##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139271_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9535367 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.916327184889685 33.0 31.0 34.0 30.0 34.0 2 31.91106351753425 33.0 31.0 34.0 30.0 34.0 3 32.03801615606405 34.0 31.0 34.0 30.0 34.0 4 35.52462826024421 37.0 35.0 37.0 33.0 37.0 5 35.54384513988816 37.0 35.0 37.0 33.0 37.0 6 35.595905747518685 37.0 35.0 37.0 33.0 37.0 7 35.50036144387521 37.0 35.0 37.0 33.0 37.0 8 35.48345333745413 37.0 35.0 37.0 33.0 37.0 9 37.09400414268271 39.0 37.0 39.0 33.0 39.0 10-11 37.07859215067443 39.0 37.0 39.0 33.0 39.0 12-13 37.04407696106505 39.0 37.0 39.0 33.0 39.0 14-15 38.412312971278396 40.0 38.0 41.0 33.0 41.0 16-17 38.425568675017956 40.0 38.0 41.0 33.0 41.0 18-19 38.437442313442155 40.0 38.0 41.0 33.0 41.0 20-21 38.49396128389972 40.0 38.0 41.0 33.0 41.0 22-23 38.4794623741692 40.0 38.0 41.0 33.0 41.0 24-25 38.486211377660084 40.0 38.0 41.0 33.0 41.0 26-27 38.462991089555004 40.0 38.0 41.0 33.0 41.0 28-29 38.435356238769 40.0 38.0 41.0 33.0 41.0 30-31 38.38873049086498 40.0 38.0 41.0 33.0 41.0 32-33 38.346181970481126 40.0 38.0 41.0 33.0 41.0 34-35 38.28957036035388 40.0 38.0 41.0 33.0 41.0 36-37 38.23635999016667 40.0 38.0 41.0 33.0 41.0 38-39 38.15774184358153 40.0 38.0 41.0 33.0 41.0 40-41 38.090979976660634 40.0 38.0 41.0 33.0 41.0 42-43 38.005112108495524 40.0 37.5 41.0 32.5 41.0 44-45 37.886790843893145 40.0 37.0 41.0 32.0 41.0 46-47 37.78604184404497 40.0 37.0 41.0 32.0 41.0 48-49 37.68545213379221 40.0 37.0 41.0 32.0 41.0 50-51 37.550766524730946 40.0 36.5 41.0 31.0 41.0 52-53 37.42688794506483 40.0 36.0 41.0 31.0 41.0 54-55 37.28623417181231 39.0 36.0 41.0 31.0 41.0 56-57 37.108621400676796 39.0 35.5 41.0 31.0 41.0 58-59 37.259712349028405 39.0 35.5 41.0 31.0 41.0 60-61 37.32509556898124 39.0 35.5 41.0 31.0 41.0 62-63 37.17015180469708 39.0 35.0 41.0 31.0 41.0 64-65 36.96859660419285 39.0 35.0 41.0 31.0 41.0 66-67 36.707135093618 38.0 35.0 40.0 31.0 41.0 68-69 36.44047681607681 37.5 35.0 40.0 31.0 41.0 70-71 36.20406563837955 37.0 35.0 40.0 31.0 41.0 72-73 35.97045512124936 36.5 35.0 39.0 31.0 41.0 74-75 35.681162242290156 36.0 34.0 39.0 31.0 41.0 76-77 35.41194610341806 36.0 34.0 39.0 30.5 40.5 78-79 35.084070703755756 35.0 34.0 37.5 30.0 39.5 80-81 34.77509383889758 35.0 34.0 37.0 30.0 39.0 82-83 34.485405550922664 35.0 34.0 36.5 30.0 39.0 84-85 34.24132548879922 35.0 34.0 36.0 30.0 37.0 86-87 34.04943778685394 35.0 34.0 36.0 30.0 37.0 88-89 33.929958056561134 35.0 34.0 35.5 30.0 37.0 90-91 33.81702675849732 35.0 34.0 35.0 30.0 36.0 92-93 33.718795050200704 35.0 34.0 35.0 30.0 36.0 94-95 33.674631418501065 35.0 34.0 35.0 30.0 36.0 96-97 33.66737920694851 35.0 34.0 35.0 30.0 36.0 98-99 33.694971520542275 35.0 34.0 35.0 30.0 36.0 100 33.34004656811932 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 55.0 17 359.0 18 1275.0 19 3810.0 20 9610.0 21 19487.0 22 31804.0 23 45470.0 24 60621.0 25 75749.0 26 89190.0 27 97717.0 28 112137.0 29 138534.0 30 166083.0 31 193309.0 32 243420.0 33 316095.0 34 428695.0 35 599861.0 36 924953.0 37 1698560.0 38 2601382.0 39 1588991.0 40 88198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.09942490939258 20.6515386350625 14.262156873458567 23.986879582086353 2 13.996241570985154 21.228674260780945 42.18854921892362 22.586534949310288 3 17.766636564696462 26.610753419349248 30.477872534953292 25.144737481000995 4 12.21345754180201 18.23841704257424 39.741794940876424 29.806330474747327 5 13.187264140653971 38.351935703630616 35.606832852595566 12.853967303119845 6 29.2762617317194 38.16182429055955 19.623104176273447 12.9388098014476 7 26.190580813512476 32.881807276007315 23.652807490262305 17.274804420217908 8 24.02405696602973 36.99640506757632 21.733175031438222 17.246362934955727 9 25.352637187430748 17.579375812173772 21.646623564672446 35.42136343572303 10-11 23.671211135011028 27.199796379069056 29.41196643170102 19.7170260542189 12-13 24.391752279999842 24.851037388457964 29.256507028442808 21.50070330309938 14-15 21.81427654765829 26.352634306466804 26.566627152362432 25.26646199351247 16-17 21.64528205641275 29.384301298681688 27.2147979279654 21.755618716940166 18-19 21.724038644512923 29.033362283735226 28.281595698329998 20.961003373421853 20-21 22.7259511864899 28.160750217765695 27.862593257332 21.2507053384124 22-23 22.450532756464835 28.06432342711121 27.683152423257134 21.801991393166816 24-25 22.087862595283514 28.221138749141545 27.759188961951942 21.931809693623 26-27 22.0362501202572 28.346322863377832 27.65619636068854 21.961230655676427 28-29 21.979626867297693 28.398772062657056 27.745404050605888 21.87619701943936 30-31 22.238824360524912 28.192327137250118 27.677853584640964 21.890994917584003 32-33 22.04687613230389 28.338150137014225 27.646966074398115 21.968007656283774 34-35 22.18897422198619 28.285480956787367 27.704843088644783 21.82070173258166 36-37 22.104797521236947 28.15255682739371 27.743857814338014 21.998787837031326 38-39 21.98115870690951 28.205497054344207 27.876647654494498 21.936696584251784 40-41 22.177808911647418 28.054101649593278 27.833126147467112 21.93496329129219 42-43 22.026732450274046 28.10686475468151 27.7683686332095 22.09803416183494 44-45 22.094753893237826 28.127641613396715 27.754384078958033 22.02322041440743 46-47 22.039586186248293 28.077966417201704 27.714684479356457 22.167762917193542 48-49 21.935327749405722 28.06553115156233 27.852673326492415 22.14646777253953 50-51 21.811208539500253 28.05350772823214 27.933796824969086 22.201486907298516 52-53 21.982498417091566 27.836332853582867 27.90381591523386 22.277352814091707 54-55 22.00292282747503 27.630957311312006 28.020911928214115 22.345207932998854 56-57 21.80875575520428 27.513557873899448 28.144332970086612 22.53335340080966 58-59 21.686587077063432 27.453300498090233 28.3503994324152 22.509712992431137 60-61 21.624212412868427 27.315008826214882 28.689383398261647 22.37139536265504 62-63 21.492757459279886 27.526466774709057 28.698629657861257 22.2821461081498 64-65 21.310597453131233 27.849879876229387 28.35850205558404 22.481020615055343 66-67 21.164885191421245 28.074885854517774 28.080142317882956 22.68008663617803 68-69 21.283342946154026 28.27253195187685 28.086180390450227 22.3579447115189 70-71 21.35829688875374 28.317463312737235 27.735899059936347 22.588340738572676 72-73 21.683501331627657 28.17839559115219 27.286651587633166 22.85145148958699 74-75 21.931072462484575 27.975332114195716 27.346028373300925 22.747567050018784 76-77 22.141761415317585 27.507471887801245 27.45794945715494 22.892817239726234 78-79 22.499520019026207 27.314240000058902 27.255384423189273 22.930855557725618 80-81 22.863758061925974 27.314995651164658 26.97083964006572 22.850406646843645 82-83 22.55315674538786 27.633355338786238 26.81756335587368 22.995924559952226 84-85 22.97673719818876 27.621454858700023 26.765181940821247 22.636626002289965 86-87 22.825448953279395 27.924808985916492 26.822727392138145 22.427014668665965 88-89 22.713045499651113 28.14249033928315 26.698897537503726 22.445566623562012 90-91 22.88277054870757 28.22618779457357 27.10962392595102 21.781417730767842 92-93 23.083031170456778 27.95685768506043 27.37953055550429 21.580580588978506 94-95 22.728767950536525 28.001698206640874 27.85045934907625 21.419074493746354 96-97 23.013499223357268 27.688217500934876 28.088916796420666 21.20936647928719 98-99 23.67833898834641 29.776121612846595 28.575130089473998 17.970409309332993 100 22.87414980823446 30.96784693272685 22.47183793063574 23.686165328402954 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3090.0 1 2309.5 2 1674.5 3 1815.0 4 1787.5 5 1867.5 6 2144.5 7 2487.5 8 2789.0 9 3110.5 10 3474.5 11 3846.0 12 4299.0 13 4964.5 14 5868.5 15 6908.0 16 8127.5 17 9662.0 18 11671.0 19 14400.5 20 18293.0 21 23515.0 22 30257.0 23 39078.5 24 51170.5 25 66238.5 26 84864.0 27 106342.5 28 129040.0 29 152943.5 30 174942.0 31 195444.5 32 217226.5 33 238060.5 34 256825.5 35 274695.0 36 294567.0 37 315013.5 38 332097.5 39 345130.5 40 358027.5 41 369456.0 42 377703.5 43 386748.0 44 394597.5 45 401013.0 46 403500.0 47 402786.5 48 400377.5 49 392532.5 50 382494.0 51 371019.5 52 355248.5 53 336065.0 54 314989.5 55 290958.5 56 265989.5 57 239865.5 58 212366.5 59 184601.0 60 154260.5 61 125116.5 62 99556.5 63 77922.0 64 59827.0 65 45188.0 66 34443.5 67 26891.5 68 21164.5 69 16166.5 70 12358.5 71 9587.0 72 7314.5 73 5561.5 74 4214.5 75 3160.5 76 2380.5 77 1805.0 78 1391.5 79 1050.0 80 788.0 81 600.0 82 469.5 83 332.0 84 233.0 85 181.0 86 153.0 87 123.0 88 80.5 89 54.5 90 43.0 91 37.5 92 31.5 93 18.5 94 9.5 95 7.0 96 6.0 97 5.0 98 4.5 99 6.0 100 20.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.4120728651555833E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.573090999014511E-5 12-13 4.7192729970435326E-5 14-15 1.573090999014511E-5 16-17 5.243636663381703E-5 18-19 9.805600560523786E-4 20-21 4.511627355528512E-4 22-23 0.0 24-25 8.929907631661901E-5 26-27 1.1565706460687743E-4 28-29 0.0 30-31 0.0 32-33 3.171440962701476E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 3.8973814996979254E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 2.1600974203936596E-4 76-77 1.819785214390716E-5 78-79 4.6019057043750504E-4 80-81 1.8629878039503413E-5 82-83 4.399831549306398E-5 84-85 4.452446692604925E-4 86-87 1.4165387596554825E-4 88-89 4.5657082049363784E-5 90-91 1.984049695418611E-5 92-93 7.047154862234834E-4 94-95 4.773285313173886E-4 96-97 4.1108628645412156E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2994.0 20-21 5774.0 22-23 6398.0 24-25 7183.0 26-27 9680.0 28-29 14185.0 30-31 23455.0 32-33 27477.0 34-35 35836.0 36-37 51444.0 38-39 59023.0 40-41 54629.0 42-43 57819.0 44-45 66653.0 46-47 71683.0 48-49 43122.0 50-51 42511.0 52-53 14362.0 54-55 14330.0 56-57 14013.0 58-59 14174.0 60-61 15604.0 62-63 80610.0 64-65 85940.0 66-67 90478.0 68-69 92053.0 70-71 91551.0 72-73 87581.0 74-75 89257.0 76-77 92442.0 78-79 96957.0 80-81 97540.0 82-83 94421.0 84-85 94865.0 86-87 97984.0 88-89 104174.0 90-91 109510.0 92-93 114082.0 94-95 134661.0 96-97 325490.0 98-99 599109.0 100-101 6304313.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.92242132397064 #Duplication Level Percentage of deduplicated Percentage of total 1 87.78394281398663 72.79257091500743 2 8.394459301841035 13.921777820283737 3 2.148269513162889 5.344191290638032 4 0.7995373314102302 2.65198285837769 5 0.36448757239323215 1.5112096022671424 6 0.1904860814172608 0.9477340259780564 7 0.10810440250855322 0.6274995168253252 8 0.06073994253599274 0.40293624849306847 9 0.03863025523120985 0.2882982870121414 >10 0.10930610673763357 1.3746882646288268 >50 0.0016361197646669599 0.0908740828030085 >100 4.005590107060971E-4 0.046237087685458846 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.0487273326763407E-5 0.0 0.0 0.0 5 0.0 2.0974546653526813E-5 0.0 1.0487273326763407E-5 0.0 6 0.0 2.0974546653526813E-5 0.0 1.0487273326763407E-5 0.0 7 0.0 2.0974546653526813E-5 0.0 1.0487273326763407E-5 0.0 8 0.0 4.1949093307053626E-5 0.0 1.0487273326763407E-5 0.0 9 0.0 1.0487273326763407E-4 0.0 2.0974546653526813E-5 0.0 10-11 5.243636663381703E-6 1.0487273326763407E-4 0.0 4.7192729970435326E-5 0.0 12-13 1.0487273326763407E-5 1.0487273326763407E-4 0.0 6.816727662396214E-5 0.0 14-15 1.0487273326763407E-5 1.2584727992116088E-4 0.0 7.865454995072555E-5 0.0 16-17 1.0487273326763407E-5 1.2584727992116088E-4 0.0 8.389818661410725E-5 0.0 18-19 1.0487273326763407E-5 1.3109091658454258E-4 0.0 1.1011636993101577E-4 0.0 20-21 1.0487273326763407E-5 1.3633455324792428E-4 0.0 1.4157818991130598E-4 0.0 22-23 1.0487273326763407E-5 1.3633455324792428E-4 0.0 2.5693819650570343E-4 0.0 24-25 1.0487273326763407E-5 1.5206546323806938E-4 0.0 4.1424729640715454E-4 0.0 26-27 1.0487273326763407E-5 1.573090999014511E-4 0.0 9.123927794284163E-4 0.0 28-29 1.0487273326763407E-5 1.573090999014511E-4 0.0 0.004215883877358889 0.0 30-31 2.0974546653526813E-5 1.782836465549779E-4 0.0 0.015222277233797083 0.0 32-33 2.0974546653526813E-5 1.782836465549779E-4 0.0 0.04750210453357485 0.0 34-35 2.0974546653526813E-5 1.782836465549779E-4 0.0 0.09036883425672027 0.0 36-37 2.0974546653526813E-5 1.9401455654512303E-4 0.0 0.1489612303333474 0.0 38-39 2.0974546653526813E-5 2.3072001318879496E-4 0.0 0.21526177230514568 0.0 40-41 2.0974546653526813E-5 2.7266910649584856E-4 0.0 0.277414597676209 0.0 42-43 2.0974546653526813E-5 2.9364365314937536E-4 0.0 0.3894658695360126 0.0 44-45 2.0974546653526813E-5 3.093745631395205E-4 0.0 0.49223066086496725 0.0 46-47 2.0974546653526813E-5 3.198618364662839E-4 0.0 0.6025043398958845 0.0 48-49 2.0974546653526813E-5 3.3034910979304734E-4 0.0 0.6738125548812122 0.0 50-51 2.0974546653526813E-5 3.460800197831924E-4 0.0 1.0447264379021806 0.0 52-53 2.0974546653526813E-5 3.460800197831924E-4 0.0 1.543076422753314 0.0 54-55 2.0974546653526813E-5 3.460800197831924E-4 0.0 2.206968017067408 0.0 56-57 2.0974546653526813E-5 3.460800197831924E-4 0.0 2.9292212874449404 0.0 58-59 2.0974546653526813E-5 3.5132365644657414E-4 0.0 3.673707577275211 0.0 60-61 2.0974546653526813E-5 3.7229820310010094E-4 0.0 4.413867866858192 0.0 62-63 2.0974546653526813E-5 3.775418397634826E-4 0.0 4.953464297703486 0.0 64-65 2.0974546653526813E-5 3.775418397634826E-4 0.0 4.961481818161797 0.0 66-67 2.0974546653526813E-5 3.88029113090246E-4 0.0 4.965110414732857 0.0 68-69 2.0974546653526813E-5 3.88029113090246E-4 0.0 4.968775716760561 0.0 70-71 2.0974546653526813E-5 3.9327274975362774E-4 0.0 4.972435775151601 0.0 72-73 2.0974546653526813E-5 3.985163864170094E-4 0.0 4.975723535339542 0.0 74-75 2.0974546653526813E-5 3.985163864170094E-4 0.0 4.978612779141065 0.0 76-77 2.0974546653526813E-5 4.0900365974377286E-4 0.0 4.981108750192835 0.0 78-79 2.0974546653526813E-5 4.1949093307053626E-4 0.0 4.983090844851594 0.0 80-81 2.0974546653526813E-5 4.24734569733918E-4 0.0 4.983788248527823 0.0 82-83 2.0974546653526813E-5 4.3522184306068134E-4 0.0 4.98428115037418 0.0 84-85 2.0974546653526813E-5 4.4046547972406306E-4 0.0 4.984422728564092 0.0 86-87 2.0974546653526813E-5 4.5095275305082646E-4 0.0 4.984464677657399 0.0 88 2.0974546653526813E-5 4.6144002637758986E-4 0.0 4.984464677657399 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7830 0.0 37.420994 1 GTATCAA 13195 0.0 33.423256 1 TCAACGC 14135 0.0 29.826756 4 ATCAACG 14175 0.0 29.6817 3 CAACGCA 14545 0.0 28.985989 5 AACGCAG 15435 0.0 27.370539 6 TATCAAC 16020 0.0 27.098343 2 TGTAGAT 13865 0.0 23.694056 94 ACGCAGA 18425 0.0 22.882137 7 CGCAGAG 18705 0.0 22.44733 8 GGTGTAG 15635 0.0 20.719881 94 GTACATG 32070 0.0 19.995262 1 GTGTAGA 14560 0.0 19.60837 94 TACATGG 32025 0.0 19.268776 2 AGGTGTA 19105 0.0 18.969526 94 ACATGGG 32510 0.0 18.543285 3 GCAGAGT 24280 0.0 17.079859 9 TAGGTGT 21860 0.0 16.698084 94 CATGGGG 22665 0.0 16.697487 4 AGAGTAC 20385 0.0 16.310658 10-11 >>END_MODULE