##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139270_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 27170867 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.70361685550925 33.0 31.0 34.0 30.0 34.0 2 31.71299097669574 33.0 31.0 34.0 28.0 34.0 3 31.852831637650723 34.0 31.0 34.0 30.0 34.0 4 35.34927968989727 37.0 35.0 37.0 33.0 37.0 5 35.36634116239279 37.0 35.0 37.0 33.0 37.0 6 35.42337905522117 37.0 35.0 37.0 33.0 37.0 7 35.311864063815115 37.0 35.0 37.0 32.0 37.0 8 35.30264934129632 37.0 35.0 37.0 32.0 37.0 9 36.86916836330619 39.0 37.0 39.0 33.0 39.0 10-11 36.875910768692066 39.0 37.0 39.0 33.0 39.0 12-13 36.846550387957805 39.0 37.0 39.0 33.0 39.0 14-15 38.180833353606275 40.0 38.0 41.0 33.0 41.0 16-17 38.18815166994855 40.0 38.0 41.0 33.0 41.0 18-19 38.188745099668694 40.0 38.0 41.0 33.0 41.0 20-21 38.25890124267292 40.0 38.0 41.0 33.0 41.0 22-23 38.23928559748781 40.0 38.0 41.0 33.0 41.0 24-25 38.2488236980178 40.0 38.0 41.0 33.0 41.0 26-27 38.23163971762625 40.0 38.0 41.0 33.0 41.0 28-29 38.20653323593152 40.0 38.0 41.0 33.0 41.0 30-31 38.15538503053546 40.0 38.0 41.0 33.0 41.0 32-33 38.116407285799724 40.0 38.0 41.0 32.0 41.0 34-35 38.05615522424434 40.0 38.0 41.0 32.0 41.0 36-37 37.993265776271016 40.0 37.5 41.0 32.0 41.0 38-39 37.9062534534087 40.0 37.0 41.0 32.0 41.0 40-41 37.835389843239454 40.0 37.0 41.0 32.0 41.0 42-43 37.733195426365235 40.0 37.0 41.0 31.5 41.0 44-45 37.58700588763879 40.0 37.0 41.0 31.0 41.0 46-47 37.46952858279708 40.0 36.0 41.0 31.0 41.0 48-49 37.3525421119157 40.0 36.0 41.0 31.0 41.0 50-51 37.206192740068204 39.0 36.0 41.0 31.0 41.0 52-53 37.07580186376377 39.0 35.5 41.0 30.0 41.0 54-55 36.92735465603536 39.0 35.0 40.0 30.0 41.0 56-57 36.74158250347631 39.0 35.0 40.0 30.0 41.0 58-59 36.90608994571811 39.0 35.0 40.0 30.5 41.0 60-61 36.98472075323605 39.0 35.0 41.0 31.0 41.0 62-63 36.827364221594024 38.5 35.0 40.0 31.0 41.0 64-65 36.61959734701587 38.0 35.0 40.0 31.0 41.0 66-67 36.35153942401101 37.5 35.0 40.0 30.0 41.0 68-69 36.07510702318682 37.0 34.0 40.0 30.0 41.0 70-71 35.84277847157095 37.0 34.0 39.5 30.0 41.0 72-73 35.611551003919914 36.0 34.0 39.0 30.0 41.0 74-75 35.34743847764305 36.0 34.0 39.0 30.0 40.5 76-77 35.109775319290094 35.5 34.0 38.5 30.0 40.0 78-79 34.795754614691354 35.0 34.0 37.0 30.0 39.0 80-81 34.509957110196275 35.0 34.0 37.0 30.0 39.0 82-83 34.24012090811681 35.0 34.0 36.0 30.0 39.0 84-85 34.0232641737064 35.0 34.0 36.0 29.5 37.0 86-87 33.80601423325381 35.0 33.0 36.0 29.0 37.0 88-89 33.65471632190432 35.0 33.0 35.0 29.0 36.5 90-91 33.53559797556433 35.0 33.0 35.0 29.0 36.0 92-93 33.44486746060021 35.0 33.0 35.0 29.0 36.0 94-95 33.41540534631852 35.0 33.0 35.0 29.0 36.0 96-97 33.42747301545624 35.0 33.0 35.0 29.0 36.0 98-99 33.484452659171886 35.0 33.0 35.0 29.5 35.0 100 33.11038569128226 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 6.0 16 261.0 17 1317.0 18 4335.0 19 13943.0 20 34767.0 21 68923.0 22 111657.0 23 156994.0 24 208804.0 25 257111.0 26 293998.0 27 313149.0 28 358576.0 29 433693.0 30 514072.0 31 607838.0 32 766599.0 33 994751.0 34 1343853.0 35 1877050.0 36 2894557.0 37 5087052.0 38 6952176.0 39 3694300.0 40 181084.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.08685600647193 20.487943943783613 14.403684652388899 24.021515397355557 2 14.121319720861319 20.939670419791902 41.97603999901807 22.962969860328712 3 17.834186152396242 26.146258049108262 30.460930819763682 25.558624978731814 4 12.415054698107351 18.051727977616615 39.26940572047259 30.263811603803443 5 13.345496135523613 38.15814258398218 35.50475580017417 12.991605480320029 6 29.817484293011336 37.83186602032243 19.235893355924198 13.114756330742042 7 26.478402509452682 32.7673152842208 23.296505282404517 17.457776923922 8 24.242639156219752 36.91177896206915 21.3939555699108 17.451626311800293 9 25.267784057093213 17.683631516064615 21.445532084051642 35.603052342790534 10-11 23.813462202776225 27.111168149345893 29.170251082980155 19.90511856489773 12-13 24.505355705260175 24.721206611294065 28.98661977227202 21.786817911173735 14-15 21.886010302434677 26.233327772228325 26.334914549444317 25.54574737589268 16-17 21.806437076448564 29.265138028101006 27.01127723525997 21.917147660190462 18-19 21.89601304644502 28.908561895164702 28.040883866470473 21.1545411919198 20-21 22.810201180549157 28.004407565184803 27.72484994567876 21.460541308587285 22-23 22.574752560517453 27.8500250923819 27.541929410696437 22.03329293640421 24-25 22.300192031569495 28.019239743523688 27.587320848877862 22.093247376028955 26-27 22.20233050737957 28.1646303762637 27.508694787985537 22.12434432837119 28-29 22.121928265397468 28.19140833769591 27.571959578728052 22.114703818178572 30-31 22.441447790672857 27.967328686366383 27.49474573582191 22.09647778713885 32-33 22.22187538399119 28.097891844896537 27.457875152147455 22.222357618964818 34-35 22.354157926497088 28.01714092827418 27.57018331775508 22.058517827473647 36-37 22.283594032159975 27.828909492109133 27.661284301915106 22.22621217381579 38-39 22.11519029560339 27.8720041441986 27.821959232554345 22.190846327643666 40-41 22.306664198587722 27.651938446311714 27.842923759769178 22.198473595331382 42-43 22.071851611498822 27.742021997652376 27.769499770383334 22.416626620465465 44-45 22.15907374088889 27.751686591241832 27.790315347361382 22.298924320507897 46-47 22.02422700726506 27.70885835630215 27.77832658679434 22.48858804963845 48-49 21.886221882958136 27.763678585279 27.892491958062273 22.45760757370059 50-51 21.75706920921264 27.805774620508792 27.965388996308178 22.47176717397038 52-53 21.919756254808668 27.644461075891165 27.901222350125863 22.5345603191743 54-55 21.925242091552033 27.482652584137927 27.903231853280776 22.68887347102926 56-57 21.847969240190398 27.33184348129067 27.993737941582385 22.826449336936548 58-59 21.755992604891652 27.289245224400748 28.0972614671086 22.857500703599 60-61 21.739723320258186 27.074627676178203 28.4304244795616 22.75522452400201 62-63 21.68717573137861 27.238819357833282 28.347497844962984 22.72650706582513 64-65 21.60747473658695 27.525107412760764 27.998584571190534 22.868833279461757 66-67 21.4344504679604 27.75743045034604 27.756308097342338 23.051810984351228 68-69 21.502504440704193 27.91796648530156 27.740439061819917 22.839090012174335 70-71 21.543985205795313 27.961156045965158 27.44167953709403 23.053179211145505 72-73 21.767530420697145 27.818877849180897 27.11557367722164 23.29801805290032 74-75 21.993780437545286 27.685164708068115 27.21154061824628 23.10951423614032 76-77 22.165735645476122 27.267400209157078 27.3674352442844 23.1994289010824 78-79 22.444545133055847 27.038760294155406 27.330853075307726 23.18584149748102 80-81 22.77284759117026 27.04543668543218 26.95363626879586 23.228079454601698 82-83 22.5267504701322 27.079634490374062 27.131930975569134 23.261684063924605 84-85 22.637652659502077 27.271776674934767 27.064592845109743 23.025977820453413 86-87 22.401533541379166 27.55459511343277 27.197987327319034 22.845884017869032 88-89 22.14486163926223 27.678947597817512 27.230442447408393 22.945748315511867 90-91 21.99073955004878 27.813904686515716 27.527656304569113 22.667699458866387 92-93 21.933951499562234 27.4553377393191 27.997893467362566 22.6128172937561 94-95 21.58590852538007 27.449951953885382 28.368872950265462 22.595266570469086 96-97 22.021218084415423 27.312937121020152 28.27874733887077 22.387097455693652 98-99 23.344807463711188 29.305866565840784 28.58956903431613 18.7597569361319 100 22.540501702539753 30.49651682234232 22.31380122173912 24.64918025337881 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 12468.0 1 8988.5 2 6103.5 3 6647.5 4 6399.0 5 6422.5 6 7200.5 7 8289.0 8 9174.5 9 10238.5 10 11688.0 11 12926.5 12 14266.5 13 16089.0 14 18145.5 15 20709.0 16 23931.0 17 28032.0 18 33222.5 19 40119.5 20 49957.5 21 63366.5 22 81893.0 23 105020.0 24 134764.0 25 174654.0 26 223672.0 27 279120.5 28 337078.0 29 401297.5 30 462134.0 31 518759.0 32 579321.0 33 633044.0 34 686298.0 35 741506.0 36 802250.5 37 863251.0 38 907176.5 39 942212.0 40 984424.5 41 1023954.0 42 1050268.0 43 1077261.0 44 1104809.0 45 1128074.5 46 1140510.5 47 1145778.5 48 1144915.0 49 1126724.5 50 1103177.0 51 1072263.0 52 1023034.5 53 967487.5 54 911755.5 55 845940.5 56 771887.0 57 693785.5 58 618165.5 59 544640.5 60 461417.5 61 378208.0 62 304019.5 63 238977.0 64 182170.0 65 137056.5 66 105560.0 67 84032.0 68 67445.0 69 52394.0 70 40500.0 71 31551.0 72 24406.0 73 18543.5 74 14108.0 75 10908.5 76 8326.5 77 6297.5 78 4887.0 79 3834.0 80 2935.5 81 2232.5 82 1772.5 83 1282.5 84 911.0 85 703.0 86 567.0 87 446.0 88 284.0 89 160.5 90 112.0 91 94.5 92 78.0 93 42.5 94 19.0 95 18.0 96 15.5 97 11.5 98 10.0 99 17.5 100 68.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.6561856491366286E-4 6 0.0 7 7.360825107273905E-6 8 3.6804125536369523E-6 9 0.0 10-11 3.3123712982732574E-5 12-13 1.0673196405547162E-4 14-15 2.944330042909562E-5 16-17 8.46494887336499E-5 18-19 9.090619007483272E-4 20-21 4.5478471449057517E-4 22-23 0.0 24-25 9.22039835366468E-5 26-27 1.3844008919307316E-4 28-29 0.0 30-31 0.0 32-33 6.12067091901206E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 4.2392191358351795E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.5619586511641506E-4 76-77 1.2644254879433764E-5 78-79 4.1832862475297E-4 80-81 4.5424313705674845E-5 82-83 3.7279432945615536E-5 84-85 3.7352714411751113E-4 86-87 8.120557068410324E-5 88-89 1.6032434990193874E-5 90-91 2.560256450182088E-5 92-93 5.184395575348004E-4 94-95 3.3052780368520644E-4 96-97 3.166491631420275E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 10399.0 20-21 19430.0 22-23 21467.0 24-25 24706.0 26-27 31529.0 28-29 40828.0 30-31 51813.0 32-33 56246.0 34-35 69063.0 36-37 101837.0 38-39 119024.0 40-41 103215.0 42-43 110947.0 44-45 134517.0 46-47 174260.0 48-49 109266.0 50-51 112374.0 52-53 47657.0 54-55 49529.0 56-57 49422.0 58-59 49572.0 60-61 54394.0 62-63 232016.0 64-65 250236.0 66-67 264476.0 68-69 270091.0 70-71 268927.0 72-73 268102.0 74-75 276704.0 76-77 295072.0 78-79 309139.0 80-81 315276.0 82-83 312487.0 84-85 318906.0 86-87 331347.0 88-89 345158.0 90-91 356950.0 92-93 386957.0 94-95 448209.0 96-97 991038.0 98-99 1782231.0 100-101 1.760605E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.41623737589461 #Duplication Level Percentage of deduplicated Percentage of total 1 85.64001805928086 66.29927966953188 2 8.906233331265486 13.789741473967071 3 2.7285435218589043 6.337007189360653 4 1.1027316567020453 3.4147734278863626 5 0.5899480041697782 2.2835777365121412 6 0.331356840162673 1.5391439876495918 7 0.1941331261046504 1.0520339321129466 8 0.12008915166602525 0.7437480217317456 9 0.0864252639380081 0.6021646873469263 >10 0.2938381999993237 3.3960718320728605 >50 0.0050854468563860935 0.26025392704108186 >100 0.001512331779676685 0.18611790442885748 >500 5.324539909059301E-5 0.031954695096267 >1k 3.182081698162018E-5 0.0641315152616476 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.360825107273905E-6 0.0 2 0.0 3.3123712982732574E-5 0.0 1.472165021454781E-5 7.360825107273905E-6 3 0.0 3.3123712982732574E-5 0.0 1.472165021454781E-5 7.360825107273905E-6 4 0.0 1.2145361427001943E-4 0.0 4.048453809000648E-5 1.1041237660910857E-5 5 0.0 1.3617526448456724E-4 0.0 7.360825107273905E-5 1.1041237660910857E-5 6 0.0 1.3617526448456724E-4 0.0 8.096907618001296E-5 1.472165021454781E-5 7 0.0 1.3985567703820418E-4 0.0 8.46494887336499E-5 1.472165021454781E-5 8 0.0 1.7297939002093677E-4 0.0 8.46494887336499E-5 1.472165021454781E-5 9 0.0 3.385979549345996E-4 0.0 9.569072639456077E-5 1.840206276818476E-5 10-11 0.0 3.385979549345996E-4 0.0 1.2145361427001943E-4 1.840206276818476E-5 12-13 0.0 3.385979549345996E-4 0.0 1.3801547076138572E-4 1.840206276818476E-5 14-15 0.0 4.858144570800778E-4 0.0 1.6745877119048134E-4 4.232474436682496E-5 16-17 0.0 5.005361072946255E-4 0.0 1.9322165906594E-4 5.520618830455429E-5 18-19 0.0 5.465412642150874E-4 0.0 2.465876410936758E-4 6.0726807135009715E-5 20-21 0.0 6.091082776269156E-4 0.0 3.44118573765055E-4 6.992783851910209E-5 22-23 0.0 6.753557035923807E-4 0.0 6.679948784851068E-4 8.832990128728686E-5 24-25 0.0 7.397629232810274E-4 0.0 0.0013470309946311246 9.937113894819771E-5 26-27 0.0 7.618453986028491E-4 0.0 0.0033454950112559896 1.0305155150183466E-4 28-29 0.0 7.69206223710123E-4 0.0 0.015417248187185192 1.0305155150183466E-4 30-31 0.0 8.869794254265055E-4 0.0 0.053855476897369525 1.0489175777865314E-4 32-33 0.0 8.998608693642348E-4 0.0 0.154415389100392 1.1777320171638247E-4 34-35 0.0 0.0010378763401256205 0.0 0.2940355197351634 1.324948519309303E-4 36-37 0.0 0.0011758918108870063 0.0 0.49439901936143593 1.3617526448456724E-4 38-39 1.8402062768184762E-6 0.0012310979991915607 0.0 0.7250523143041405 1.4169588331502267E-4 40-41 3.6804125536369523E-6 0.0013801547076138572 0.0 0.9474835676020202 1.4353608959184115E-4 42-43 3.6804125536369523E-6 0.0014114382143197712 0.0 1.2724952795948692 1.5273712097593355E-4 44-45 3.6804125536369523E-6 0.0015880980168943449 0.0 1.5655573302095953 1.6745877119048134E-4 46-47 3.6804125536369523E-6 0.0017334743127630046 0.0 1.8568822260990052 1.7297939002093677E-4 48-49 3.6804125536369523E-6 0.0017408351378702786 0.0 2.033389291552603 1.8402062768184762E-4 50-51 3.6804125536369523E-6 0.001985582572687136 0.0 2.4365637651533167 1.8770104023548456E-4 52-53 3.6804125536369523E-6 0.002002144429178502 0.0 2.9373298982325444 2.024226904500324E-4 54-55 3.6804125536369523E-6 0.002024226904500324 0.0 3.573680589581481 2.153041343877617E-4 56-57 3.6804125536369523E-6 0.002068391855143967 0.0 4.265535582651816 2.1714434066458018E-4 58-59 3.6804125536369523E-6 0.002075752680251241 0.0 4.973455576518777 2.2082475321821713E-4 60-61 3.6804125536369523E-6 0.0021272784560021586 0.0 5.670273605917691 2.3002578460230952E-4 62-63 3.6804125536369523E-6 0.002189845469413987 0.0 6.175544563962571 2.5026805364731277E-4 64-65 3.6804125536369523E-6 0.002460355792106303 0.0 6.185717224260824 2.5394846620094974E-4 66-67 3.6804125536369523E-6 0.0024916392988122166 0.0 6.189051678034419 2.594690850314051E-4 68-69 3.6804125536369523E-6 0.0025302836306254047 0.0 6.192203951386608 2.6682991013867905E-4 70-71 3.6804125536369523E-6 0.0025799692000995035 0.0 6.195061791734508 2.8339176663004533E-4 72-73 3.6804125536369523E-6 0.00259653105659087 0.0 6.1977208898045095 3.2387630472005183E-4 74-75 3.6804125536369523E-6 0.002635175388404058 0.0 6.2001702043589555 3.2387630472005183E-4 76-77 3.6804125536369523E-6 0.0027308661147986187 0.0 6.202385812716245 3.2387630472005183E-4 78-79 3.6804125536369523E-6 0.002775031065442262 0.0 6.203887421038129 3.2387630472005183E-4 80-81 3.6804125536369523E-6 0.0027805516842727175 0.0 6.204724714894081 3.330773361041442E-4 82-83 3.6804125536369523E-6 0.002786072303103173 0.0 6.205223410795099 3.533196051491474E-4 84-85 3.6804125536369523E-6 0.0028118351909786317 0.0 6.205403751010227 3.533196051491474E-4 86-87 3.6804125536369523E-6 0.0028725619981136413 0.0 6.205466318023639 3.533196051491474E-4 88 3.6804125536369523E-6 0.0030621032446259445 0.0 6.2054773592613 3.570000177027844E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21880 0.0 39.138977 1 GTATCAA 34990 0.0 32.112648 1 TCAACGC 38205 0.0 27.845707 4 ATCAACG 38260 0.0 27.817001 3 CAACGCA 39260 0.0 27.119501 5 AACGCAG 41115 0.0 26.085575 6 TATCAAC 42655 0.0 25.428135 2 ACGCAGA 49900 0.0 21.345585 7 CGCAGAG 50600 0.0 21.02461 8 GTACATG 84830 0.0 20.419827 1 TACATGG 83690 0.0 20.149345 2 ACATGGG 85655 0.0 19.09037 3 CATGGGG 64515 0.0 17.873 4 GCAGAGT 65715 0.0 16.070127 9 ACCGAAC 3355 0.0 16.009556 8 AGAGTAC 54825 0.0 15.687053 10-11 TATACCG 2625 0.0 15.016275 5 CAGAGTA 63475 0.0 14.740125 10-11 GTACTAG 6800 0.0 14.651059 1 GTGGTAT 13670 0.0 14.480975 1 >>END_MODULE