##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139269_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8754447 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.880156793455942 33.0 31.0 34.0 30.0 34.0 2 31.88163786930231 33.0 31.0 34.0 30.0 34.0 3 32.01077760822585 34.0 31.0 34.0 30.0 34.0 4 35.50304925028389 37.0 35.0 37.0 33.0 37.0 5 35.520346630689524 37.0 35.0 37.0 33.0 37.0 6 35.5734695749486 37.0 35.0 37.0 33.0 37.0 7 35.47490138440498 37.0 35.0 37.0 33.0 37.0 8 35.459837954356225 37.0 35.0 37.0 33.0 37.0 9 37.067660698614084 39.0 37.0 39.0 33.0 39.0 10-11 37.06109466423179 39.0 37.0 39.0 33.0 39.0 12-13 37.02826843317459 39.0 37.0 39.0 33.0 39.0 14-15 38.39600513887399 40.0 38.0 41.0 33.0 41.0 16-17 38.405902965658484 40.0 38.0 41.0 33.0 41.0 18-19 38.41372950227468 40.0 38.0 41.0 33.0 41.0 20-21 38.47269681267379 40.0 38.0 41.0 33.0 41.0 22-23 38.45488310750359 40.0 38.0 41.0 33.0 41.0 24-25 38.46355415219988 40.0 38.0 41.0 33.0 41.0 26-27 38.44472915773849 40.0 38.0 41.0 33.0 41.0 28-29 38.417439047291836 40.0 38.0 41.0 33.0 41.0 30-31 38.36878187842251 40.0 38.0 41.0 33.0 41.0 32-33 38.33012229379606 40.0 38.0 41.0 33.0 41.0 34-35 38.27386107505363 40.0 38.0 41.0 33.0 41.0 36-37 38.215689331599535 40.0 38.0 41.0 33.0 41.0 38-39 38.137270708651094 40.0 38.0 41.0 33.0 41.0 40-41 38.073107135108785 40.0 38.0 41.0 33.0 41.0 42-43 37.98811004966851 40.0 37.5 41.0 32.0 41.0 44-45 37.868204164898046 40.0 37.0 41.0 32.0 41.0 46-47 37.76757974910553 40.0 37.0 41.0 32.0 41.0 48-49 37.66847798771765 40.0 37.0 41.0 32.0 41.0 50-51 37.53522078353667 40.0 36.5 41.0 31.0 41.0 52-53 37.4110897767315 40.0 36.0 41.0 31.0 41.0 54-55 37.27225864343072 39.0 36.0 41.0 31.0 41.0 56-57 37.09563231206958 39.0 35.5 41.0 31.0 41.0 58-59 37.245341491887515 39.0 35.5 41.0 31.0 41.0 60-61 37.30926645351252 39.0 35.5 41.0 31.0 41.0 62-63 37.15384628651465 39.0 35.0 41.0 31.0 41.0 64-65 36.95212482300286 39.0 35.0 40.5 31.0 41.0 66-67 36.68522527900976 38.0 35.0 40.0 31.0 41.0 68-69 36.412301301961286 37.5 35.0 40.0 31.0 41.0 70-71 36.173918886752 37.0 35.0 40.0 31.0 41.0 72-73 35.94018395050031 36.5 34.5 39.0 31.0 41.0 74-75 35.671609829982884 36.0 34.0 39.0 30.5 41.0 76-77 35.42230269810808 36.0 34.0 39.0 30.5 40.5 78-79 35.11670369643237 35.0 34.0 37.5 30.0 39.5 80-81 34.82513292033246 35.0 34.0 37.0 30.0 39.0 82-83 34.55990058250164 35.0 34.0 37.0 30.0 39.0 84-85 34.332306653975024 35.0 34.0 36.0 30.0 37.5 86-87 34.13756989307271 35.0 34.0 36.0 30.0 37.0 88-89 33.99360869113988 35.0 34.0 36.0 30.0 37.0 90-91 33.879861715886804 35.0 34.0 35.0 30.0 36.5 92-93 33.791650054566524 35.0 34.0 35.0 30.0 36.0 94-95 33.76484565577286 35.0 34.0 35.0 30.0 36.0 96-97 33.76526225637353 35.0 34.0 35.0 30.0 36.0 98-99 33.793847673280176 35.0 34.0 35.0 30.0 36.0 100 33.46189643369604 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 35.0 17 286.0 18 1121.0 19 3786.0 20 9374.0 21 18604.0 22 30544.0 23 43147.0 24 56880.0 25 71222.0 26 83611.0 27 90972.0 28 104036.0 29 128072.0 30 151739.0 31 175103.0 32 219409.0 33 284818.0 34 384496.0 35 538183.0 36 824700.0 37 1507798.0 38 2343115.0 39 1592473.0 40 90923.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.924515277778255 20.667290578148453 14.488088168218964 23.920105975854327 2 13.890037828774334 21.0306830345766 42.482991786916976 22.596287349732087 3 17.724123522593718 26.35948335742966 30.53312219492562 25.383270925051004 4 12.140652630600195 18.295387475645235 39.871610394123124 29.692349499631444 5 13.206769557847704 38.17202427983008 35.804330768878415 12.816875393443796 6 29.31199423561534 38.2759070904193 19.570842110301196 12.841256563664158 7 26.245966906415326 32.7092428235893 23.730673534339008 17.314116735656373 8 23.85178913662841 37.23437211218163 21.73098103523627 17.182857715953702 9 25.09721059479828 17.79210040337214 21.774339372892427 35.33634962893716 10-11 23.542024853775704 27.27179891311208 29.573978109062203 19.612198124050018 12-13 24.26643786083837 24.82305833646222 29.34483294703407 21.565670855665335 14-15 21.615150931898025 26.5004520560698 26.675460294741697 25.208936717290477 16-17 21.518502524518844 29.524742329335606 27.35825322018009 21.598501925965458 18-19 21.559606854476563 29.154839473535866 28.414957267324827 20.87059640466275 20-21 22.483256394489615 28.298271860257184 28.08581219607957 21.13265954917363 22-23 22.220429345141163 28.18521513000201 27.894214407260353 21.700141117596473 24-25 21.909588120557718 28.334186675773054 27.984154151867642 21.772071051801586 26-27 21.890693794347218 28.46636892923217 27.851814445583813 21.791122830836795 28-29 21.79715246386117 28.52190688035131 27.925907877877563 21.755032777909953 30-31 22.06705124678495 28.369125259080008 27.840151043953416 21.723672450181624 32-33 21.911243465668015 28.409783697009583 27.853318975600576 21.82565386172183 34-35 22.012450094133733 28.394244526351102 27.884100795150466 21.70920458436469 36-37 21.94120214097337 28.191523339584556 27.999338901720133 21.867935617721944 38-39 21.76821759509091 28.27691858065552 28.15240439180302 21.802459432450544 40-41 21.96333927349929 28.091803300108186 28.15016279119009 21.794694635202433 42-43 21.77408189178552 28.141767949847257 28.117339336919244 21.966810821447982 44-45 21.8301822634819 28.204604530044964 28.078478111056498 21.886735095416636 46-47 21.713253671301896 28.175164640186097 28.008076603383703 22.103505085128305 48-49 21.644808098956737 28.18965813126482 28.16597847222326 21.999555297555183 50-51 21.550043605165605 28.312014083930677 28.133381029706854 22.004561281196864 52-53 21.695156042926616 28.22911469434392 28.062486727494836 22.013242535234625 54-55 21.760154927359224 28.10266726903744 28.029419291593943 22.107758512009394 56-57 21.790983047847114 28.140845092899774 27.992329691424207 22.07584216782891 58-59 21.79890723400588 28.14369574415106 27.99506773170511 22.062329290137953 60-61 21.843746886459588 28.08750614119006 28.017581684464798 22.05116528788556 62-63 21.79967493583074 28.195179170683648 27.89238761327662 22.112758280208993 64-65 21.917252685894965 28.20541388919626 27.74075119842999 22.136582226478787 66-67 21.960392001085996 28.20566661876267 27.653589132959528 22.180352247191802 68-69 21.91957968711774 28.15530982433484 27.747837182994388 22.177273305553037 70-71 21.994945427015825 27.98953235135858 27.819564844105425 22.195957377520166 72-73 22.045204948811996 27.9973087054526 27.78090386838472 22.176582477350678 74-75 21.954535705822238 28.184201230112283 27.814334305847126 22.046928758218353 76-77 22.085518865284595 28.09608801581592 27.79007401820283 22.028319100696656 78-79 22.077727564506308 28.103724939218523 27.750884998618197 22.067662497656972 80-81 22.062466345810947 28.19369825353441 27.77719616480233 21.966639235852313 82-83 22.088850306995134 28.097482489168918 27.92890036953809 21.88476683429786 84-85 22.096369510319338 28.224174812950082 27.879715024444025 21.799740652286552 86-87 21.89675148625698 28.238502873038296 27.974411239665837 21.89033440103889 88-89 22.01384809753699 28.204004617010526 27.88688588273333 21.895261402719154 90-91 21.94587050901284 28.306452939174704 27.94978817332111 21.797888378491347 92-93 21.963979994694096 28.24892839509754 27.96427248406265 21.82281912614571 94-95 21.844160889917106 28.351455608874147 27.9808231128417 21.823560388367042 96-97 21.885712726766435 28.485559887160843 28.037569568047804 21.591157818024914 98-99 22.87843338362712 30.492744513330088 28.22506231621614 18.403759786826654 100 21.8422104629239 31.482482512989495 22.09651999267851 24.57878703140809 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2805.0 1 1998.0 2 1372.0 3 1519.5 4 1479.5 5 1581.0 6 1818.5 7 2108.0 8 2453.0 9 2822.5 10 3156.5 11 3417.0 12 3697.0 13 4183.0 14 4932.0 15 5977.5 16 7332.0 17 8992.5 18 10906.5 19 13449.0 20 17130.0 21 22305.0 22 29443.0 23 38560.0 24 50487.5 25 66132.5 26 85242.5 27 105966.0 28 126826.5 29 150379.5 30 171829.0 31 191504.5 32 212754.5 33 232373.5 34 252278.5 35 269847.0 36 288642.5 37 306974.0 38 318866.0 39 328808.0 40 341100.5 41 351408.0 42 356215.0 43 360907.5 44 366265.5 45 371492.0 46 373367.0 47 371342.5 48 365356.5 49 353685.5 50 342322.5 51 330300.5 52 312579.0 53 293049.5 54 272723.0 55 249609.0 56 226738.5 57 203900.5 58 181069.0 59 158544.0 60 134114.5 61 110723.5 62 89581.5 63 70387.0 64 54036.5 65 41105.5 66 31642.5 67 25169.5 68 19995.5 69 15328.5 70 11921.0 71 9419.5 72 7448.0 73 5743.5 74 4407.0 75 3431.0 76 2604.5 77 1908.0 78 1461.5 79 1153.0 80 879.5 81 656.0 82 479.0 83 332.5 84 248.5 85 196.5 86 159.5 87 131.0 88 87.5 89 54.0 90 43.0 91 39.0 92 33.0 93 22.0 94 15.0 95 12.0 96 8.0 97 6.5 98 6.5 99 7.5 100 26.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.284553210499761E-4 6 0.0 7 1.1422766052498804E-5 8 1.1422766052498804E-5 9 0.0 10-11 2.8556915131247012E-5 12-13 9.138212841999044E-5 14-15 2.284553210499761E-5 16-17 7.424797934124223E-5 18-19 9.195326672261537E-4 20-21 3.9999238871626046E-4 22-23 0.0 24-25 8.5830077846164E-5 26-27 1.8325559287479348E-4 28-29 0.0 30-31 0.0 32-33 5.751986203976129E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 6.610025557964276E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 2.6792171916793697E-4 76-77 1.35512335552393E-5 78-79 6.17484950862606E-4 80-81 4.1709279647373065E-5 82-83 2.1131753312138185E-5 84-85 4.496843858017937E-4 86-87 1.085187979879168E-4 88-89 2.2005319859427082E-5 90-91 4.464911931472532E-5 92-93 6.269748290757083E-4 94-95 4.144644087515541E-4 96-97 4.2333318438276846E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2900.0 20-21 5538.0 22-23 6218.0 24-25 6778.0 26-27 8807.0 28-29 11608.0 30-31 15971.0 32-33 17572.0 34-35 22161.0 36-37 34436.0 38-39 40048.0 40-41 36279.0 42-43 43203.0 44-45 52663.0 46-47 59275.0 48-49 55549.0 50-51 55038.0 52-53 55578.0 54-55 61735.0 56-57 68990.0 58-59 71717.0 60-61 71382.0 62-63 70433.0 64-65 74590.0 66-67 78894.0 68-69 80736.0 70-71 80647.0 72-73 80530.0 74-75 83667.0 76-77 90378.0 78-79 94578.0 80-81 95020.0 82-83 93564.0 84-85 93005.0 86-87 94581.0 88-89 96440.0 90-91 99982.0 92-93 102291.0 94-95 117416.0 96-97 289155.0 98-99 524215.0 100-101 5610879.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.96779910718001 #Duplication Level Percentage of deduplicated Percentage of total 1 89.23711178610604 75.82280987146824 2 7.541428897119809 12.815572310231163 3 1.8731277690921841 4.7746663195891506 4 0.6394822333187953 2.1734159173296885 5 0.298929142142963 1.269967564844247 6 0.15450543054661267 0.7876791830191765 7 0.08125826211297899 0.48330349837099223 8 0.0471459488451689 0.32047100081549573 9 0.03195214757532021 0.2443413290600499 >10 0.09354904581000241 1.1942211284630302 >50 0.0011890645871328947 0.06592454661419647 >100 3.202727430870793E-4 0.04762733019462722 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1422766052498804E-5 0.0 2 0.0 2.284553210499761E-5 0.0 1.1422766052498804E-5 1.1422766052498804E-5 3 0.0 2.284553210499761E-5 0.0 2.284553210499761E-5 1.1422766052498804E-5 4 0.0 7.995936236749163E-5 0.0 2.284553210499761E-5 1.1422766052498804E-5 5 1.1422766052498804E-5 9.138212841999044E-5 0.0 3.426829815749641E-5 1.1422766052498804E-5 6 1.1422766052498804E-5 9.138212841999044E-5 0.0 3.426829815749641E-5 1.1422766052498804E-5 7 1.1422766052498804E-5 9.138212841999044E-5 0.0 3.426829815749641E-5 1.1422766052498804E-5 8 1.1422766052498804E-5 1.0280489447248924E-4 0.0 5.7113830262494024E-5 1.1422766052498804E-5 9 1.1422766052498804E-5 1.9418702289247968E-4 0.0 1.2565042657748684E-4 1.1422766052498804E-5 10-11 1.1422766052498804E-5 1.9418702289247968E-4 0.0 1.7134149078748206E-4 2.284553210499761E-5 12-13 1.1422766052498804E-5 1.9418702289247968E-4 0.0 2.0560978894497848E-4 2.284553210499761E-5 14-15 1.1422766052498804E-5 3.198374494699665E-4 0.0 2.684350022337219E-4 4.569106420999522E-5 16-17 1.1422766052498804E-5 3.312602155224653E-4 0.0 3.5981713065371236E-4 5.7113830262494024E-5 18-19 1.1422766052498804E-5 3.4268298157496413E-4 0.0 3.7695127973246055E-4 5.7113830262494024E-5 20-21 1.1422766052498804E-5 3.5981713065371236E-4 0.0 4.055081948637076E-4 5.7113830262494024E-5 22-23 1.1422766052498804E-5 4.569106420999522E-4 0.0 6.625204310449306E-4 6.853659631499282E-5 24-25 2.284553210499761E-5 5.425813874936933E-4 0.0 0.0014278457565623506 9.138212841999044E-5 26-27 2.284553210499761E-5 5.597155365724414E-4 0.0 0.0031641061965421687 9.138212841999044E-5 28-29 2.284553210499761E-5 5.711383026249402E-4 0.0 0.014004311180363535 1.0851627749873864E-4 30-31 2.284553210499761E-5 6.739431970974295E-4 0.0 0.04902651189732487 1.1993904355123744E-4 32-33 2.855691513124701E-5 6.796545801236789E-4 0.0 0.1391121563703567 1.3707319262998565E-4 34-35 3.426829815749641E-5 7.881708576224175E-4 0.0 0.26379164783338116 1.4849595868248445E-4 36-37 3.426829815749641E-5 8.795529860424079E-4 0.0 0.43825726513622165 1.5991872473498326E-4 38-39 3.426829815749641E-5 8.852643690686573E-4 0.0 0.6271098562821844 1.6563010776123266E-4 40-41 3.426829815749641E-5 9.423781993311514E-4 0.0 0.8056191327676094 1.7134149078748206E-4 42-43 3.426829815749641E-5 9.538009653836502E-4 0.0 1.039740145779625 1.7134149078748206E-4 44-45 3.426829815749641E-5 0.0011022969240661346 0.0 1.2101792380489595 1.7134149078748206E-4 46-47 3.426829815749641E-5 0.0012507928827486191 0.0 1.3686301373461967 1.7134149078748206E-4 48-49 3.426829815749641E-5 0.0012565042657748686 0.0 1.48160129360541 1.7134149078748206E-4 50-51 3.426829815749641E-5 0.001393577458404854 0.0 1.6136084894911122 1.7134149078748206E-4 52-53 3.426829815749641E-5 0.0014050002244573529 0.0 1.7439822298313075 1.8276425683998087E-4 54-55 3.426829815749641E-5 0.0014050002244573529 0.0 1.8611455412317877 1.9418702289247968E-4 56-57 3.426829815749641E-5 0.0014392685226148492 0.0 1.9572909630956703 1.9989840591872908E-4 58-59 3.426829815749641E-5 0.001462114054719847 0.0 2.002428023152119 2.0560978894497848E-4 60-61 3.426829815749641E-5 0.0014963823528773433 0.0 2.0196878226574446 2.0560978894497848E-4 62-63 3.426829815749641E-5 0.0015078051189298422 0.0 2.030368108916531 2.284553210499761E-4 64-65 3.426829815749641E-5 0.0016791466097173242 0.0 2.0347030486334545 2.284553210499761E-4 66-67 4.569106420999522E-5 0.001736260439979818 0.0 2.0386439029215664 2.284553210499761E-4 68-69 4.569106420999522E-5 0.0017819515041898135 0.0 2.0424476840170485 2.284553210499761E-4 70-71 4.569106420999522E-5 0.00181621980234731 0.0 2.045983030110297 2.284553210499761E-4 72-73 4.569106420999522E-5 0.001833353951426058 0.0 2.0487816077931593 2.513008531549737E-4 74-75 4.569106420999522E-5 0.001901890547741051 0.0 2.0514374009003653 2.513008531549737E-4 76-77 5.7113830262494024E-5 0.002033252357344787 0.0 2.0540817712415187 2.5701223618122306E-4 78-79 5.7113830262494024E-5 0.0020789434215547826 0.0 2.0556809584888684 2.627236192074725E-4 80-81 5.7113830262494024E-5 0.0020789434215547826 0.0 2.0566347594542522 2.7985776828622067E-4 82-83 5.7113830262494024E-5 0.0020789434215547826 0.0 2.0571659180756936 3.198374494699665E-4 84-85 5.7113830262494024E-5 0.00210178895365978 0.0 2.057457198610032 3.198374494699665E-4 86-87 5.7113830262494024E-5 0.002176036933001022 0.0 2.057474332759111 3.198374494699665E-4 88 5.7113830262494024E-5 0.0023302442747097562 0.0 2.057480044142137 3.312602155224653E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6615 0.0 35.9329 1 GTATCAA 10760 0.0 30.498676 1 TCAACGC 11295 0.0 27.58059 4 ATCAACG 11375 0.0 27.424133 3 CAACGCA 11585 0.0 26.853348 5 AACGCAG 12130 0.0 25.682009 6 TATCAAC 12980 0.0 24.624878 2 ACGCAGA 14610 0.0 21.322573 7 CGCAGAG 15060 0.0 20.685442 8 GTACATG 25870 0.0 19.778332 1 TACATGG 25170 0.0 19.73498 2 ACATGGG 25435 0.0 18.774366 3 CATGGGG 18050 0.0 17.542587 4 GCAGAGT 19835 0.0 15.490564 9 AGAGTAC 16255 0.0 15.292409 10-11 CAGAGTA 18630 0.0 14.31641 10-11 GTATAAT 5465 0.0 13.50899 1 TATACTG 5265 0.0 13.292675 5 ATGGGGG 10730 0.0 13.243764 5 TAGCCCT 5430 0.0 13.2031145 4 >>END_MODULE