##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139268_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12275236 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76203732457771 33.0 31.0 34.0 30.0 34.0 2 31.766206205729976 33.0 31.0 34.0 29.0 34.0 3 31.897216721535944 34.0 31.0 34.0 30.0 34.0 4 35.38715255657814 37.0 35.0 37.0 33.0 37.0 5 35.404875311562236 37.0 35.0 37.0 33.0 37.0 6 35.457667534864505 37.0 35.0 37.0 33.0 37.0 7 35.3510456336644 37.0 35.0 37.0 32.0 37.0 8 35.33243092026907 37.0 35.0 37.0 32.0 37.0 9 36.90880672273836 39.0 37.0 39.0 33.0 39.0 10-11 36.90955599550184 39.0 37.0 39.0 33.0 39.0 12-13 36.87581301899206 39.0 37.0 39.0 33.0 39.0 14-15 38.22004807076622 40.0 38.0 41.0 33.0 41.0 16-17 38.23489780563078 40.0 38.0 41.0 33.0 41.0 18-19 38.250138816068386 40.0 38.0 41.0 33.0 41.0 20-21 38.320414444877144 40.0 38.0 41.0 33.0 41.0 22-23 38.30587051586215 40.0 38.0 41.0 33.0 41.0 24-25 38.319054530739194 40.0 38.0 41.0 33.0 41.0 26-27 38.30605552423517 40.0 38.0 41.0 33.0 41.0 28-29 38.2851677922112 40.0 38.0 41.0 33.0 41.0 30-31 38.239619926367666 40.0 38.0 41.0 33.0 41.0 32-33 38.20114321839905 40.0 38.0 41.0 33.0 41.0 34-35 38.148962735767284 40.0 38.0 41.0 33.0 41.0 36-37 38.09467568766167 40.0 38.0 41.0 32.5 41.0 38-39 38.018673660304216 40.0 38.0 41.0 32.0 41.0 40-41 37.95753908582583 40.0 37.5 41.0 32.0 41.0 42-43 37.872603062374154 40.0 37.0 41.0 32.0 41.0 44-45 37.756891605790855 40.0 37.0 41.0 32.0 41.0 46-47 37.66520717828921 40.0 37.0 41.0 32.0 41.0 48-49 37.57232085764444 40.0 37.0 41.0 31.0 41.0 50-51 37.44596798007433 40.0 36.0 41.0 31.0 41.0 52-53 37.33663916801935 39.5 36.0 41.0 31.0 41.0 54-55 37.208890566552554 39.0 36.0 41.0 31.0 41.0 56-57 37.04495037345126 39.0 35.5 41.0 30.5 41.0 58-59 37.21187006029733 39.0 35.5 41.0 31.0 41.0 60-61 37.28912223493946 39.0 35.5 41.0 31.0 41.0 62-63 37.14755349051525 39.0 35.0 41.0 31.0 41.0 64-65 36.95151850598684 39.0 35.0 40.5 31.0 41.0 66-67 36.686357296599596 38.0 35.0 40.0 31.0 41.0 68-69 36.41413959239726 37.5 35.0 40.0 31.0 41.0 70-71 36.17278863186504 37.0 35.0 40.0 30.0 41.0 72-73 35.92455016578859 37.0 34.5 39.0 30.0 41.0 74-75 35.639355056765254 36.0 34.0 39.0 30.0 41.0 76-77 35.36100965854784 36.0 34.0 39.0 30.0 40.5 78-79 35.01481285214345 35.0 34.0 37.5 30.0 39.5 80-81 34.681479639538296 35.0 34.0 37.0 30.0 39.0 82-83 34.38038327386839 35.0 34.0 37.0 30.0 39.0 84-85 34.12762735524772 35.0 34.0 36.0 29.5 37.5 86-87 33.904458314996255 35.0 34.0 36.0 29.0 37.0 88-89 33.73316143123563 35.0 34.0 35.5 29.0 37.0 90-91 33.5842518397517 35.0 33.0 35.0 29.0 36.0 92-93 33.46939106071372 35.0 33.0 35.0 29.0 36.0 94-95 33.438008358398065 35.0 33.0 35.0 29.0 36.0 96-97 33.45062731670143 35.0 33.0 35.0 29.0 36.0 98-99 33.55595607238786 35.0 33.0 35.0 30.0 36.0 100 33.18616555590867 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 4.0 16 64.0 17 507.0 18 1899.0 19 5779.0 20 14700.0 21 29755.0 22 48381.0 23 68939.0 24 89510.0 25 111317.0 26 127599.0 27 135711.0 28 154449.0 29 189976.0 30 225585.0 31 262199.0 32 329844.0 33 431417.0 34 580823.0 35 808689.0 36 1244803.0 37 2238866.0 38 3276426.0 39 1795858.0 40 102136.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.731257631217844 20.96108783570434 14.567133373240237 23.74052115983758 2 13.768142624712063 21.258018990429186 42.62430473841806 22.349533646440687 3 17.547719652803416 26.72197096658671 30.73782858431398 24.992480796295894 4 11.897115460753668 18.407800876496385 40.24732396183666 29.447759700913284 5 12.838187586790747 38.612711762092296 35.94728368890351 12.60181696221345 6 28.918222020334273 38.64113081003086 19.737991188112392 12.702655981522474 7 25.982359931817196 33.101139562612076 23.800935476922806 17.11556502864792 8 23.73452728196242 37.36269814793769 21.826612688066664 17.076161882033215 9 25.117928486262915 17.797295302509866 21.864206928485938 35.22056928274129 10-11 23.291077244725212 27.559969737437978 29.696870112363648 19.45208290547316 12-13 24.04717828367124 25.150787472391546 29.52303355115964 21.279000692777583 14-15 21.445091918010846 26.731284856263017 26.948009866696626 24.87561335902952 16-17 21.239402943734227 29.810146046202817 27.60239018022073 21.348060829842222 18-19 21.247566878236803 29.43134878743195 28.694374652218425 20.626709682112825 20-21 22.367955768727548 28.515800413995752 28.288299589048517 20.827944228228187 22-23 22.007202386506215 28.44238808521633 28.06984311801318 21.480566410264274 24-25 21.66193355723169 28.587907529782104 28.192420691238024 21.557738221748178 26-27 21.590856921222702 28.745171556281974 28.090191726159542 21.57377979633578 28-29 21.463496890447534 28.814215760555832 28.18991327239866 21.532374076597975 30-31 21.804282470031005 28.56717656330089 28.152219995730093 21.476320970938012 32-33 21.618304842820006 28.648275753471854 28.0846793721346 21.648740031573535 34-35 21.736209266522525 28.610377311489344 28.15407504302683 21.4993383789613 36-37 21.641271808940704 28.369009085166663 28.27947457450739 21.710244531385243 38-39 21.454323809423236 28.351829710784614 28.508323452354983 21.685523027437164 40-41 21.653736217344875 28.17056852189618 28.530371669748746 21.645323591010204 42-43 21.45347003491192 28.153867721750082 28.50517910370262 21.887483139635375 44-45 21.430517491763858 28.179105315176496 28.5452759013599 21.845101291699738 46-47 21.323254322425385 28.052801726870687 28.588353808437567 22.03559014226636 48-49 21.14537303673125 28.013507616326493 28.79613946265293 22.044979884289322 50-51 21.02140044668614 28.057739570909828 28.797018855367707 22.123841127036325 52-53 21.027423993636756 27.996555469883823 28.82534695484626 22.150673581633164 54-55 20.988501936991685 27.903164645967475 28.90087022323118 22.207463193809662 56-57 20.99120629239211 27.94883769270627 28.765333668397204 22.29462234650442 58-59 20.920934671089423 27.97791775215587 28.750588133716704 22.350559443038 60-61 20.947138402265345 27.801242822363463 28.734953970913196 22.516664804457992 62-63 20.93493774311948 27.736554944212394 28.679438921355633 22.64906839131249 64-65 21.109838298991676 27.790648590913776 28.576532124769855 22.522980985324697 66-67 20.944837742243212 27.947581313197666 28.265124843087502 22.842456101471615 68-69 21.041253218073027 28.05405734759978 28.097934305558148 22.80675512876904 70-71 21.18730472235294 28.038966743474454 27.92629305625703 22.84743547791558 72-73 21.327567624928285 27.980434616800366 27.55320181416423 23.138795944107116 74-75 21.420617939203474 27.91603015025526 27.36119399143403 23.302157919107238 76-77 21.643871956744658 27.73734691359643 27.463882703693777 23.154898425965133 78-79 21.804025893995593 27.452981908416447 27.63412330141627 23.108868896171693 80-81 21.95063794670178 27.35140848988372 27.61472377278712 23.083229790627378 82-83 21.92391340421005 27.48498555599252 27.533078972388804 23.058022067408626 84-85 22.031556929393858 27.31036833767493 27.644334210296023 23.01374052263519 86-87 21.714848535025176 27.539314128115635 27.87675433765489 22.869082999204302 88-89 21.865817810012956 27.701464785051677 27.66008248243083 22.772634922504533 90-91 21.797779784042902 27.95156689411695 27.945732568839908 22.30492075300024 92-93 21.504087180677775 27.923755456836336 28.246845346765692 22.325312015720197 94-95 21.34602688572435 27.954298922185938 28.4941767516372 22.205497440452515 96-97 21.453652323137224 27.85465453324749 28.79935220242841 21.892340941186877 98-99 22.781711420619295 29.885860698051147 28.94179029382596 18.3906375875036 100 22.179132484078618 31.15015215085367 22.63197086505338 24.038744500014335 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5258.0 1 3797.0 2 2515.0 3 2646.5 4 2560.5 5 2622.0 6 2946.0 7 3439.5 8 3903.0 9 4459.5 10 5003.0 11 5420.5 12 6005.0 13 6906.0 14 7941.0 15 9180.5 16 10762.0 17 12687.0 18 15205.0 19 18681.0 20 23507.5 21 29750.0 22 38073.0 23 49059.5 24 63392.0 25 82073.5 26 105825.5 27 132808.0 28 161280.0 29 192504.0 30 221811.5 31 248781.0 32 277456.5 33 304971.0 34 332486.0 35 358940.5 36 386340.5 37 414456.0 38 433842.5 39 448265.0 40 465130.5 41 478346.5 42 487853.5 43 499184.5 44 509513.0 45 516913.0 46 518752.0 47 516580.0 48 509953.5 49 496617.5 50 481301.5 51 459080.5 52 428757.0 53 396220.0 54 361499.5 55 325241.0 56 289789.0 57 253751.0 58 220863.5 59 191631.5 60 160290.5 61 129870.0 62 102254.5 63 79246.0 64 60474.5 65 45465.0 66 34513.5 67 26844.0 68 20914.0 69 15656.0 70 12098.0 71 9583.0 72 7439.0 73 5747.0 74 4499.0 75 3480.5 76 2676.0 77 2039.0 78 1525.0 79 1142.5 80 887.5 81 687.5 82 526.0 83 370.5 84 267.0 85 203.5 86 160.0 87 133.0 88 95.0 89 65.5 90 56.5 91 50.5 92 33.0 93 17.0 94 12.5 95 8.0 96 5.5 97 7.5 98 6.5 99 6.5 100 30.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.792226234998659E-4 6 0.0 7 0.0 8 8.146482886357541E-6 9 0.0 10-11 2.4439448659072623E-5 12-13 9.775779463629049E-5 14-15 2.4439448659072623E-5 16-17 8.961131174993295E-5 18-19 9.001863589425083E-4 20-21 4.319823601225835E-4 22-23 0.0 24-25 1.0202415515735574E-4 26-27 1.7971589204760445E-4 28-29 0.0 30-31 0.0 32-33 7.791271028999316E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 5.422869073169104E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.429953504168091E-4 76-77 9.038644362425776E-6 78-79 3.3856379317357484E-4 80-81 1.3908719761226226E-5 82-83 2.350376556178442E-5 84-85 4.5281041071191185E-4 86-87 1.015846037213633E-4 88-89 1.4747789208079113E-5 90-91 3.0022247986870667E-5 92-93 5.864036151833868E-4 94-95 4.216313761204854E-4 96-97 3.7394165164044465E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4258.0 20-21 7893.0 22-23 8772.0 24-25 9836.0 26-27 12544.0 28-29 16009.0 30-31 18398.0 32-33 18646.0 34-35 21557.0 36-37 28454.0 38-39 31194.0 40-41 27343.0 42-43 19218.0 44-45 19275.0 46-47 20305.0 48-49 20278.0 50-51 20028.0 52-53 19865.0 54-55 20181.0 56-57 19965.0 58-59 20234.0 60-61 22159.0 62-63 64456.0 64-65 110564.0 66-67 117805.0 68-69 119907.0 70-71 118666.0 72-73 118308.0 74-75 122975.0 76-77 132318.0 78-79 142228.0 80-81 148013.0 82-83 146253.0 84-85 151786.0 86-87 161699.0 88-89 175303.0 90-91 184667.0 92-93 196549.0 94-95 218609.0 96-97 456196.0 98-99 820228.0 100-101 8162294.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.25001569839927 #Duplication Level Percentage of deduplicated Percentage of total 1 86.51988862872851 70.29742309307949 2 9.07844732724922 14.752479757121801 3 2.4882706452234853 6.065160869588228 4 0.9233263535953211 3.0008112289746243 5 0.40920394182390385 1.6623913348519526 6 0.21617536439386964 1.0538551050365452 7 0.1223139547513177 0.6956607520574503 8 0.07103669118990878 0.4617385819473944 9 0.04262262124371459 0.3116779780642863 >10 0.12661582738543112 1.5018329359486577 >50 0.0016815587815032988 0.08951732786454282 >100 3.3274785452672595E-4 0.04768511587518212 >500 6.747135144011187E-5 0.03977181956119165 >1k 1.686642793531185E-5 0.019994100028646915 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6292965772715082E-5 0.0 0.0 0.0 3 0.0 1.6292965772715082E-5 0.0 0.0 0.0 4 0.0 5.7025380204502786E-5 0.0 0.0 0.0 5 0.0 5.7025380204502786E-5 0.0 1.6292965772715082E-5 0.0 6 0.0 5.7025380204502786E-5 0.0 1.6292965772715082E-5 0.0 7 0.0 5.7025380204502786E-5 0.0 1.6292965772715082E-5 0.0 8 0.0 9.775779463629049E-5 0.0 1.6292965772715082E-5 2.4439448659072623E-5 9 0.0 1.2219724329536313E-4 0.0 4.8878897318145245E-5 3.2585931545430164E-5 10-11 0.0 1.2219724329536313E-4 0.0 1.0183103607946925E-4 3.2585931545430164E-5 12-13 0.0 1.2219724329536313E-4 0.0 1.547831748407933E-4 3.2585931545430164E-5 14-15 0.0 2.0366207215893854E-4 0.0 1.9551558927258098E-4 5.7025380204502786E-5 16-17 0.0 2.1995503793165362E-4 0.0 2.3217476226118994E-4 5.7025380204502786E-5 18-19 0.0 2.4439448659072625E-4 0.0 2.973466253520503E-4 5.7025380204502786E-5 20-21 0.0 2.688339352497989E-4 0.0 4.195438686474134E-4 5.7025380204502786E-5 22-23 0.0 3.0141986679522905E-4 0.0 7.820623570903239E-4 6.109862164768156E-5 24-25 0.0 3.462255226701955E-4 0.0 0.001828885407987268 7.331834597721787E-5 26-27 0.0 3.7881145421562567E-4 0.0 0.004590543106462475 8.961131174993295E-5 28-29 0.0 3.9103117854516196E-4 0.0 0.019628950514678493 8.961131174993295E-5 30-31 0.0 4.4805655874966476E-4 0.0 0.07110250263212863 9.368455319311173E-5 32-33 0.0 4.4805655874966476E-4 0.0 0.19792287496549965 9.775779463629049E-5 34-35 0.0 5.254481461700614E-4 0.0 0.38098249190483996 9.775779463629049E-5 36-37 0.0 5.784002849313854E-4 0.0 0.6586187019133481 9.775779463629049E-5 38-39 0.0 5.987664921472792E-4 0.0 1.0253244825598467 9.775779463629049E-5 40-41 0.0 6.76158079567676E-4 0.0 1.406180703979948 1.0183103607946925E-4 42-43 0.0 6.883778038972123E-4 0.0 1.853878817482613 1.0590427752264803E-4 44-45 0.0 7.454031841017149E-4 0.0 2.4146460402064776 1.0590427752264803E-4 46-47 0.0 7.861355985335028E-4 0.0 3.045273426922301 1.2219724329536313E-4 48-49 0.0 7.942820814198603E-4 0.0 3.6803243538454167 1.4663669195443574E-4 50-51 0.0 9.124060832720446E-4 0.0 4.30560764778779 1.4663669195443574E-4 52-53 0.0 9.286990490447597E-4 0.0 4.914439119541164 1.547831748407933E-4 54-55 0.0 9.327722904879385E-4 0.0 5.543351671609409 1.6292965772715082E-4 56-57 0.0 9.368455319311173E-4 0.0 6.234580744516847 1.6292965772715082E-4 58-59 0.0 9.368455319311173E-4 0.0 6.946310441607803 1.6292965772715082E-4 60-61 4.0732414431787704E-6 9.612849805901899E-4 0.0 7.648891638417379 1.6292965772715082E-4 62-63 8.146482886357541E-6 9.694314634765474E-4 0.0 8.318870610715752 1.6292965772715082E-4 64-65 8.146482886357541E-6 0.0010753357409991956 0.0 8.492398842678055 1.6292965772715082E-4 66-67 8.146482886357541E-6 0.0010916287067719106 0.0 8.496211396668869 1.6292965772715082E-4 68-69 8.146482886357541E-6 0.0011323611212036983 0.0 8.499694018102788 1.6292965772715082E-4 70-71 8.146482886357541E-6 0.0011405076040900558 0.0 8.502618605458991 1.6292965772715082E-4 72-73 8.146482886357541E-6 0.0011405076040900558 0.0 8.505091063015001 1.8736910638622345E-4 74-75 8.146482886357541E-6 0.0011771667770786648 0.0 8.50716434290958 1.8736910638622345E-4 76-77 8.146482886357541E-6 0.0012382653987263463 0.0 8.509107279077973 1.8736910638622345E-4 78-79 8.146482886357541E-6 0.0012545583644990614 0.0 8.510703989723702 1.8736910638622345E-4 80-81 8.146482886357541E-6 0.0012545583644990614 0.0 8.51151049152945 1.9144234782940222E-4 82-83 8.146482886357541E-6 0.0012545583644990614 0.0 8.512011500226961 2.0366207215893854E-4 84-85 8.146482886357541E-6 0.0012667780888285978 0.0 8.512170356643246 2.0366207215893854E-4 86-87 8.146482886357541E-6 0.0012912175374876701 0.0 8.51221516229912 2.077353136021173E-4 88 8.146482886357541E-6 0.0013767556077944245 0.0 8.512227382023449 2.1180855504529606E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10465 0.0 39.970222 1 GTATCAA 17470 0.0 32.512398 1 ATCAACG 18225 0.0 29.788437 3 TCAACGC 18475 0.0 29.361513 4 CAACGCA 19135 0.0 28.325771 5 AACGCAG 20155 0.0 26.957804 6 TATCAAC 20820 0.0 26.710054 2 ACGCAGA 23995 0.0 22.551908 7 CGCAGAG 24215 0.0 22.310652 8 TCGGTGG 5160 0.0 21.961159 94 GTACATG 42790 0.0 21.176554 1 TACATGG 42720 0.0 20.747448 2 ACATGGG 43150 0.0 20.030493 3 CATGGGG 28120 0.0 17.803171 4 CTCGGTG 6980 0.0 17.56407 94 GCAGAGT 30910 0.0 17.492487 9 GTGGTAT 6650 0.0 16.023075 1 AGAGTAC 27025 0.0 15.787388 10-11 CAGAGTA 29930 0.0 15.571712 10-11 TCTCGGT 7055 0.0 15.511689 92-93 >>END_MODULE