Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139275_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10252379 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14445 | 0.0 | 52.08333 | 1 |
GTATCAA | 26490 | 0.0 | 37.378296 | 1 |
TCAACGC | 32420 | 0.0 | 29.776323 | 4 |
ATCAACG | 32480 | 0.0 | 29.708149 | 3 |
TATCAAC | 33425 | 0.0 | 29.124018 | 2 |
CAACGCA | 33220 | 0.0 | 29.04737 | 5 |
AACGCAG | 33975 | 0.0 | 28.401876 | 6 |
AGACCGA | 6935 | 0.0 | 25.227755 | 88-89 |
CGAGACC | 6955 | 0.0 | 24.986704 | 86-87 |
ACGCAGA | 39050 | 0.0 | 24.688934 | 7 |
TGGTATC | 6515 | 0.0 | 24.553171 | 2 |
GACCGAG | 7045 | 0.0 | 24.461987 | 90-91 |
GAGACCG | 6940 | 0.0 | 24.439514 | 88-89 |
ACCGAGG | 7250 | 0.0 | 24.403118 | 90-91 |
GTGGTAT | 7030 | 0.0 | 24.397173 | 1 |
ACGAGAC | 6975 | 0.0 | 24.35874 | 86-87 |
CGCAGAG | 39795 | 0.0 | 24.259336 | 8 |
CACGAGA | 7485 | 0.0 | 23.015898 | 84-85 |
CCCACGA | 7470 | 0.0 | 22.91002 | 82-83 |
TCCGAGC | 7375 | 0.0 | 22.48637 | 76-77 |