633325 21.987097682838648 14-15 22.11628893005037 25.770197227513265 26.439076766873253 25.674437075563105 16-17 21.72164865231587 29.077188902495788 27.067587491936667 22.133574953251674 18-19 21.70426448277986 27.907395007345027 28.955714410850863 21.432626099024255 20-21 22.388915389016972 27.037872118233757 28.83441517652521 21.738797316224066 22-23 22.117423742588482 27.240224702957995 28.735911205388643 21.906440349064884 24-25 22.00923910385761 27.382796103620947 28.82141080621363 21.78655398630781 26-27 21.88774888725821 27.44870115454021 28.845479434291992 21.818070523909583 28-29 21.617538095708362 27.33178219695212 29.0783008819059 21.972378825433616 30-31 22.037184149234623 27.17802479230353 28.712026581408395 22.072764477053457 32-33 22.02838639218015 27.327925832383244 28.898206742379568 21.745481033057043 34-35 22.030237367639206 27.622901392723676 28.78872040822589 21.558140831411233 36-37 21.91727844969222 27.407090507121108 28.6360806756707 22.03955036751597 38-39 21.830812736695236 27.400681433127367 28.845481612517442 21.923024217659957 40-41 22.041588787593795 27.283677137343943 28.77005248422469 21.90468159083757 42-43 22.086844354190198 27.30904307416165 28.67018065595237 21.93393191569578 44-45 22.007936090968556 27.59986834380715 28.433214435754685 21.95898112946961 46-47 22.32142124750199 27.372422142632296 27.91422975216272 22.39192685770299 48-49 22.131563557172537 27.514767700723443 28.057487568377958 22.296181173726062 50-51 22.035928876695532 27.720420297511716 28.02545099916958 22.218199826623174 52-53 22.15609212653353 27.766240265654357 28.071646540829953 22.006021066982157 54-55 22.147840367401635 27.732656267524874 27.866534364124263 22.25296900094923 56-57 22.2893700285654 27.970891683278182 27.59915483740057 22.140583450755848 58-59 22.080787264678143 28.135307760209166 27.865611878782182 21.91829309633051 60-61 22.318355708491776 28.255319840315092 27.534686516481976 21.89163793471116 62-63 22.136711911712208 28.42787693180083 27.427071693270765 22.008339463216195 64-65 22.155327161408355 28.28455169704967 27.47620409386747 22.083917047674504 66-67 22.235756857328713 28.152474055593828 27.434555345479893 22.177213741597562 68-69 22.25753825679163 27.962249572815416 27.577047014734664 22.203165155658294 70-71 22.247031587744704 27.739486106416457 27.62823757964738 22.385244726191463 72-73 22.29272060549834 27.771516013529418 27.56691710783678 22.36884627313546 74-75 22.155933310950523 27.87025486629683 27.58316179146021 22.390650031292438 76-77 22.28474667820204 27.87744043787905 27.458883429354852 22.37892945456406 78-79 22.238280351036117 27.911124010383915 27.47671901132937 22.373876627250596 80-81 22.249967574688764 27.879097734842446 27.44779303053244 22.42314165993635 82-83 22.307653276324576 27.857351256766993 27.53259535348787 22.30240011342056 84-85 22.454446540033636 27.80189663373268 27.43830638638588 22.305350439847803 86-87 22.21747117939914 27.809178396684903 27.596247751845716 22.37710267207024 88-89 22.28908130915187 27.832048957736642 27.547087550367394 22.331782182744092 90-91 22.304058086680676 27.850333859068595 27.582431302501032 22.263176751749704 92-93 22.34735522294491 27.81535929786067 27.574712013165115 22.26257346602931 94-95 22.20821329363238 27.917605288679916 27.564883312605517 22.309298105082195 96-97 22.343627310542555 27.98764809917944 27.64474424650394 22.02398034377407 98-99 23.385894059381908 29.898569276595637 27.85954789650291 18.855988767519538 100 22.290709570646413 30.946492068102433 21.699347384887545 25.06345097636361 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1857.0 1 1598.0 2 1900.0 3 2627.5 4 3677.0 5 6117.5 6 8101.0 7 9400.5 8 10282.0 9 10200.5 10 9641.5 11 9214.0 12 10199.5 13 13478.5 14 21101.0 15 31457.5 16 39974.5 17 45160.5 18 46559.0 19 44306.5 20 40089.5 21 35891.0 22 33730.0 23 35115.0 24 40638.0 25 50250.0 26 63812.5 27 79391.5 28 94897.5 29 112335.0 30 129573.0 31 146002.5 32 164835.5 33 183341.5 34 201966.0 35 219732.5 36 238503.5 37 257770.5 38 272562.0 39 284327.5 40 296621.0 41 308171.0 42 316270.0 43 323974.0 44 330493.0 45 336660.0 46 343565.0 47 350228.5 48 361624.0 49 359906.5 50 345116.0 51 332518.0 52 314678.0 53 291244.0 54 266871.5 55 243629.5 56 222407.0 57 200683.0 58 177660.5 59 155093.0 60 130775.0 61 107019.5 62 84627.5 63 64589.0 64 48120.5 65 35576.5 66 26721.5 67 20670.0 68 15918.5 69 11576.0 70 8219.0 71 5857.5 72 4155.0 73 2894.5 74 2013.5 75 1388.0 76 926.0 77 572.0 78 348.0 79 225.5 80 148.0 81 97.5 82 75.5 83 54.0 84 33.5 85 23.0 86 17.0 87 14.5 88 9.5 89 5.5 90 6.0 91 5.5 92 3.0 93 1.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0013004389349454196 4 0.03367646109835073 5 0.0026744876209254856 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.8402863338312533E-5 22-23 0.0 24-25 0.003215034581562329 26-27 0.040738087239404815 28-29 0.08873430993877689 30-31 0.08707868586904934 32-33 0.0394235151476636 34-35 0.002204048188272389 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.32029663632647E-5 56-57 9.317037834161385E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.546107590180884E-5 72-73 0.011233441935189546 74-75 0.024289806072927224 76-77 0.0032558461333629463 78-79 0.0 80-81 0.0 82-83 0.004715685219654678 84-85 0.041161829524383645 86-87 0.04302962268603742 88-89 0.010706670961606308 90-91 9.300010671762246E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 110.0 20-21 391.0 22-23 926.0 24-25 1846.0 26-27 3179.0 28-29 6017.0 30-31 14818.0 32-33 19248.0 34-35 26657.0 36-37 39121.0 38-39 46421.0 40-41 48420.0 42-43 56997.0 44-45 67553.0 46-47 66706.0 48-49 59738.0 50-51 53178.0 52-53 51921.0 54-55 58207.0 56-57 64975.0 58-59 63055.0 60-61 64184.0 62-63 64806.0 64-65 68018.0 66-67 76357.0 68-69 63409.0 70-71 58494.0 72-73 55273.0 74-75 57184.0 76-77 56876.0 78-79 59744.0 80-81 61467.0 82-83 59126.0 84-85 58828.0 86-87 62260.0 88-89 66431.0 90-91 70403.0 92-93 74611.0 94-95 91104.0 96-97 260872.0 98-99 501404.0 100-101 5470759.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.87922334116874 #Duplication Level Percentage of deduplicated Percentage of total 1 89.22614523970535 75.7344590967251 2 7.581974867662922 12.871042763189788 3 1.8262902261960299 4.6504228798525915 4 0.6592932868589899 2.238412085705497 5 0.29749465548342907 1.262555765279101 6 0.15132335540189717 0.770652532793561 7 0.07910045283025366 0.4699789501516679 8 0.050334484198213424 0.3417881540818149 9 0.031000308456939178 0.23681538946454966 >10 0.09530078479439381 1.210073053805065 >50 0.001320634269934112 0.07417354458921448 >100 3.0883333272949175E-4 0.05390073915099571 >500 6.772285276082974E-5 0.03347404195290741 >1k 4.5147956143572886E-5 0.0522510032581837 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.680487551732319E-5 0.0 1.2268291839107732E-5 0.0 3 0.0 4.907316735643093E-5 0.0 3.680487551732319E-5 0.0 4 0.0 1.1041462655196959E-4 0.0 4.907316735643093E-5 0.0 5 0.0 1.1041462655196959E-4 0.0 4.907316735643093E-5 0.0 6 0.0 1.2268291839107731E-4 0.0 6.134145919553866E-5 0.0 7 0.0 1.2268291839107731E-4 0.0 8.587804287375413E-5 0.0 8 0.0 1.3495121023018506E-4 0.0 1.2268291839107731E-4 0.0 9 0.0 1.7175608574750826E-4 0.0 1.594877939084005E-4 0.0 10-11 0.0 1.7175608574750826E-4 0.0 1.8402437758661597E-4 0.0 12-13 6.134145919553866E-6 1.7175608574750826E-4 0.0 1.962926694257237E-4 0.0 14-15 1.2268291839107732E-5 2.4536583678215463E-4 0.0 2.330975449430469E-4 0.0 16-17 1.2268291839107732E-5 2.76036566379924E-4 0.0 2.514999827017085E-4 0.0 18-19 1.2268291839107732E-5 3.1284144189724716E-4 0.0 2.699024204603701E-4 0.0 20-21 1.2268291839107732E-5 3.435121714950165E-4 0.0 2.8217071229947785E-4 0.0 22-23 1.2268291839107732E-5 3.741829010927858E-4 0.0 3.251097337363549E-4 6.134145919553866E-6 24-25 1.2268291839107732E-5 4.2939021436877065E-4 0.0 3.987194847710013E-4 1.2268291839107732E-5 26-27 1.2268291839107732E-5 4.723292358056477E-4 0.0 4.539267980469861E-4 1.2268291839107732E-5 28-29 1.2268291839107732E-5 4.907316735643093E-4 0.0 6.011463001162789E-4 1.2268291839107732E-5 30-31 1.2268291839107732E-5 5.95012154196725E-4 0.0 0.0012452316216694348 1.2268291839107732E-5 32-33 1.2268291839107732E-5 6.256828837944943E-4 0.0 0.002508865681097531 2.4536583678215464E-5 34-35 1.2268291839107732E-5 7.176950725878023E-4 0.0 0.004257097268170383 2.4536583678215464E-5 36-37 1.2268291839107732E-5 8.219755532202181E-4 0.0 0.006778231241107022 2.4536583678215464E-5 38-39 1.2268291839107732E-5 8.894511583353106E-4 0.0 0.010385109041804695 2.4536583678215464E-5 40-41 1.2268291839107732E-5 0.0010428048063241572 0.0 0.014261889262962738 2.4536583678215464E-5 42-43 1.2268291839107732E-5 0.001098012119600142 0.0 0.018322693861707397 2.4536583678215464E-5 44-45 1.2268291839107732E-5 0.0012268291839107734 0.0 0.022555254546199565 2.4536583678215464E-5 46-47 1.2268291839107732E-5 0.0013617803941409583 0.0 0.027223339590980056 2.4536583678215464E-5 48-49 1.2268291839107732E-5 0.0013924511237387277 0.0 0.03246190020627906 2.4536583678215464E-5 50-51 1.2268291839107732E-5 0.0014905974584515894 0.0 0.03748576571439367 2.4536583678215464E-5 52-53 1.2268291839107732E-5 0.001551938917647128 0.0 0.04215998490509372 4.293902143687706E-5 54-55 1.2268291839107732E-5 0.001607146230923113 0.0 0.046828069949874214 6.134145919553866E-5 56-57 1.2268291839107732E-5 0.0016439511064404362 0.0 0.05182126472839106 6.134145919553866E-5 58-59 1.2268291839107732E-5 0.001699158419716421 0.0 0.05667950829667772 6.134145919553866E-5 60-61 1.2268291839107732E-5 0.0017298291493141901 0.0 0.06187512989053985 6.134145919553866E-5 62-63 1.2268291839107732E-5 0.0017420974411532979 0.0 0.06703394660888465 6.134145919553866E-5 64-65 1.2268291839107732E-5 0.0019199876728203601 0.0 0.07157934873527405 6.134145919553866E-5 66-67 1.2268291839107732E-5 0.0019506584024181295 0.0 0.07662161668114734 6.134145919553866E-5 68-69 1.2268291839107732E-5 0.0019813291320158986 0.0 0.08178656754541169 6.134145919553866E-5 70-71 1.2268291839107732E-5 0.002005865715694114 0.0 0.08657733550858326 6.134145919553866E-5 72-73 1.2268291839107732E-5 0.002011999861613668 0.0 0.09028849378991335 7.360975103464639E-5 74-75 1.2268291839107732E-5 0.002054938883050545 0.0 0.09298751799451704 7.360975103464639E-5 76-77 1.2268291839107732E-5 0.0021408169259242993 0.0 0.09571107878279897 7.360975103464639E-5 78-79 1.2268291839107732E-5 0.002146951071843853 0.0 0.09753292012090647 7.974389695420026E-5 80-81 1.2268291839107732E-5 0.002159219363682961 0.0 0.09818927373429873 9.201218879330799E-5 82-83 1.2268291839107732E-5 0.0021898900932807303 0.0 0.0985266517598742 9.814633471286186E-5 84-85 1.2268291839107732E-5 0.0022266949687980535 0.0 0.09867387126194349 9.814633471286186E-5 86-87 1.2268291839107732E-5 0.0023187071575913615 0.0 0.09873521272113903 9.814633471286186E-5 88 1.2268291839107732E-5 0.0023800486167869 0.0 0.09874748101297813 9.814633471286186E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10640 0.0 48.867935 1 CTTATAC 6935 0.0 41.502068 1 GTATCAA 18845 0.0 36.795746 1 TATACAC 10490 0.0 30.785257 3 TCAACGC 22470 0.0 30.115885 4 ATCAACG 22550 0.0 29.990416 3 CAACGCA 23325 0.0 28.911278 5 TATCAAC 23880 0.0 28.553255 2 AACGCAG 23915 0.0 28.287184 6 TTATACA 11150 0.0 27.04237 2 ACGCAGA 27560 0.0 24.499405 7 CGCAGAG 28060 0.0 24.078108 8 GTGGTAT 5245 0.0 23.844284 1 ACACATC 12280 0.0 23.60442 6 ACATCTC 13225 0.0 22.63 8 TACACAT 14030 0.0 22.491488 5 TGGTATC 5250 0.0 21.700476 2 GTACATG 23065 0.0 20.853224 1 TACATGG 22395 0.0 20.826857 2 GCAGAGT 32805 0.0 20.647594 9 >>END_MODULE