##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139267_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10875776 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.804052051090423 33.0 31.0 34.0 30.0 34.0 2 31.915571449798158 33.0 31.0 34.0 30.0 34.0 3 31.967161791489637 34.0 31.0 34.0 30.0 34.0 4 35.47143891157744 37.0 35.0 37.0 33.0 37.0 5 35.512873012463665 37.0 35.0 37.0 33.0 37.0 6 35.59859305671614 37.0 35.0 37.0 33.0 37.0 7 35.527287616074474 37.0 35.0 37.0 33.0 37.0 8 35.498794384878835 37.0 35.0 37.0 33.0 37.0 9 37.08426157361093 39.0 37.0 39.0 33.0 39.0 10-11 37.06307393605753 39.0 37.0 39.0 33.0 39.0 12-13 37.00862480985265 39.0 37.0 39.0 33.0 39.0 14-15 38.37067221686066 40.0 38.0 41.0 33.0 41.0 16-17 38.379532688058305 40.0 38.0 41.0 33.0 41.0 18-19 38.39279670710393 40.0 38.0 41.0 33.0 41.0 20-21 38.44571130356732 40.0 38.0 41.0 33.0 41.0 22-23 38.42867576267396 40.0 38.0 41.0 33.0 41.0 24-25 38.43924464331894 40.0 38.0 41.0 33.0 41.0 26-27 38.416060153962704 40.0 38.0 41.0 33.0 41.0 28-29 38.39070016631643 40.0 38.0 41.0 33.0 41.0 30-31 38.342804189194695 40.0 38.0 41.0 33.0 41.0 32-33 38.30050889280173 40.0 38.0 41.0 33.0 41.0 34-35 38.24481734739844 40.0 38.0 41.0 33.0 41.0 36-37 38.1885362379724 40.0 38.0 41.0 33.0 41.0 38-39 38.10956898845768 40.0 38.0 41.0 33.0 41.0 40-41 38.04599650131688 40.0 38.0 41.0 32.5 41.0 42-43 37.963097176567935 40.0 37.5 41.0 32.0 41.0 44-45 37.843746763503205 40.0 37.0 41.0 32.0 41.0 46-47 37.74234693050796 40.0 37.0 41.0 32.0 41.0 48-49 37.64283008721372 40.0 37.0 41.0 31.5 41.0 50-51 37.51252775424952 40.0 36.0 41.0 31.0 41.0 52-53 37.39264087209831 40.0 36.0 41.0 31.0 41.0 54-55 37.25600832902842 39.0 36.0 41.0 31.0 41.0 56-57 37.08402128949844 39.0 35.5 41.0 31.0 41.0 58-59 37.236339627880106 39.0 35.5 41.0 31.0 41.0 60-61 37.304690411282245 39.0 35.5 41.0 31.0 41.0 62-63 37.15388700697388 39.0 35.0 41.0 31.0 41.0 64-65 36.957300883401345 39.0 35.0 40.5 31.0 41.0 66-67 36.699753620396024 38.0 35.0 40.0 31.0 41.0 68-69 36.437120382995026 37.5 35.0 40.0 31.0 41.0 70-71 36.207335442495605 37.0 35.0 40.0 31.0 41.0 72-73 35.97677693997133 37.0 35.0 39.0 31.0 41.0 74-75 35.691364721388524 36.0 34.0 39.0 30.5 41.0 76-77 35.42956291482215 36.0 34.0 39.0 30.0 40.5 78-79 35.10247561192499 35.0 34.0 37.5 30.0 39.5 80-81 34.792720979291445 35.0 34.0 37.0 30.0 39.0 82-83 34.50008214782206 35.0 34.0 36.5 30.0 39.0 84-85 34.25330257197231 35.0 34.0 36.0 30.0 37.5 86-87 34.059072774437965 35.0 34.0 36.0 30.0 37.0 88-89 33.93389710062303 35.0 34.0 35.5 30.0 37.0 90-91 33.81733017082099 35.0 34.0 35.0 30.0 36.0 92-93 33.71694815113702 35.0 34.0 35.0 30.0 36.0 94-95 33.6731004743837 35.0 34.0 35.0 30.0 36.0 96-97 33.665522824338524 35.0 34.0 35.0 30.0 36.0 98-99 33.69257930232503 35.0 34.0 35.0 30.0 36.0 100 33.33754933264174 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 35.0 17 400.0 18 1435.0 19 4527.0 20 11234.0 21 22998.0 22 38190.0 23 54445.0 24 71812.0 25 89980.0 26 105437.0 27 115097.0 28 132380.0 29 161814.0 30 192331.0 31 224520.0 32 280735.0 33 363312.0 34 490565.0 35 685009.0 36 1050827.0 37 1918697.0 38 2971039.0 39 1795056.0 40 93901.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.85219298374663 20.64266494639095 14.495002471547776 24.010139598314638 2 13.917903421328282 21.082973757458777 42.2245364376758 22.774586383537137 3 17.700070321418902 26.19794670283757 30.589109227700167 25.512873748043358 4 12.153606326573845 18.19654983699554 39.8000473713324 29.849796465098215 5 13.159634482488485 38.19969146058601 35.86075563652667 12.779918420398836 6 29.507439285251923 38.19502167017783 19.453241773276684 12.844297271293561 7 26.265224660750647 32.8056315245919 23.599603375428106 17.329540439229348 8 23.961177574823168 37.0827332228983 21.719424894370757 17.236664307907777 9 25.10903130038721 17.68782291948639 21.654620323184297 35.54852545694211 10-11 23.538528087220648 27.235483526757893 29.55903780085159 19.66695058516987 12-13 24.237130710477345 24.76830711364639 29.34855941864506 21.6460027572312 14-15 21.61880156759418 26.420850598771178 26.652668582484335 25.30767925115031 16-17 21.55757021815428 29.43379668918048 27.3377972945631 21.67083579810214 18-19 21.57730899461413 29.110409238966778 28.356639932693835 20.955641833725263 20-21 22.508388200206642 28.2717775487068 28.009277604477116 21.210556646609437 22-23 22.21506008037227 28.139753603091762 27.830546986555284 21.814639329980682 24-25 21.928621606837847 28.288312869821258 27.90053541118293 21.882530112157966 26-27 21.894758057378212 28.42411836468561 27.77462408982015 21.90649948811603 28-29 21.793726484933742 28.5233507607897 27.855592108906833 21.827330645369724 30-31 22.13804773349116 28.25828113807645 27.800754001096962 21.802917127335437 32-33 21.969908404915213 28.38880355594742 27.729571437483063 21.911716601654305 34-35 22.068832117334622 28.391603944518867 27.789628449632904 21.749935488513607 36-37 21.99953104765112 28.23534649922031 27.871395045496033 21.893727407632536 38-39 21.835021015207133 28.326690559035345 28.0283980889046 21.809890336852927 40-41 22.11805591119481 28.137430870219266 27.954214442752217 21.79029877583371 42-43 21.910071969928673 28.20307135790833 27.897213041495284 21.989643630667718 44-45 21.95782627413724 28.237366925014257 27.922807817736405 21.881998983112098 46-47 21.941402878649097 28.10318805459192 27.83598864311146 22.119420423647522 48-49 21.832946478392955 28.133118141236285 28.026414959079922 22.007520421290845 50-51 21.714892624295352 28.126462475366438 28.093650968569506 22.064993931768704 52-53 21.904649709895168 27.954116519593093 28.027551638582093 22.113682131929647 54-55 21.86355123238348 27.7156075348591 28.202783155401274 22.218058077356144 56-57 21.76297050813689 27.632348032049524 28.277510996545168 22.32717046326842 58-59 21.599652635781467 27.636479068966597 28.450415341815035 22.313452953436904 60-61 21.512169214550063 27.48603696629115 28.754157767077803 22.24763605208098 62-63 21.39115383559427 27.68051334837783 28.76354242281613 22.16479039321177 64-65 21.235777913764686 27.98710861340275 28.458492697653814 22.31862077517875 66-67 21.13859846694695 28.201926694453803 28.146218555307946 22.513256283291298 68-69 21.229343129659867 28.3785623245615 28.17452908122633 22.2175654645523 70-71 21.29268072485508 28.332530466233212 27.87925664014278 22.49553216876893 72-73 21.5794830217494 28.22800570903335 27.511288870757095 22.681222398460157 74-75 21.772590505722984 28.09241707522728 27.531600177559195 22.603392241490535 76-77 21.988323519193216 27.69713897667897 27.605006232695423 22.709531271432397 78-79 22.319386084592637 27.523637207203922 27.42754219355929 22.729434514644154 80-81 22.66371916524101 27.482012090568546 27.153779549021923 22.700489195168522 82-83 22.369250635475968 27.72346648416093 27.085076565427425 22.82220631493568 84-85 22.815656136444208 27.704065460231657 27.023674348194433 22.456604055129702 86-87 22.605176017047803 28.000012728240236 27.072447803608167 22.322363451103797 88-89 22.54229369174496 28.23162947991217 26.944661513414463 22.28141531492841 90-91 22.71008367991422 28.312124258997596 27.34580180814951 21.63199025293867 92-93 22.84662444585401 28.072450278062373 27.55757308316053 21.523352192923088 94-95 22.522123361618974 28.13661912773441 27.949250928115227 21.39200658253139 96-97 22.779279935814277 27.87461484561586 28.22915464493734 21.116950573632522 98-99 23.47325091823707 29.970158477209115 28.682171250390393 17.87441935416342 100 22.66694363145754 31.179831668577762 22.59215218348032 23.56107251648438 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3630.0 1 2659.0 2 1947.0 3 2183.0 4 2157.0 5 2223.0 6 2482.5 7 2842.0 8 3150.0 9 3563.0 10 4071.0 11 4532.5 12 5096.5 13 5821.0 14 6675.0 15 7748.0 16 9088.5 17 10829.5 18 13174.0 19 16328.0 20 20518.0 21 26387.5 22 34422.5 23 44819.0 24 58292.5 25 75533.5 26 96968.5 27 121141.5 28 146526.0 29 173079.5 30 197400.0 31 221238.0 32 248104.5 33 274703.5 34 299962.0 35 322975.5 36 347897.5 37 371363.0 38 387501.5 39 399604.0 40 412726.0 41 425772.5 42 434417.5 43 443346.5 44 452064.5 45 460275.0 46 464313.5 47 462462.5 48 456716.0 49 445303.5 50 431906.5 51 414215.5 52 391200.0 53 366429.0 54 341942.0 55 315737.5 56 287493.0 57 257949.5 58 228919.0 59 201167.0 60 169612.0 61 138479.5 62 110776.5 63 86945.0 64 66796.0 65 50433.0 66 38822.0 67 30620.0 68 24422.0 69 18864.0 70 14722.5 71 11689.0 72 9079.5 73 6877.0 74 5176.5 75 3896.5 76 2920.5 77 2213.5 78 1743.5 79 1369.0 80 1035.5 81 785.5 82 597.0 83 406.0 84 286.5 85 222.5 86 176.0 87 143.0 88 93.5 89 51.5 90 34.0 91 25.5 92 22.0 93 15.5 94 10.5 95 8.0 96 6.5 97 5.0 98 2.5 99 10.5 100 32.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.6550543152047266E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 2.2986865488954535E-5 12-13 9.654483505360905E-5 14-15 1.838949239116363E-5 16-17 8.735008885802723E-5 18-19 9.286693657537632E-4 20-21 4.829570882967907E-4 22-23 0.0 24-25 9.672433816947347E-5 26-27 1.6595634278688274E-4 28-29 0.0 30-31 0.0 32-33 5.561494510758572E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 2.4326437437024934E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.9327128628570457E-4 76-77 0.0 78-79 4.3216159386317735E-4 80-81 3.776817494952418E-5 82-83 1.0913673064334575E-5 84-85 3.8628963179865614E-4 86-87 1.0606855612726506E-4 88-89 2.2606440020904174E-5 90-91 2.29062302541137E-5 92-93 6.039306243986463E-4 94-95 3.065801293154985E-4 96-97 3.3713405828795015E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3607.0 20-21 6834.0 22-23 7709.0 24-25 8754.0 26-27 11696.0 28-29 16447.0 30-31 25468.0 32-33 30263.0 34-35 39033.0 36-37 56102.0 38-39 61402.0 40-41 58173.0 42-43 61459.0 44-45 70777.0 46-47 76727.0 48-49 46003.0 50-51 45325.0 52-53 16960.0 54-55 16688.0 56-57 16717.0 58-59 16288.0 60-61 18059.0 62-63 86925.0 64-65 93097.0 66-67 98127.0 68-69 98647.0 70-71 97424.0 72-73 95329.0 74-75 96771.0 76-77 101317.0 78-79 104293.0 80-81 104887.0 82-83 102363.0 84-85 103217.0 86-87 107757.0 88-89 114138.0 90-91 120201.0 92-93 125348.0 94-95 150696.0 96-97 367980.0 98-99 693794.0 100-101 7302974.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.80359777134856 #Duplication Level Percentage of deduplicated Percentage of total 1 88.12284673815883 72.968887557727 2 8.069912568773367 13.364355887893204 3 2.1109778082525668 5.243896720163654 4 0.7767366134754456 2.57266344466001 5 0.37032165865293465 1.533198283455812 6 0.18517437056054234 0.9199862458474678 7 0.1111686001181907 0.644361203429339 8 0.06892828143067353 0.45660077525246445 9 0.04361268896740666 0.32501587994856646 >10 0.1376452450306069 1.7036768363273596 >50 0.002060257142318363 0.11604735180297389 >100 5.596673642793597E-4 0.08281807921091468 >500 1.8501240381938443E-5 0.009865882078559481 >1k 3.7000832466653775E-5 0.0586258522027122 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.194746195581814E-6 0.0 2 0.0 4.597373097790907E-5 0.0 1.838949239116363E-5 0.0 3 0.0 4.597373097790907E-5 0.0 3.677898478232726E-5 0.0 4 0.0 8.275271576023633E-5 0.0 3.677898478232726E-5 0.0 5 0.0 8.275271576023633E-5 0.0 3.677898478232726E-5 0.0 6 0.0 8.275271576023633E-5 0.0 4.597373097790907E-5 0.0 7 0.0 8.275271576023633E-5 0.0 5.516847717349088E-5 0.0 8 0.0 9.194746195581814E-5 0.0 6.43632233690727E-5 0.0 9 0.0 1.930896701072181E-4 0.0 1.5631068532489083E-4 0.0 10-11 0.0 2.022844163027999E-4 0.0 2.620502665740817E-4 0.0 12-13 0.0 2.068817894005908E-4 0.0 3.0342662445419986E-4 0.0 14-15 0.0 2.850371320630362E-4 0.0 3.402056092365271E-4 0.0 16-17 0.0 3.0802399755199076E-4 0.0 3.6778984782327256E-4 0.0 18-19 0.0 3.218161168453635E-4 0.0 3.861793402144362E-4 0.0 20-21 0.0 3.402056092365271E-4 0.0 4.643346828768816E-4 0.0 22-23 0.0 3.999714595078089E-4 0.0 5.93061129615027E-4 0.0 24-25 4.597373097790907E-6 4.505425635835089E-4 0.0 7.677613073310814E-4 0.0 26-27 9.194746195581814E-6 4.781268021702543E-4 0.0 0.0012504854825991269 0.0 28-29 9.194746195581814E-6 4.96516294561418E-4 0.0 0.004353712323607989 0.0 30-31 9.194746195581814E-6 5.838663834194452E-4 0.0 0.01464263331646404 0.0 32-33 9.194746195581814E-6 5.884637565172361E-4 0.0 0.04479680346487459 0.0 34-35 9.194746195581814E-6 6.620217260818906E-4 0.0 0.08412273294337802 0.0 36-37 9.194746195581814E-6 7.769560535266632E-4 0.0 0.13891882289594784 0.0 38-39 9.194746195581814E-6 8.643061423846905E-4 0.0 0.20085463326938693 0.0 40-41 9.194746195581814E-6 9.608509774382995E-4 0.0 0.2568920139583603 0.0 42-43 9.194746195581814E-6 0.0010022273353184178 0.0 0.3609489566537597 0.0 44-45 9.194746195581814E-6 0.001084980051078654 0.0 0.46000395741876254 0.0 46-47 9.194746195581814E-6 0.001140148528252145 0.0 0.5628701804818341 0.0 48-49 9.194746195581814E-6 0.001140148528252145 0.0 0.6295642720114868 0.0 50-51 9.194746195581814E-6 0.0012458881095013356 0.0 0.9626163687078513 0.0 52-53 9.194746195581814E-6 0.0012504854825991266 0.0 1.4150944263655303 0.0 54-55 9.194746195581814E-6 0.0012550828556969176 0.0 2.0245911648051598 0.0 56-57 9.194746195581814E-6 0.0012688749749902902 0.0 2.6903735420810433 0.0 58-59 9.194746195581814E-6 0.0012918618404792448 0.0 3.3735064054279897 0.0 60-61 9.194746195581814E-6 0.0013102513328704084 0.0 4.046281387185614 0.0 62-63 9.194746195581814E-6 0.0013608224369461084 0.0 4.538370411453858 0.0 64-65 9.194746195581814E-6 0.0014619646450975085 0.0 4.545441171278261 0.0 66-67 9.194746195581814E-6 0.0014619646450975085 0.0 4.54893977220568 0.0 68-69 9.194746195581814E-6 0.0015171331222709993 0.0 4.552305049313262 0.0 70-71 9.194746195581814E-6 0.0015723015994444903 0.0 4.555514015735521 0.0 72-73 9.194746195581814E-6 0.0015998858380312357 0.0 4.55838737392164 0.0 74-75 9.194746195581814E-6 0.0016412621959113539 0.0 4.560869955394447 0.0 76-77 9.194746195581814E-6 0.00172401491167159 0.0 4.563141057704756 0.0 78-79 9.194746195581814E-6 0.0017515991502583357 0.0 4.5648788647357215 0.0 80-81 9.194746195581814E-6 0.0017561965233561265 0.0 4.565710989266421 0.0 82-83 9.194746195581814E-6 0.0017699886426494993 0.0 4.5661707265762 0.0 84-85 9.194746195581814E-6 0.0017975728812362445 0.0 4.566363816246307 0.0 86-87 9.194746195581814E-6 0.0018205597467251993 0.0 4.566455763708263 0.0 88 9.194746195581814E-6 0.0019125072086810173 0.0 4.566469555827557 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7745 0.0 34.937355 1 GTATCAA 12985 0.0 30.207697 1 TCAACGC 13240 0.0 28.350616 4 ATCAACG 13370 0.0 28.042576 3 CAACGCA 13720 0.0 27.358759 5 AACGCAG 14385 0.0 26.154072 6 TATCAAC 15370 0.0 24.928768 2 ACGCAGA 17385 0.0 21.491438 7 TGTAGAT 16055 0.0 21.199747 94 CGCAGAG 17955 0.0 20.833284 8 GTACATG 31010 0.0 20.006716 1 GTGTAGA 16355 0.0 19.70727 94 TACATGG 30375 0.0 19.683794 2 GGTGTAG 17565 0.0 19.597475 94 ACATGGG 30525 0.0 18.863722 3 CATGGGG 22600 0.0 17.030396 4 AGGTGTA 21610 0.0 16.943403 94 GCAGAGT 23430 0.0 15.891158 9 AGAGTAC 19445 0.0 15.340541 10-11 TAGGTGT 23440 0.0 14.768068 94 >>END_MODULE