##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139273_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10471469 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61833139170827 33.0 33.0 33.0 33.0 33.0 2 32.608647936598004 33.0 33.0 33.0 33.0 33.0 3 32.588268083494306 33.0 33.0 33.0 33.0 33.0 4 36.49851716125025 37.0 37.0 37.0 37.0 37.0 5 36.52586136672897 37.0 37.0 37.0 37.0 37.0 6 36.528938585407644 37.0 37.0 37.0 37.0 37.0 7 36.4939363330971 37.0 37.0 37.0 37.0 37.0 8 36.4994113051378 37.0 37.0 37.0 37.0 37.0 9 36.526774610133494 37.0 37.0 37.0 37.0 37.0 10-11 36.46124106369412 37.0 37.0 37.0 37.0 37.0 12-13 36.45275710599917 37.0 37.0 37.0 37.0 37.0 14-15 38.384766167955995 40.0 37.0 40.0 37.0 40.0 16-17 38.315326770293645 40.0 37.0 40.0 37.0 40.0 18-19 38.372788908604896 40.0 37.0 40.0 37.0 40.0 20-21 38.39666405231518 40.0 37.0 40.0 37.0 40.0 22-23 38.40515020895256 40.0 37.0 40.0 37.0 40.0 24-25 38.373495144667956 40.0 37.0 40.0 37.0 40.0 26-27 38.24022277736363 40.0 37.0 40.0 37.0 40.0 28-29 38.17587751268036 40.0 37.0 40.0 37.0 40.0 30-31 38.08339581832322 40.0 37.0 40.0 35.0 40.0 32-33 37.99322176779353 40.0 37.0 40.0 33.0 40.0 34-35 37.93976220292974 40.0 37.0 40.0 33.0 40.0 36-37 37.88701830389611 40.0 37.0 40.0 33.0 40.0 38-39 37.817928944266285 40.0 37.0 40.0 33.0 40.0 40-41 37.778962317644705 40.0 37.0 40.0 33.0 40.0 42-43 37.71812118069276 40.0 37.0 40.0 33.0 40.0 44-45 37.66175362411864 40.0 37.0 40.0 33.0 40.0 46-47 37.58839940076393 40.0 37.0 40.0 33.0 40.0 48-49 37.57305846954611 40.0 37.0 40.0 33.0 40.0 50-51 37.49070990911177 40.0 37.0 40.0 33.0 40.0 52-53 37.38770077564058 40.0 37.0 40.0 33.0 40.0 54-55 37.24255091160729 40.0 37.0 40.0 33.0 40.0 56-57 37.16234779758861 37.0 37.0 40.0 33.0 40.0 58-59 37.038877980745895 37.0 37.0 40.0 33.0 40.0 60-61 36.906442403293056 37.0 37.0 40.0 33.0 40.0 62-63 36.73601866873081 37.0 37.0 40.0 33.0 40.0 64-65 36.58746508133104 37.0 37.0 40.0 33.0 40.0 66-67 36.40523764908362 37.0 37.0 40.0 33.0 40.0 68-69 36.14416129203781 37.0 37.0 40.0 33.0 40.0 70-71 35.929767760434885 37.0 37.0 38.5 33.0 40.0 72-73 35.62191608545665 37.0 33.0 37.0 33.0 40.0 74-75 35.545310039225285 37.0 33.0 37.0 33.0 40.0 76-77 33.8578927536214 35.0 33.0 37.0 27.0 37.0 78-79 35.1014877255927 37.0 33.0 37.0 33.0 37.0 80-81 35.14313827168236 37.0 33.0 37.0 33.0 37.0 82-83 34.99193296351511 37.0 33.0 37.0 33.0 37.0 84-85 34.86571449553146 37.0 33.0 37.0 33.0 37.0 86-87 34.76076193164887 37.0 33.0 37.0 33.0 37.0 88-89 34.64749593147933 37.0 33.0 37.0 33.0 37.0 90-91 34.548898004504366 37.0 33.0 37.0 33.0 37.0 92-93 34.51879798026996 37.0 33.0 37.0 33.0 37.0 94-95 34.52592648639201 37.0 33.0 37.0 33.0 37.0 96-97 34.51672674993176 37.0 33.0 37.0 33.0 37.0 98-99 34.53485808229865 37.0 33.0 37.0 33.0 37.0 100 34.5306890778755 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 3.0 18 10.0 19 23.0 20 98.0 21 484.0 22 1674.0 23 4445.0 24 10338.0 25 20005.0 26 34017.0 27 54258.0 28 79962.0 29 113352.0 30 155444.0 31 209167.0 32 279564.0 33 377489.0 34 524521.0 35 767806.0 36 1350040.0 37 3060147.0 38 3322093.0 39 106528.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.05111345886618 20.21241718807552 14.556906963101357 22.17956238995694 2 14.75205627787276 21.173963271055857 42.46769961311063 21.60628083796075 3 18.470292945526552 27.68321235540114 30.430372281100198 23.41612241797211 4 12.20234715874153 18.476729482749747 38.43343278770151 30.88749057080721 5 12.736847141504215 38.64763387066323 34.73923286217053 13.876286125662023 6 28.469138379724946 37.918872700668835 19.042466725537743 14.569522194068474 7 25.922676178480785 33.96140503304741 22.40832685461801 17.707591933853788 8 24.867303718322614 36.102699630777686 20.886009403265195 18.143987247634502 9 26.459623129665005 16.629793401164097 20.878086355351066 36.03249711381983 10-11 24.39511365630992 27.17834814492099 27.697538396834165 20.728999801934926 12-13 25.798342311397622 25.078317726450056 28.383080353357055 20.74025960879527 14-15 22.83416133222039 25.93290317787219 26.974981832537896 24.25795365736952 16-17 21.060230422302737 29.474508304422237 27.45466753518537 22.01059373808966 18-19 21.04134100000678 27.57618821198821 30.539568994569912 20.842901793435097 20-21 22.586914677570384 26.36633210916389 30.459218731272763 20.58753448199296 22-23 22.28988049495235 26.553082334719956 30.30060215751301 20.856435012814686 24-25 21.640537817569903 26.896997723274556 30.53435096271317 20.928113496442368 26-27 21.491761974117132 27.03738284971547 30.51760670309871 20.953248473068687 28-29 21.106745953062322 26.976844129423572 30.620013454162542 21.296396463351563 30-31 21.561665935149545 27.015070977281002 30.51761040040095 20.905652687168498 32-33 21.49021344254012 27.030919534800148 30.547809918945973 20.931057103713755 34-35 21.161209754275028 27.155848715438296 30.732327129800506 20.95061440048617 36-37 21.359149725686112 27.25680244145932 30.293702960666774 21.090344872187792 38-39 21.170725019833075 27.239802894470433 30.356663889269974 21.232808196426518 40-41 21.353484377181093 27.143923435730837 30.27482280220682 21.227769384881253 42-43 21.447784707162 27.249065046737563 29.966893237534997 21.336257008565433 44-45 21.447930719387635 27.572699957254716 29.472704894261888 21.50666442909576 46-47 21.83115902595354 27.586414118160008 28.707687940071185 21.87473891581527 48-49 21.78957287023939 27.825944293333638 28.440388126880613 21.94409470954636 50-51 21.6822627385485 28.04353673962398 28.317818936969424 21.956381584858097 52-53 21.754884394661993 28.067184056992602 28.334335548426527 21.84359599991888 54-55 21.75496460767575 28.033059816287654 28.15048871198684 22.06148686404976 56-57 21.955772312811302 28.19594514972711 27.851567616722427 21.996714920739162 58-59 21.625298256198217 28.3131573144925 28.09678259750448 21.964761831804807 60-61 22.028768186689998 28.426294003231963 27.924570057513225 21.620367752564817 62-63 21.620147158179147 28.515971606655537 27.89963467505208 21.964246560113228 64-65 21.639322845801917 28.437804486398257 27.901167826021666 22.021704841778163 66-67 21.772369754720152 28.31458639690128 28.021398414588848 21.89164543378972 68-69 21.829597950673268 28.422399891060728 27.883381351798292 21.86462080646771 70-71 21.746681972273304 28.22362330015773 27.72878598916814 22.30090873840082 72-73 21.833689778651287 28.16671110266535 27.714439194561223 22.28515992412214 74-75 21.782890303288955 28.2946936092637 27.89949960829482 22.022916479152528 76-77 21.90616663778177 27.931906210793038 27.788554932026045 22.373372219399148 78-79 21.923616021761553 27.89840782174442 27.55783689284611 22.620139263647918 80-81 22.126630751519542 28.18324888713185 27.550777955749332 22.139342405599276 82-83 22.23875025339893 27.77675875150306 27.710876626456976 22.273614368641027 84-85 22.039097548806524 27.731182397373015 27.66775373150181 22.561966322318654 86-87 21.913912745036434 27.988072353021476 27.768673931752474 22.329340970189616 88-89 22.31724276168167 27.881931646917373 27.67852246233798 22.122303129062978 90-91 22.384993780885218 27.78464953034797 27.737177439501696 22.093179249265113 92-93 22.073644792231605 27.427266857777433 27.804984375403528 22.694103974587435 94-95 22.262777841923658 27.74495822140228 27.891736615471242 22.10052732120282 96-97 22.63340778549755 27.56912430431633 27.924131131783913 21.873336778402212 98-99 23.193263953026918 29.65284421691758 28.28496077683269 18.868931053222813 100 22.026415923422768 30.648983797670446 22.224496057224677 25.100104221682106 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3586.0 1 3322.5 2 5219.5 3 7824.5 4 10787.5 5 18742.0 6 25621.5 7 30535.5 8 34176.0 9 33761.0 10 30027.0 11 25385.5 12 26124.5 13 35013.0 14 58145.5 15 91606.0 16 120082.0 17 137268.5 18 140013.5 19 128793.5 20 110299.0 21 89511.5 22 72568.5 23 64957.0 24 67525.5 25 78542.0 26 94853.0 27 113885.0 28 134633.0 29 158404.0 30 182750.5 31 206501.0 32 231175.0 33 254248.5 34 277047.5 35 298668.5 36 319041.5 37 337544.5 38 351125.0 39 361336.0 40 370310.0 41 377574.5 42 383736.5 43 391983.5 44 401984.0 45 409202.5 46 411072.5 47 412606.0 48 415215.5 49 419646.5 50 425249.5 51 420980.5 52 401079.0 53 382217.5 54 365846.5 55 339157.5 56 308290.0 57 275623.5 58 242263.0 59 211328.0 60 180143.5 61 147386.0 62 115148.5 63 88299.0 64 66676.5 65 49436.5 66 37063.0 67 27712.0 68 20420.5 69 13955.0 70 9237.5 71 6318.0 72 4165.5 73 2748.5 74 1878.0 75 1304.5 76 856.5 77 538.0 78 375.0 79 261.0 80 183.0 81 122.0 82 81.5 83 60.0 84 45.5 85 31.5 86 23.0 87 17.5 88 12.5 89 8.0 90 3.5 91 2.0 92 2.5 93 3.5 94 3.0 95 2.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.527961358621221E-4 10-11 0.0015566106340953692 12-13 2.0054492831903529E-4 14-15 0.0013226415510564945 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 265.0 20-21 851.0 22-23 1767.0 24-25 5322.0 26-27 6345.0 28-29 12661.0 30-31 30931.0 32-33 37953.0 34-35 52648.0 36-37 74401.0 38-39 90635.0 40-41 101338.0 42-43 124715.0 44-45 152143.0 46-47 141992.0 48-49 122053.0 50-51 100181.0 52-53 88760.0 54-55 96571.0 56-57 105536.0 58-59 67927.0 60-61 111779.0 62-63 107310.0 64-65 112666.0 66-67 119853.0 68-69 111510.0 70-71 110893.0 72-73 102445.0 74-75 102123.0 76-77 102280.0 78-79 109617.0 80-81 112823.0 82-83 106858.0 84-85 104750.0 86-87 109312.0 88-89 117631.0 90-91 123538.0 92-93 124946.0 94-95 135012.0 96-97 357886.0 98-99 565108.0 100-101 6108134.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.68721710951594 #Duplication Level Percentage of deduplicated Percentage of total 1 87.96071128817553 72.7322643139282 2 8.215668676946779 13.586615591810958 3 2.104557213583632 5.220599377169631 4 0.793332392312214 2.6239379105252687 5 0.36898004621259 1.5254966595129829 6 0.1943186441017764 0.9640600747962207 7 0.10865426748573938 0.6289023303828126 8 0.07201173152142155 0.4763559742995166 9 0.045161580451439184 0.336085686701732 >10 0.13339555222802296 1.6744048598210743 >50 0.002696949536384884 0.14232759322750677 >100 4.717161229658093E-4 0.05892873522084683 >500 1.9970837475496748E-5 0.010766690991753074 >1k 1.997048392715288E-5 0.019254201611508426 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 9.549758491382632E-6 0.0 0.0 0.0 0.0 3 9.549758491382632E-6 0.0 0.0 9.549758491382632E-6 0.0 4 9.549758491382632E-6 4.7748792456913164E-5 0.0 1.9099516982765264E-5 0.0 5 9.549758491382632E-6 4.7748792456913164E-5 0.0 1.9099516982765264E-5 0.0 6 9.549758491382632E-6 4.7748792456913164E-5 0.0 3.819903396553053E-5 0.0 7 9.549758491382632E-6 4.7748792456913164E-5 0.0 3.819903396553053E-5 0.0 8 9.549758491382632E-6 6.684830943967842E-5 0.0 3.819903396553053E-5 0.0 9 9.549758491382632E-6 1.2414686038797422E-4 0.0 6.684830943967842E-5 0.0 10-11 1.9099516982765264E-5 1.2414686038797422E-4 0.0 1.0982222265090027E-4 0.0 12-13 1.9099516982765264E-5 1.2414686038797422E-4 0.0 1.5757101510781342E-4 0.0 14-15 1.9099516982765264E-5 2.1009468681041792E-4 0.0 1.7189565284488737E-4 2.3874396228456582E-5 16-17 2.8649275474147897E-5 2.1009468681041792E-4 0.0 2.1964444530180055E-4 4.297391321122185E-5 18-19 2.8649275474147897E-5 2.2441932454749186E-4 0.0 2.960425132328616E-4 6.684830943967842E-5 20-21 2.8649275474147897E-5 2.387439622845658E-4 0.0 4.67938166077749E-4 6.684830943967842E-5 22-23 2.8649275474147897E-5 2.9126763398717027E-4 0.0 0.0010600231925434723 7.162318868536974E-5 24-25 2.8649275474147897E-5 3.008173924785529E-4 0.0 0.0027742048417466547 7.639806793106105E-5 26-27 2.8649275474147897E-5 3.055922717242442E-4 0.0 0.0066418570307566205 8.594782642244368E-5 28-29 3.342415471983921E-5 3.055922717242442E-4 0.0 0.02657220300227217 8.594782642244368E-5 30-31 4.7748792456913164E-5 3.342415471983921E-4 0.0 0.03781704362587522 8.594782642244368E-5 32-33 4.7748792456913164E-5 3.342415471983921E-4 0.0 0.04180406779602747 8.594782642244368E-5 34-35 4.7748792456913164E-5 3.6289082267254005E-4 0.0 0.04709940887949914 8.594782642244368E-5 36-37 4.7748792456913164E-5 3.9154009814668794E-4 0.0 0.05556049490286415 8.594782642244368E-5 38-39 5.7298550948295794E-5 4.392888906036011E-4 0.0 0.08016067277666582 8.594782642244368E-5 40-41 6.684830943967842E-5 4.8703768306051424E-4 0.0 0.10656098012609311 8.594782642244368E-5 42-43 6.684830943967842E-5 4.965874415518969E-4 0.0 0.12089039274241274 1.0027246415951764E-4 44-45 6.684830943967842E-5 5.586608717458839E-4 0.0 0.13985621310629864 1.1459710189659159E-4 46-47 6.684830943967842E-5 6.111845434484884E-4 0.0 0.15769038708895572 1.193719811422829E-4 48-49 6.684830943967842E-5 6.111845434484884E-4 0.0 0.1756630325697378 1.527961358621221E-4 50-51 6.684830943967842E-5 6.828077321338582E-4 0.0 0.19390784616752435 1.527961358621221E-4 52-53 6.684830943967842E-5 6.875826113795495E-4 0.0 0.24024804924695858 1.527961358621221E-4 54-55 6.684830943967842E-5 6.923574906252407E-4 0.0 0.2934879528364167 1.527961358621221E-4 56-57 6.684830943967842E-5 6.971323698709321E-4 0.0 0.3469952496636336 1.527961358621221E-4 58-59 6.684830943967842E-5 6.971323698709321E-4 0.0 0.5791021297966885 1.527961358621221E-4 60-61 6.684830943967842E-5 7.11457007608006E-4 0.0 0.7852766407463938 1.6234589435350474E-4 62-63 6.684830943967842E-5 7.210067660993887E-4 0.0 0.7930787934338535 1.7189565284488737E-4 64-65 6.684830943967842E-5 7.830801962933759E-4 0.0 0.7992670369362694 1.7189565284488737E-4 66-67 6.684830943967842E-5 7.974048340304498E-4 0.0 0.8050541905820473 1.7189565284488737E-4 68-69 6.684830943967842E-5 8.16504351013215E-4 0.0 0.810936841812739 1.7189565284488737E-4 70-71 6.684830943967842E-5 8.30828988750289E-4 0.0 0.8166332727528487 1.7189565284488737E-4 72-73 6.684830943967842E-5 8.30828988750289E-4 0.0 0.8209784128664278 1.7189565284488737E-4 74-75 6.684830943967842E-5 8.499285057330543E-4 0.0 0.824516598387485 1.7189565284488737E-4 76-77 7.162318868536974E-5 8.642531434701283E-4 0.0 0.8276298196556757 1.7189565284488737E-4 78-79 7.639806793106105E-5 8.690280227158196E-4 0.0 0.8296209443011291 1.7189565284488737E-4 80-81 7.639806793106105E-5 8.690280227158196E-4 0.0 0.830380150101194 1.7189565284488737E-4 82-83 7.639806793106105E-5 8.690280227158196E-4 0.0 0.8308671877842545 1.7189565284488737E-4 84-85 7.639806793106105E-5 8.690280227158196E-4 0.0 0.8310963819880477 1.7189565284488737E-4 86-87 8.117294717675237E-5 8.738029019615108E-4 0.0 0.8311966544522073 1.7189565284488737E-4 88 8.594782642244368E-5 9.263265736641153E-4 0.0 0.8312014293314529 1.7189565284488737E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 26760 0.0 55.536922 1 GTATCAA 50580 0.0 38.457016 1 GTGGTAT 9420 0.0 34.647797 1 TGGTATC 9510 0.0 33.62918 2 TATCAAC 65310 0.0 29.651423 2 ATCAACG 65955 0.0 29.21206 3 TCAACGC 66530 0.0 28.966036 4 CAACGCA 67875 0.0 28.374582 5 AACGCAG 69740 0.0 27.651104 6 ACGCAGA 79205 0.0 24.316162 7 CGCAGAG 80130 0.0 24.036264 8 GTACATG 69100 0.0 22.095686 1 TACATGG 69255 0.0 21.809113 2 GCAGAGT 88015 0.0 21.78507 9 ACATGGG 70875 0.0 20.876183 3 GAGTACT 49670 0.0 20.743275 12-13 CAGAGTA 87395 0.0 19.409657 10-11 GTACTTT 54295 0.0 19.02919 14-15 CATGGGG 43010 0.0 18.871252 4 CTTATAC 16380 0.0 18.597277 1 >>END_MODULE