##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139266_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9439132 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83487401172057 33.0 31.0 34.0 30.0 34.0 2 31.945181717980002 33.0 31.0 34.0 30.0 34.0 3 31.99706848044926 34.0 31.0 34.0 30.0 34.0 4 35.49695046112291 37.0 35.0 37.0 33.0 37.0 5 35.53737017344391 37.0 35.0 37.0 33.0 37.0 6 35.62152664037329 37.0 35.0 37.0 33.0 37.0 7 35.55089673499639 37.0 35.0 37.0 33.0 37.0 8 35.52162857771244 37.0 35.0 37.0 33.0 37.0 9 37.117445332897134 39.0 37.0 39.0 33.0 39.0 10-11 37.0960985607575 39.0 37.0 39.0 33.0 39.0 12-13 37.043204661191304 39.0 37.0 39.0 33.0 39.0 14-15 38.413773798268736 40.0 38.0 41.0 33.0 41.0 16-17 38.420966302833776 40.0 38.0 41.0 33.0 41.0 18-19 38.432420216180894 40.0 38.0 41.0 33.0 41.0 20-21 38.48510377703276 40.0 38.0 41.0 33.0 41.0 22-23 38.46707136133617 40.0 38.0 41.0 33.0 41.0 24-25 38.47338261960178 40.0 38.0 41.0 33.0 41.0 26-27 38.45009283961559 40.0 38.0 41.0 33.0 41.0 28-29 38.423171599317705 40.0 38.0 41.0 33.0 41.0 30-31 38.373014499817046 40.0 38.0 41.0 33.0 41.0 32-33 38.3296060978926 40.0 38.0 41.0 33.0 41.0 34-35 38.27284812338034 40.0 38.0 41.0 33.0 41.0 36-37 38.214821832361594 40.0 38.0 41.0 33.0 41.0 38-39 38.13558999914328 40.0 38.0 41.0 33.0 41.0 40-41 38.06779784094292 40.0 38.0 41.0 33.0 41.0 42-43 37.9850257079286 40.0 37.5 41.0 32.0 41.0 44-45 37.86550647968376 40.0 37.0 41.0 32.0 41.0 46-47 37.76339643376879 40.0 37.0 41.0 32.0 41.0 48-49 37.66126718637297 40.0 37.0 41.0 32.0 41.0 50-51 37.52802728159087 40.0 36.5 41.0 31.0 41.0 52-53 37.40573323310387 40.0 36.0 41.0 31.0 41.0 54-55 37.2667282358083 39.0 36.0 41.0 31.0 41.0 56-57 37.09073833945834 39.0 35.5 41.0 31.0 41.0 58-59 37.24256158171613 39.0 35.5 41.0 31.0 41.0 60-61 37.30965184278793 39.0 35.5 41.0 31.0 41.0 62-63 37.155135633389335 39.0 35.0 41.0 31.0 41.0 64-65 36.95085086077271 39.0 35.0 40.5 31.0 41.0 66-67 36.68526542956144 38.0 35.0 40.0 31.0 41.0 68-69 36.40694314789957 37.5 35.0 40.0 31.0 41.0 70-71 36.16723839384689 37.0 35.0 40.0 31.0 41.0 72-73 35.925748090369055 36.5 34.5 39.0 31.0 41.0 74-75 35.649410371987344 36.0 34.0 39.0 30.5 41.0 76-77 35.3949048291511 36.0 34.0 39.0 30.0 40.5 78-79 35.06481634465966 35.0 34.0 37.5 30.0 39.5 80-81 34.76665291407966 35.0 34.0 37.0 30.0 39.0 82-83 34.48408899265492 35.0 34.0 36.5 30.0 39.0 84-85 34.25409079414074 35.0 34.0 36.0 30.0 37.5 86-87 34.02759792764088 35.0 34.0 36.0 30.0 37.0 88-89 33.86603137723806 35.0 34.0 35.5 30.0 37.0 90-91 33.73820982648641 35.0 34.0 35.0 30.0 36.0 92-93 33.641414524454504 35.0 34.0 35.0 30.0 36.0 94-95 33.60310631050338 35.0 34.0 35.0 30.0 36.0 96-97 33.6057069319893 35.0 34.0 35.0 30.0 36.0 98-99 33.649147016303054 35.0 34.0 35.0 30.0 36.0 100 33.30446019624324 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 1.0 16 39.0 17 357.0 18 1208.0 19 3797.0 20 9516.0 21 19487.0 22 32642.0 23 46239.0 24 61165.0 25 77087.0 26 89650.0 27 98123.0 28 112673.0 29 138824.0 30 164280.0 31 192367.0 32 242136.0 33 316987.0 34 429817.0 35 602348.0 36 929935.0 37 1699662.0 38 2566095.0 39 1521429.0 40 83265.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.92581817904443 20.544855183718163 14.399385451967406 24.129941185270003 2 13.979950698856634 21.018182604078426 42.09832005739511 22.903546639669834 3 17.753242565100265 26.1161937347629 30.484307243505015 25.646256456631818 4 12.231188206712227 18.143384370512035 39.58159500259134 30.043832420184398 5 13.302871454118604 38.03242251396316 35.753046894202 12.911659137716228 6 29.736134636108492 37.96178504548936 19.398573936671294 12.903506381730862 7 26.402014507266138 32.656858702685795 23.516516137288896 17.424610652759174 8 24.07831567563628 36.93451897907562 21.640835195439582 17.346330149848523 9 25.160237191301064 17.60226469976265 21.630516450029518 35.606981658906776 10-11 23.63672383914721 27.10055563927916 29.482311792059168 19.78040872951446 12-13 24.335254680718467 24.65026277601546 29.271211386439788 21.74327115682628 14-15 21.721101415066855 26.29285749851946 26.56258044968127 25.423460636732408 16-17 21.674600223781347 29.291795017641732 27.275675832011753 21.75792892656517 18-19 21.697685838253935 28.98365885144222 28.258851124397516 21.059804185906323 20-21 22.605642390539984 28.160741879073036 27.931716149703067 21.301899580683912 22-23 22.33299443026633 28.008641497899234 27.740867064370438 21.917497007464 24-25 22.05640699096822 28.159401403082256 27.813245089273135 21.97094651667639 26-27 21.987111422134863 28.32755050099468 27.733238071686728 21.952100005183727 28-29 21.90007526634055 28.39236073228045 27.762890397618527 21.944673603760467 30-31 22.260143893136256 28.122758009820682 27.717823931420853 21.899274165622213 32-33 22.029649954156895 28.25054857285703 27.67290467520694 22.04689679777913 34-35 22.16052139547878 28.220142167857208 27.73113075762661 21.888205679037398 36-37 22.09623164887896 28.007304023715346 27.842607551904663 22.05385677550103 38-39 21.92066671004872 28.079798866587318 28.000941487458686 21.998592935905275 40-41 22.137630816767402 27.92333803189475 27.98670454709485 21.952326604242998 42-43 21.888978784444042 27.93174667015447 27.970414899029162 22.20885964637232 44-45 21.964888022846885 27.98053868752492 27.9864897592519 22.0680835303763 46-47 21.841700277825215 27.92662530271136 27.947220167210133 22.284454252253287 48-49 21.74798953931745 27.92359201573294 28.124279614794517 22.20413883015509 50-51 21.596994660647244 27.98468644966877 28.132404961481328 22.285913928202657 52-53 21.783197850943324 27.854120786853688 28.052122189025745 22.310559173177246 54-55 21.814582565597977 27.67843949889357 28.102613282133177 22.404364653375275 56-57 21.702963227617744 27.55153602284388 28.155240574260255 22.590260175278125 58-59 21.602004131077987 27.442421704907048 28.310802210684976 22.644771953329982 60-61 21.594978911769456 27.283175095173306 28.576381137050905 22.54546485600633 62-63 21.544758864876044 27.47051495797433 28.502030494887354 22.48269568226228 64-65 21.478305719434957 27.75533548690995 28.150491938299922 22.615866855355176 66-67 21.299270052126882 27.935355233198834 27.96797777139353 22.79739694328075 68-69 21.362933394721786 28.096698826685078 27.934687829665982 22.605679948927147 70-71 21.411199256253116 28.112460438700726 27.661541716750754 22.814798588295403 72-73 21.653598649769286 27.962839880864216 27.35594598699771 23.02761548236879 74-75 21.846240483887787 27.847062854759173 27.427993385277773 22.878703276075267 76-77 21.98214182400247 27.47762906678495 27.579660289665014 22.960568819547568 78-79 22.286914979004337 27.23560587178268 27.520977057454754 22.956502091758225 80-81 22.572361676885983 27.232318185095323 27.183048741287724 23.01227139673097 82-83 22.357189687202027 27.286687292396127 27.312840780767054 23.043282239634795 84-85 22.477822691215586 27.432130286517864 27.294426975367912 22.79562004689863 86-87 22.18814989626726 27.741102055032375 27.4465536493235 22.624194399376865 88-89 21.954247817507706 27.869318528230004 27.43245165085366 22.74398200340863 90-91 21.827102979159648 28.02632816870272 27.695961479421467 22.450607372716167 92-93 21.753418917902508 27.646925775921027 28.191569734703627 22.40808557147284 94-95 21.452532949500295 27.65369454252063 28.5121144278624 22.38165808011668 96-97 21.87184289782783 27.492108822244177 28.498125301861737 22.137922978066257 98-99 23.19966099096065 29.482153012538532 28.801686196175925 18.516499800324894 100 22.30228149944168 30.76664378596246 22.53323427636509 24.397840438230766 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3016.0 1 2208.0 2 1558.5 3 1678.5 4 1642.0 5 1709.0 6 1931.5 7 2234.5 8 2525.5 9 2903.5 10 3346.0 11 3706.0 12 4075.0 13 4592.0 14 5316.5 15 6289.0 16 7462.0 17 9030.5 18 11211.5 19 13823.5 20 17121.5 21 21731.0 22 28291.5 23 36925.0 24 47858.5 25 61821.0 26 79123.5 27 98999.0 28 119340.0 29 141319.0 30 162320.0 31 183194.5 32 205387.0 33 226211.0 34 248189.5 35 268108.5 36 289193.0 37 310682.5 38 326814.0 39 339589.0 40 353216.0 41 366442.0 42 375687.0 43 385288.0 44 392855.5 45 398526.5 46 402711.5 47 402868.0 48 398179.0 49 388048.0 50 378079.0 51 364095.5 52 343773.5 53 321999.5 54 299530.0 55 275111.5 56 249965.5 57 224506.0 58 199145.0 59 174004.5 60 146476.5 61 120239.5 62 96255.5 63 75156.5 64 57640.5 65 43676.5 66 33563.5 67 26561.0 68 21364.0 69 16679.5 70 12927.5 71 10082.0 72 7862.5 73 5960.5 74 4514.5 75 3495.5 76 2643.5 77 1962.0 78 1510.0 79 1188.0 80 913.0 81 684.0 82 526.0 83 368.0 84 262.0 85 208.5 86 173.5 87 142.5 88 95.5 89 61.0 90 41.5 91 33.5 92 24.5 93 14.5 94 12.0 95 11.5 96 10.0 97 6.5 98 4.0 99 5.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.2713033359423303E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 4.7673875097837384E-5 12-13 1.006448474287678E-4 14-15 2.118838893237217E-5 16-17 7.945645849639564E-5 18-19 8.157529738963287E-4 20-21 4.981675648080229E-4 22-23 0.0 24-25 1.3266946241909284E-4 26-27 1.4340213927311368E-4 28-29 0.0 30-31 0.0 32-33 1.0135777812654338E-4 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 7.752793109849105E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.9069433117002534E-4 76-77 1.807995353210876E-5 78-79 4.391995880307864E-4 80-81 3.0889923879813976E-5 82-83 3.1291553226963334E-5 84-85 4.3747349798229615E-4 86-87 8.998153900182321E-5 88-89 2.608276570171084E-5 90-91 1.986251695431343E-5 92-93 6.525701205095187E-4 94-95 4.1087625044194877E-4 96-97 4.2071145673024736E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3102.0 20-21 5982.0 22-23 6449.0 24-25 7326.0 26-27 9436.0 28-29 12736.0 30-31 17066.0 32-33 18838.0 34-35 23048.0 36-37 35157.0 38-39 40690.0 40-41 34980.0 42-43 38007.0 44-45 45984.0 46-47 59354.0 48-49 36962.0 50-51 37748.0 52-53 15063.0 54-55 15386.0 56-57 15498.0 58-59 15575.0 60-61 17014.0 62-63 77199.0 64-65 83111.0 66-67 87889.0 68-69 88625.0 70-71 89121.0 72-73 88990.0 74-75 92140.0 76-77 98276.0 78-79 102881.0 80-81 104271.0 82-83 102921.0 84-85 105904.0 86-87 110180.0 88-89 114837.0 90-91 118261.0 92-93 127402.0 94-95 148521.0 96-97 337255.0 98-99 620535.0 100-101 6229412.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.30048041578011 #Duplication Level Percentage of deduplicated Percentage of total 1 88.27612902486108 73.53443957016319 2 8.017026510216564 13.356443196141695 3 2.095918452014954 5.237730418954316 4 0.7559438368869204 2.5188193912011436 5 0.3430975044308715 1.4290093474273422 6 0.18326751354978998 0.9159763153981801 7 0.10197923562504853 0.5946443524000407 8 0.06674551043388378 0.4447946467791188 9 0.03785815398737778 0.2838242173322836 >10 0.1201387127482526 1.4835968544901852 >50 0.001436504616363613 0.0784342764202118 >100 3.7670061920762386E-4 0.0603007052375957 >500 6.175595104145716E-5 0.034997928561804614 >1k 2.0584058661446883E-5 0.02698877949287667 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.178258339855826E-5 0.0 0.0 0.0 3 0.0 3.178258339855826E-5 0.0 0.0 0.0 4 0.0 6.356516679711652E-5 0.0 2.1188388932372173E-5 0.0 5 0.0 7.41593612633026E-5 0.0 5.297097233093043E-5 0.0 6 1.0594194466186086E-4 7.41593612633026E-5 0.0 5.297097233093043E-5 0.0 7 1.0594194466186086E-4 7.41593612633026E-5 0.0 6.356516679711652E-5 0.0 8 1.0594194466186086E-4 1.0594194466186086E-4 0.0 6.356516679711652E-5 0.0 9 1.0594194466186086E-4 1.9069550039134953E-4 0.0 7.41593612633026E-5 0.0 10-11 1.0594194466186086E-4 1.9069550039134953E-4 0.0 9.005065296258173E-5 0.0 12-13 1.0594194466186086E-4 1.9069550039134953E-4 0.0 9.534775019567477E-5 0.0 14-15 1.0594194466186086E-4 2.6485486165465217E-4 0.0 1.2183323636113998E-4 0.0 16-17 1.483187225266052E-4 2.966374450532104E-4 0.0 1.853984031582565E-4 0.0 18-19 1.483187225266052E-4 3.1252873675248954E-4 0.0 2.118838893237217E-4 0.0 20-21 1.483187225266052E-4 3.3901422291795477E-4 0.0 3.0723163951939646E-4 0.0 22-23 1.5361581975969823E-4 4.025793897150712E-4 0.0 5.667894039409556E-4 0.0 24-25 1.5891291699279128E-4 4.608474592790947E-4 0.0 0.0012395207525437721 0.0 26-27 1.5891291699279128E-4 4.926300426776531E-4 0.0 0.0030564251034946857 1.0594194466186087E-5 28-29 1.5891291699279128E-4 4.979271399107461E-4 0.0 0.014858357738825986 1.0594194466186087E-5 30-31 1.6421001422588433E-4 5.879777928733277E-4 0.0 0.050735597298565166 1.0594194466186087E-5 32-33 1.6950711145897738E-4 5.932748901064208E-4 0.0 0.14606745620254066 1.0594194466186087E-5 34-35 1.8010130592516346E-4 6.409487652042582E-4 0.0 0.2804707042978104 1.0594194466186087E-5 36-37 1.8010130592516346E-4 6.939197375351886E-4 0.0 0.46844349671135016 1.0594194466186087E-5 38-39 1.8010130592516346E-4 7.309994181668399E-4 0.0 0.6795010388667093 1.0594194466186087E-5 40-41 1.8010130592516346E-4 7.839703904977703E-4 0.0 0.8812833637669226 1.0594194466186087E-5 42-43 1.8010130592516346E-4 8.157529738963286E-4 0.0 1.1885467858697176 1.0594194466186087E-5 44-45 1.8539840315825648E-4 9.111007240920033E-4 0.0 1.4607381271922038 1.0594194466186087E-5 46-47 1.9069550039134953E-4 9.85260085355306E-4 0.0 1.7316104913036496 1.0594194466186087E-5 48-49 1.9599259762444259E-4 9.85260085355306E-4 0.0 1.8885264026395647 1.0594194466186087E-5 50-51 2.1718098655681476E-4 0.0011971439746790277 0.0 2.2725341694554118 1.0594194466186087E-5 52-53 2.224780837899078E-4 0.0011971439746790277 0.0 2.754352836680322 1.0594194466186087E-5 54-55 2.224780837899078E-4 0.0012024410719121206 0.0 3.37582947245573 1.0594194466186087E-5 56-57 2.224780837899078E-4 0.0012077381691452138 0.0 4.048338342974756 1.0594194466186087E-5 58-59 2.224780837899078E-4 0.0012236294608444927 0.0 4.736727910998596 1.0594194466186087E-5 60-61 2.5955776442155914E-4 0.0012395207525437721 0.0 5.407488739430702 1.0594194466186087E-5 62-63 2.966374450532104E-4 0.0012501149470099582 0.0 5.897825139006425 1.0594194466186087E-5 64-65 2.966374450532104E-4 0.0013878394750703772 0.0 5.907243377886864 1.0594194466186087E-5 66-67 3.1782583398558257E-4 0.0014037307667696562 0.0 5.910850701102602 1.0594194466186087E-5 68-69 3.1782583398558257E-4 0.0014514046418674937 0.0 5.914092524609254 1.0594194466186087E-5 70-71 3.2842002845176867E-4 0.0014831872252660519 0.0 5.917366130699306 1.0594194466186087E-5 72-73 3.3901422291795477E-4 0.0014937814197322381 0.0 5.919861063496093 1.0594194466186087E-5 74-75 3.3901422291795477E-4 0.001509672711431517 0.0 5.922287134028849 1.0594194466186087E-5 76-77 3.443113201510478E-4 0.0015255640031307965 0.0 5.924723798756072 1.0594194466186087E-5 78-79 3.496084173841408E-4 0.0015361581975969825 0.0 5.92638179019003 1.0594194466186087E-5 80-81 3.496084173841408E-4 0.0015361581975969825 0.0 5.927213434455625 1.0594194466186087E-5 82-83 3.496084173841408E-4 0.0015414552948300755 0.0 5.927668984817672 1.0594194466186087E-5 84-85 3.496084173841408E-4 0.0015467523920631686 0.0 5.927864977415297 1.0594194466186087E-5 86-87 3.496084173841408E-4 0.0015732378782286338 0.0 5.927949730971026 1.0594194466186087E-5 88 3.496084173841408E-4 0.0016738827256574016 0.0 5.9279603251654915 1.0594194466186087E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6695 0.0 34.88401 1 GTATCAA 10840 0.0 31.214258 1 TCAACGC 11110 0.0 28.22435 4 ATCAACG 11155 0.0 28.110487 3 CAACGCA 11505 0.0 27.179718 5 AACGCAG 12135 0.0 25.876177 6 TATCAAC 12945 0.0 24.996176 2 ACGCAGA 14685 0.0 21.264402 7 CGCAGAG 15060 0.0 20.76379 8 GTACATG 25700 0.0 20.578 1 TACATGG 25840 0.0 19.826931 2 ACATGGG 26115 0.0 18.818764 3 CATGGGG 19350 0.0 17.104343 4 GTGTAGA 13395 0.0 16.573889 94 GCAGAGT 19860 0.0 15.570159 9 AGAGTAC 16470 0.0 15.1572695 10-11 GTATAAG 4280 0.0 14.327752 1 GTGTAGC 5555 0.0 14.170894 1 CAGAGTA 18930 0.0 14.037615 10-11 GTACTAG 2345 0.0 13.909807 1 >>END_MODULE