##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139274_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9668776 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.65168104008201 33.0 33.0 33.0 33.0 33.0 2 32.6417101813094 33.0 33.0 33.0 33.0 33.0 3 32.625650237424054 33.0 33.0 33.0 33.0 33.0 4 36.544402104258076 37.0 37.0 37.0 37.0 37.0 5 36.56546640443423 37.0 37.0 37.0 37.0 37.0 6 36.561290177784656 37.0 37.0 37.0 37.0 37.0 7 36.527422809257345 37.0 37.0 37.0 37.0 37.0 8 36.53022564593491 37.0 37.0 37.0 37.0 37.0 9 36.55977830079009 37.0 37.0 37.0 37.0 37.0 10-11 36.49521826754493 37.0 37.0 37.0 37.0 37.0 12-13 36.48975232232084 37.0 37.0 37.0 37.0 37.0 14-15 38.49180221984665 40.0 37.0 40.0 37.0 40.0 16-17 38.42826537712736 40.0 37.0 40.0 37.0 40.0 18-19 38.47248250450729 40.0 37.0 40.0 37.0 40.0 20-21 38.47992933567487 40.0 37.0 40.0 37.0 40.0 22-23 38.48733547465049 40.0 37.0 40.0 37.0 40.0 24-25 38.46063929807202 40.0 37.0 40.0 37.0 40.0 26-27 38.340114560568765 40.0 37.0 40.0 37.0 40.0 28-29 38.2907307684614 40.0 37.0 40.0 37.0 40.0 30-31 38.207994357407344 40.0 37.0 40.0 37.0 40.0 32-33 38.12527860975859 40.0 37.0 40.0 37.0 40.0 34-35 38.08032903988983 40.0 37.0 40.0 33.0 40.0 36-37 38.03314201746264 40.0 37.0 40.0 33.0 40.0 38-39 37.97251942566841 40.0 37.0 40.0 33.0 40.0 40-41 37.919393391928786 40.0 37.0 40.0 33.0 40.0 42-43 37.858303255788286 40.0 37.0 40.0 33.0 40.0 44-45 37.8079316009009 40.0 37.0 40.0 33.0 40.0 46-47 37.738683340265595 40.0 37.0 40.0 33.0 40.0 48-49 37.724132314928525 40.0 37.0 40.0 33.0 40.0 50-51 37.65502654225183 40.0 37.0 40.0 33.0 40.0 52-53 37.54233812393845 40.0 37.0 40.0 33.0 40.0 54-55 37.38948267152145 40.0 37.0 40.0 33.0 40.0 56-57 37.303017980257884 40.0 37.0 40.0 33.0 40.0 58-59 37.169189950456364 37.0 37.0 40.0 33.0 40.0 60-61 37.02291047633973 37.0 37.0 40.0 33.0 40.0 62-63 36.832118376281734 37.0 37.0 40.0 33.0 40.0 64-65 36.65350161018722 37.0 37.0 40.0 33.0 40.0 66-67 36.44798348914357 37.0 37.0 40.0 33.0 40.0 68-69 36.16000948903044 37.0 37.0 40.0 33.0 40.0 70-71 35.93269738038612 37.0 37.0 37.0 33.0 40.0 72-73 35.61208737254468 37.0 33.0 37.0 33.0 40.0 74-75 35.52598757550749 37.0 33.0 37.0 33.0 40.0 76-77 33.855426932823406 35.0 33.0 37.0 27.0 37.0 78-79 35.092723416811964 37.0 33.0 37.0 33.0 37.0 80-81 35.144816093460165 37.0 33.0 37.0 33.0 37.0 82-83 34.99214685287909 37.0 33.0 37.0 33.0 37.0 84-85 34.8629775134832 37.0 33.0 37.0 33.0 37.0 86-87 34.76726511052244 37.0 33.0 37.0 33.0 37.0 88-89 34.65341683164444 37.0 33.0 37.0 33.0 37.0 90-91 34.55912100016704 37.0 33.0 37.0 33.0 37.0 92-93 34.529048696848115 37.0 33.0 37.0 33.0 37.0 94-95 34.53572798105422 37.0 33.0 37.0 33.0 37.0 96-97 34.52255516340416 37.0 33.0 37.0 33.0 37.0 98-99 34.525597526927214 37.0 33.0 37.0 33.0 37.0 100 34.52059795687008 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 0.0 15 1.0 16 0.0 17 2.0 18 7.0 19 11.0 20 81.0 21 362.0 22 1257.0 23 3552.0 24 8387.0 25 16704.0 26 29104.0 27 46338.0 28 69902.0 29 99007.0 30 135444.0 31 183769.0 32 247282.0 33 336616.0 34 469765.0 35 686846.0 36 1213034.0 37 2879241.0 38 3148495.0 39 93567.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.776800289922946 19.923514620671735 14.465419407792671 22.83426568161265 2 15.014506489756304 20.986968774537747 41.923714025436105 22.07481071026984 3 18.440110723425594 26.781931859834174 30.249682069374657 24.528275347365582 4 12.450676280017243 18.008473875079947 38.70661601840812 30.83423382649469 5 13.151168255423437 37.99164444392961 35.08917778217222 13.768009518474727 6 29.55474405446977 37.80994616071362 18.681237418262665 13.954072366553946 7 26.65677641099556 33.08721807186349 22.616264975008214 17.63974054213274 8 24.817257117136645 36.34306969155144 20.752781944684624 18.08689124662729 9 26.365285253021405 16.64375612733247 20.896707925633123 36.094250694013006 10-11 24.538663456556545 26.920016864868867 28.161243701854232 20.380075976720356 12-13 25.67277394978351 24.77127746468742 28.434680302477368 21.121268283051702 14-15 22.744890110339053 25.711921815789644 26.828607873299415 24.714580200571888 16-17 21.477853039516067 28.957564018444526 27.396952830430653 22.167630111608748 18-19 21.469299733492637 27.51661120290717 29.999743504245004 21.014345559355185 20-21 22.676040612386945 26.538994776762863 29.969836362772256 20.815128248077933 22-23 22.2967638910927 26.56204778063796 29.850910226097525 21.29027810217181 24-25 21.843655804934254 26.841261245852593 30.02507031188039 21.29001263733276 26-27 21.675822756649254 26.972834845338223 29.992672643462402 21.35866975455012 28-29 21.503604825824237 26.96448661865204 30.096297520818666 21.435611034705058 30-31 21.91202275046217 26.890014020406916 29.904640073221024 21.293323155909892 32-33 21.644811651367167 27.15370767346975 29.77690754558362 21.424573129579464 34-35 21.80744527997235 27.112274050555236 29.814843765001726 21.26543690447069 36-37 21.78897314859371 27.05662264047864 29.692279815668627 21.462124395259025 38-39 21.56944445250753 27.276440821956605 29.679937204362318 21.47417752117355 40-41 21.866815442834316 27.085053371642026 29.59003008229009 21.458101103233567 42-43 21.799903607831137 27.204139618377322 29.219842843331946 21.776113930459598 44-45 21.884872435513838 27.408003850471687 28.97149390509066 21.73562980892381 46-47 22.09966330808473 27.382507773357588 28.430106479421557 22.087722439136122 48-49 21.987267211939194 27.657160784397256 28.25542188509517 22.100150118568376 50-51 22.044355682942353 27.80739958907975 27.994303217292032 22.153941510685865 52-53 22.18368729707327 27.698505501490704 27.940896599714044 22.176910601721982 54-55 22.261063081085783 27.610381542386797 27.94099803908803 22.187557337439394 56-57 22.154778280288514 27.821010534361925 27.821917234358423 22.202293950991145 58-59 22.056984509128434 27.827561116365413 27.928292771266257 22.1871616032399 60-61 22.259092626673922 27.956573830078906 27.76366183027611 22.02067171297106 62-63 22.143606947880055 27.909804558905453 27.845744928470182 22.100843564744306 64-65 22.131652861893894 27.884570911802243 27.77992786870978 22.20384835759409 66-67 22.252126883417475 27.938510580220182 27.51357803526076 22.295784501101583 68-69 22.279377840022068 27.911841471067017 27.620131986189044 22.188648702721874 70-71 22.220869764441606 27.654407354974424 27.758234864945823 22.36648801563814 72-73 22.358336580560536 27.65111580543518 27.55501396941981 22.43553364458447 74-75 22.096755980908483 27.92532465280414 27.514556752290282 22.46336261399709 76-77 22.276786367957897 27.737319426891972 27.595523054233407 22.39037115091673 78-79 22.372683887802594 27.65176889588062 27.479796007035773 22.495751209281014 80-81 22.271478809291455 27.840599231503543 27.41796550811108 22.46995645109392 82-83 22.442074560132852 27.67609471303923 27.558606840835363 22.323223885992554 84-85 22.44295459705689 27.657701739215966 27.45310593492648 22.44623772880066 86-87 22.264795098879812 27.729167248706137 27.676605333764158 22.329432318649893 88-89 22.42666048787066 27.628943951656364 27.549969921565243 22.394425638907734 90-91 22.477430639618177 27.619129100762713 27.594447175482266 22.308993084136848 92-93 22.549662906794694 27.57214329898759 27.621776909609487 22.256416884608235 94-95 22.376831336039167 27.47951879635302 27.682825936153094 22.46082393145472 96-97 22.489943838546644 27.636247680099746 27.774424108743013 22.0993843726106 98-99 23.52825887449237 29.51676910573729 27.96931535402188 18.98565666574847 100 22.542800268018667 30.488099473381386 21.856567718065705 25.112532540534243 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4358.0 1 3519.5 2 4223.0 3 6117.0 4 8006.5 5 12981.5 6 17598.5 7 21720.5 8 25740.5 9 26731.5 10 24298.0 11 20786.5 12 21088.0 13 26908.5 14 42440.5 15 64854.0 16 83391.5 17 93878.0 18 95141.5 19 87601.5 20 75067.0 21 61434.0 22 50412.0 23 45603.0 24 47693.0 25 56111.5 26 69824.0 27 85871.0 28 102066.5 29 120637.0 30 141025.5 31 162037.5 32 189260.5 33 219357.0 34 247418.5 35 273439.5 36 302971.5 37 329133.0 38 343668.0 39 354033.5 40 362476.0 41 367471.0 42 368382.0 43 374839.5 44 381568.0 45 384899.5 46 385862.0 47 384922.5 48 387081.0 49 385890.5 50 380363.5 51 370393.0 52 356164.0 53 340071.5 54 324142.0 55 304518.0 56 280783.0 57 254994.0 58 228543.5 59 200234.0 60 169056.5 61 139244.0 62 110436.5 63 84798.0 64 64256.5 65 48089.5 66 36073.0 67 27671.0 68 21187.0 69 14828.0 70 9761.0 71 6878.5 72 4822.5 73 3332.0 74 2269.5 75 1526.5 76 994.0 77 638.5 78 434.0 79 301.0 80 212.5 81 146.5 82 106.5 83 82.0 84 67.0 85 53.0 86 42.0 87 28.5 88 12.5 89 5.5 90 3.5 91 3.5 92 3.5 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 9.308313689343926E-5 10-11 0.0016186123248692493 12-13 2.0168012993578504E-4 14-15 0.0012721362042103365 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 226.0 20-21 670.0 22-23 1445.0 24-25 5357.0 26-27 5070.0 28-29 9472.0 30-31 24840.0 32-33 30306.0 34-35 41210.0 36-37 58939.0 38-39 70893.0 40-41 75803.0 42-43 90928.0 44-45 110886.0 46-47 104920.0 48-49 90937.0 50-51 76415.0 52-53 67461.0 54-55 70649.0 56-57 76797.0 58-59 76543.0 60-61 75425.0 62-63 74219.0 64-65 77604.0 66-67 83741.0 68-69 84755.0 70-71 83436.0 72-73 78961.0 74-75 79629.0 76-77 78638.0 78-79 85051.0 80-81 87994.0 82-83 84548.0 84-85 84573.0 86-87 89037.0 88-89 95075.0 90-91 99816.0 92-93 104914.0 94-95 120440.0 96-97 300345.0 98-99 563475.0 100-101 6147333.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.98766228460359 #Duplication Level Percentage of deduplicated Percentage of total 1 89.6639323983038 76.2032800577657 2 7.293787547217125 12.397639056770721 3 1.727370772149702 4.404156114712615 4 0.6178246603388028 2.100298943358964 5 0.2710727489386651 1.1518919620679202 6 0.13996977751407452 0.7137422508850358 7 0.08486594849417978 0.504879099906014 8 0.04796196463362119 0.3260940202230639 9 0.0370273401539461 0.2832180372270641 >10 0.11297284157349799 1.514873685487975 >50 0.0023826291079598193 0.13815927994339416 >100 6.53091583954719E-4 0.09030324130513614 >500 5.942842696393996E-5 0.035842610797741425 >1k 1.1885156373271892E-4 0.1356216395487028 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0342570765937694E-5 2 0.0 2.0685141531875388E-5 0.0 2.0685141531875388E-5 1.0342570765937694E-5 3 0.0 2.0685141531875388E-5 0.0 2.0685141531875388E-5 1.0342570765937694E-5 4 0.0 6.205542459562617E-5 0.0 3.1027712297813085E-5 1.0342570765937694E-5 5 1.0342570765937694E-5 6.205542459562617E-5 0.0 3.1027712297813085E-5 1.0342570765937694E-5 6 1.0342570765937694E-5 6.205542459562617E-5 0.0 3.1027712297813085E-5 2.0685141531875388E-5 7 1.0342570765937694E-5 7.239799536156386E-5 0.0 5.171285382968847E-5 2.0685141531875388E-5 8 1.0342570765937694E-5 7.239799536156386E-5 0.0 5.171285382968847E-5 2.0685141531875388E-5 9 1.0342570765937694E-5 1.5513856148906543E-4 0.0 8.274056612750155E-5 3.1027712297813085E-5 10-11 1.0342570765937694E-5 1.5513856148906543E-4 0.0 1.2928213457422116E-4 3.1027712297813085E-5 12-13 1.0342570765937694E-5 1.5513856148906543E-4 0.0 1.551385614890654E-4 3.1027712297813085E-5 14-15 1.0342570765937694E-5 2.068514153187539E-4 0.0 1.8099498840390966E-4 3.619899768078193E-5 16-17 1.5513856148906543E-5 2.171939860846916E-4 0.0 2.2753655685062927E-4 4.1370283063750775E-5 18-19 2.0685141531875388E-5 2.3270784223359815E-4 0.0 7.601789512964206E-4 4.1370283063750775E-5 20-21 2.0685141531875388E-5 2.585642691484424E-4 0.0 9.722016519981434E-4 4.1370283063750775E-5 22-23 4.1370283063750775E-5 2.740781252973489E-4 0.0 0.001623783610252218 5.688413921265732E-5 24-25 4.1370283063750775E-5 3.1027712297813085E-4 0.0 0.003516474060418816 6.205542459562617E-5 26-27 4.1370283063750775E-5 3.361335498929751E-4 0.0 0.008279227898133124 6.205542459562617E-5 28-29 4.1370283063750775E-5 3.619899768078193E-4 0.0 0.030174450209623224 6.722670997859502E-5 30-31 4.1370283063750775E-5 4.2921668678641437E-4 0.0 0.04282341425636503 7.75692807445327E-5 32-33 4.1370283063750775E-5 4.343879721693832E-4 0.0 0.04966502481803281 8.274056612750155E-5 34-35 4.1370283063750775E-5 5.222998236798535E-4 0.0 0.057240957904082165 8.274056612750155E-5 36-37 4.1370283063750775E-5 5.791839628925109E-4 0.0 0.06856090160740097 8.274056612750155E-5 38-39 4.1370283063750775E-5 5.998691044243863E-4 0.0 0.09519819261507351 9.308313689343926E-5 40-41 4.1370283063750775E-5 6.722670997859502E-4 0.0 0.1229731664069992 9.308313689343926E-5 42-43 4.1370283063750775E-5 6.981235267007945E-4 0.0 0.1403693704353064 9.308313689343926E-5 44-45 4.1370283063750775E-5 7.860353782112649E-4 0.0 0.1609148872618416 9.308313689343926E-5 46-47 4.1370283063750775E-5 8.429195174239222E-4 0.0 0.18074159542014417 9.308313689343926E-5 48-49 4.1370283063750775E-5 8.532620881898597E-4 0.0 0.2000460037547669 1.0342570765937695E-4 50-51 4.1370283063750775E-5 9.360026543173614E-4 0.0 0.21676994068328814 1.0342570765937695E-4 52-53 5.171285382968847E-5 9.515165104662679E-4 0.0 0.2561027373061492 1.0859699304234578E-4 54-55 5.171285382968847E-5 9.566877958492367E-4 0.0 0.29890029513559935 1.1376827842531464E-4 56-57 5.171285382968847E-5 9.82544222764081E-4 0.0 0.3423494349233036 1.1893956380828349E-4 58-59 5.171285382968847E-5 9.82544222764081E-4 0.0 0.37469582499377374 1.2411084919125234E-4 60-61 5.171285382968847E-5 9.877155081470497E-4 0.0 0.3997920729573216 1.2411084919125234E-4 62-63 5.171285382968847E-5 0.0010032293642959565 0.0 0.41765886395547897 1.3445341995719004E-4 64-65 5.171285382968847E-5 0.0010652847888915826 0.0 0.4230163156122347 1.3445341995719004E-4 66-67 5.171285382968847E-5 0.0010704560742745514 0.0 0.42798074957988474 1.3445341995719004E-4 68-69 6.205542459562617E-5 0.001085969930423458 0.0 0.4331882339605344 1.3445341995719004E-4 70-71 6.205542459562617E-5 0.0011118263573383022 0.0 0.43789927494441905 1.3445341995719004E-4 72-73 6.205542459562617E-5 0.0011273402134872087 0.0 0.44168465584475225 1.3445341995719004E-4 74-75 6.205542459562617E-5 0.001179053067316897 0.0 0.444539205376151 1.3445341995719004E-4 76-77 6.205542459562617E-5 0.001220423350380648 0.0 0.4471351906384014 1.3445341995719004E-4 78-79 7.239799536156386E-5 0.0012411084919125234 0.0 0.4490071959470361 1.3445341995719004E-4 80-81 7.239799536156386E-5 0.0012411084919125234 0.0 0.44958120862454565 1.3962470534015887E-4 82-83 7.239799536156386E-5 0.0012411084919125234 0.0 0.45001559659671503 1.5513856148906543E-4 84-85 7.239799536156386E-5 0.0012411084919125234 0.0 0.4502586470097146 1.5513856148906543E-4 86-87 7.239799536156386E-5 0.0012514510626784612 0.0 0.4503672440027569 1.5513856148906543E-4 88 7.239799536156386E-5 0.001354876770337838 0.0 0.45037758657352284 1.5513856148906543E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19250 0.0 58.879494 1 GTATCAA 37575 0.0 39.468273 1 GTGGTAT 7375 0.0 30.440117 1 TCAACGC 48200 0.0 30.40994 4 TGGTATC 7050 0.0 30.409533 2 ATCAACG 48500 0.0 30.247892 3 TATCAAC 48780 0.0 30.194992 2 CAACGCA 49420 0.0 29.668673 5 AACGCAG 50705 0.0 28.941711 6 ACGCAGA 57700 0.0 25.389294 7 CGCAGAG 58570 0.0 25.055437 8 GCAGAGT 65035 0.0 22.461447 9 GTACATG 47675 0.0 21.989498 1 TACATGG 48060 0.0 21.497843 2 GAGTACT 38365 0.0 21.024403 12-13 ACATGGG 48745 0.0 20.832937 3 ACCGAAC 1475 0.0 20.56078 8 CAGAGTA 63895 0.0 20.1955 10-11 GTACTTT 41020 0.0 19.602709 14-15 CATGGGG 30920 0.0 19.234396 4 >>END_MODULE