##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139265_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9111195 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.82280721683599 33.0 31.0 34.0 30.0 34.0 2 31.92461263313978 33.0 31.0 34.0 30.0 34.0 3 31.980147170596172 34.0 31.0 34.0 30.0 34.0 4 35.48325768463961 37.0 35.0 37.0 33.0 37.0 5 35.52743454618192 37.0 35.0 37.0 33.0 37.0 6 35.609201098209404 37.0 35.0 37.0 33.0 37.0 7 35.53749744133454 37.0 35.0 37.0 33.0 37.0 8 35.509130580565994 37.0 35.0 37.0 33.0 37.0 9 37.09604832296971 39.0 37.0 39.0 33.0 39.0 10-11 37.075637059683174 39.0 37.0 39.0 33.0 39.0 12-13 37.02066441339473 39.0 37.0 39.0 33.0 39.0 14-15 38.38362207152849 40.0 38.0 41.0 33.0 41.0 16-17 38.38845277705065 40.0 38.0 41.0 33.0 41.0 18-19 38.401135032232325 40.0 38.0 41.0 33.0 41.0 20-21 38.45399484297181 40.0 38.0 41.0 33.0 41.0 22-23 38.433024284143904 40.0 38.0 41.0 33.0 41.0 24-25 38.442231743970616 40.0 38.0 41.0 33.0 41.0 26-27 38.41680334806982 40.0 38.0 41.0 33.0 41.0 28-29 38.38942046545254 40.0 38.0 41.0 33.0 41.0 30-31 38.34046240986494 40.0 38.0 41.0 33.0 41.0 32-33 38.29735254856644 40.0 38.0 41.0 33.0 41.0 34-35 38.242526972587925 40.0 38.0 41.0 33.0 41.0 36-37 38.18609508350957 40.0 38.0 41.0 33.0 41.0 38-39 38.10823642879177 40.0 38.0 41.0 33.0 41.0 40-41 38.04211047824757 40.0 38.0 41.0 32.5 41.0 42-43 37.96064343655011 40.0 37.0 41.0 32.0 41.0 44-45 37.84672694328111 40.0 37.0 41.0 32.0 41.0 46-47 37.74764528684837 40.0 37.0 41.0 32.0 41.0 48-49 37.64689235138445 40.0 37.0 41.0 32.0 41.0 50-51 37.50889646025442 40.0 36.0 41.0 31.0 41.0 52-53 37.38210845246222 40.0 36.0 41.0 31.0 41.0 54-55 37.2381604642407 39.0 36.0 41.0 31.0 41.0 56-57 37.05841942628905 39.0 35.0 41.0 31.0 41.0 58-59 37.201896795857465 39.0 35.5 41.0 31.0 41.0 60-61 37.26409296504731 39.0 35.0 41.0 31.0 41.0 62-63 37.10772250196051 39.0 35.0 41.0 31.0 41.0 64-65 36.9058633040824 38.5 35.0 40.5 31.0 41.0 66-67 36.639288053676324 38.0 35.0 40.0 31.0 41.0 68-69 36.36631586660359 37.5 35.0 40.0 31.0 41.0 70-71 36.13438342645762 37.0 35.0 40.0 31.0 41.0 72-73 35.901713398346196 36.5 34.5 39.0 30.5 41.0 74-75 35.63512145888494 36.0 34.0 39.0 30.0 41.0 76-77 35.38610812368509 36.0 34.0 39.0 30.0 40.5 78-79 35.085616209659975 35.0 34.0 37.5 30.0 39.5 80-81 34.79870859679859 35.0 34.0 37.0 30.0 39.0 82-83 34.534002299172684 35.0 34.0 37.0 30.0 39.0 84-85 34.30936131683002 35.0 34.0 36.0 30.0 37.5 86-87 34.11938056709839 35.0 34.0 36.0 30.0 37.0 88-89 33.97756493473722 35.0 34.0 36.0 30.0 37.0 90-91 33.86609929297839 35.0 34.0 35.0 30.0 36.0 92-93 33.77909084594779 35.0 34.0 35.0 30.0 36.0 94-95 33.75290107935969 35.0 34.0 35.0 30.0 36.0 96-97 33.75417122835306 35.0 34.0 35.0 30.0 36.0 98-99 33.78672529710729 35.0 34.0 35.0 30.0 36.0 100 33.45494896971752 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 0.0 16 21.0 17 274.0 18 1119.0 19 3733.0 20 9453.0 21 19363.0 22 31899.0 23 45309.0 24 59953.0 25 74721.0 26 87366.0 27 96551.0 28 110174.0 29 134897.0 30 160251.0 31 185862.0 32 231650.0 33 299420.0 34 403954.0 35 565359.0 36 860856.0 37 1576048.0 38 2415563.0 39 1644011.0 40 93385.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.863717657233764 20.73507371974807 14.391811392468275 24.00939723054989 2 13.949103273500349 21.042047722609382 42.33226267245954 22.67658633143073 3 17.644557053163716 26.401333743817357 30.583639138444518 25.37047006457441 4 12.162553869168644 18.303230256843367 39.90216431543831 29.632051558549676 5 13.169179018794816 38.1567574704624 35.916642218688835 12.757421292053953 6 29.31252157373429 38.29305596027744 19.594443977985325 12.799978488002948 7 26.10608158424883 32.777445768639566 23.84641092633842 17.27006172077318 8 23.907791218998433 37.07285094279092 21.744089934216078 17.27526790399457 9 25.060181458085356 17.629290120560476 21.83094533702769 35.47958308432648 10-11 23.566079656088945 27.18809161434732 29.607033897756306 19.638794831807427 12-13 24.247869596779168 24.77187382630538 29.35360445939749 21.62665211751796 14-15 21.649182313536514 26.351002953070697 26.685141376640647 25.31467335675214 16-17 21.574225932531967 29.395856018352816 27.369836143230042 21.66008190588517 18-19 21.578185920667263 29.096603140354027 28.353702154617554 20.971508784361152 20-21 22.511285057220977 28.264722019215547 28.02068576230612 21.203307161257356 22-23 22.236924564676823 28.152756489597785 27.82292895530844 21.78738999041695 24-25 21.975888043075546 28.274056057960532 27.909325970375498 21.84072992858842 26-27 21.92887095294752 28.450446804971524 27.758187013369177 21.862495228711772 28-29 21.79903723452218 28.495662553856256 27.85837973531413 21.846920476307435 30-31 22.149210113848174 28.262300113654547 27.78503154750849 21.803458224988788 32-33 21.959347328168764 28.38968724658534 27.734269957428825 21.91669546781708 34-35 22.07342170906014 28.323931228206977 27.84926429865797 21.753382764074914 36-37 21.9835867827895 28.133700465727955 27.93217565929995 21.95053709218259 38-39 21.83392102843473 28.203074009651445 28.096564438931644 21.86644052298218 40-41 22.007853558322847 28.00887688311316 28.118952654195446 21.86431690436855 42-43 21.822773549593528 28.050377172238335 28.07545785179985 22.051391426368287 44-45 21.87497489806777 28.153331596326765 28.043279068659764 21.9284144369457 46-47 21.75298740819848 28.09441497091141 27.968594305750994 22.184003315139122 48-49 21.700211786370424 28.09507896943513 28.11078680731946 22.093922436874987 50-51 21.635842274711546 28.1961296053359 28.08001730373385 22.088010816218695 52-53 21.7752064072596 28.1296015351549 27.9941730007025 22.101019056883008 54-55 21.823461379778813 28.00911057491817 27.97462598904845 22.19280205625456 56-57 21.847714494902043 28.069517735314903 27.880911081485298 22.201856688297752 58-59 21.810458911749368 28.0954469470222 27.965749054822524 22.128345086405908 60-61 21.899924260568834 28.011893016119053 27.969341695561557 22.118841027750552 62-63 21.88423306810159 28.093538881175604 27.784567160605867 22.237660890116935 64-65 21.956950104777658 28.117243738715043 27.682444242859432 22.24336191364787 66-67 22.00933319485912 28.143810733050746 27.587800586278767 22.25905548581137 68-69 21.968422070579216 28.037783999355963 27.6980889043196 22.29570502574522 70-71 22.028795476907064 27.905725912163838 27.806887778136126 22.258590832792976 72-73 22.098087662981893 27.92044374578318 27.752413760538307 22.22905483069662 74-75 22.062525368244458 28.09100136538977 27.754501594777565 22.091971671588215 76-77 22.098464072106097 28.075139242562635 27.722003520488304 22.104393164842968 78-79 22.126272955378756 28.01937337410042 27.72662412002871 22.127729550492113 80-81 22.067338636091836 28.121774209218643 27.74298094301548 22.06790621167404 82-83 22.127003599859325 28.010601066764313 27.927861000477538 21.934534332898828 84-85 22.191366282366566 28.101469926966477 27.81311800350268 21.894045787164274 86-87 21.92623714180392 28.192371568159214 27.91655384499052 21.964837445046346 88-89 22.086915143310925 28.138487287029484 27.87273047104266 21.90186709861693 90-91 22.06819334463399 28.1689038102502 27.894857981596378 21.86804486351943 92-93 22.023102162664845 28.157323146613912 27.92959398970392 21.88998070101733 94-95 21.844584253174517 28.291368218446213 27.959993057997217 21.904054470382054 96-97 21.952046455109627 28.407983356880745 27.982728514391248 21.657241673618376 98-99 22.932418769991916 30.368100364336602 28.20515501254015 18.49432585313133 100 21.89491135854104 31.368166489400878 21.996817779330637 24.740104372727444 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2213.0 1 1689.0 2 1277.5 3 1387.5 4 1382.5 5 1478.0 6 1718.5 7 2007.5 8 2276.5 9 2596.0 10 2974.5 11 3357.5 12 3817.0 13 4390.5 14 5063.0 15 6004.0 16 7259.5 17 8860.0 18 11001.5 19 13803.5 20 17427.5 21 22647.5 22 29877.5 23 39032.5 24 50951.0 25 66231.5 26 85401.0 27 106755.0 28 128474.0 29 152252.5 30 174721.0 31 196053.5 32 219550.0 33 241527.0 34 262691.0 35 281683.5 36 301793.5 37 321867.0 38 333782.5 39 341457.5 40 351510.5 41 359520.5 42 363501.0 43 370030.0 44 375828.5 45 382183.0 46 385896.5 47 385301.0 48 382162.5 49 371936.5 50 359951.0 51 347617.5 52 331074.0 53 311538.0 54 290623.0 55 266582.0 56 242634.5 57 217910.0 58 193309.5 59 169909.5 60 143016.5 61 116522.0 62 93426.0 63 74073.5 64 56746.0 65 42510.5 66 32475.0 67 25239.0 68 19823.5 69 15071.0 70 11698.5 71 9263.0 72 7178.5 73 5387.0 74 3980.0 75 3005.0 76 2286.0 77 1775.5 78 1366.0 79 1036.0 80 810.0 81 639.0 82 493.5 83 344.5 84 245.5 85 183.0 86 141.5 87 112.0 88 68.0 89 40.5 90 36.5 91 30.5 92 22.0 93 16.0 94 10.0 95 6.0 96 6.5 97 6.0 98 4.0 99 9.5 100 30.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.3170610441330693E-4 6 0.0 7 0.0 8 2.195101740221782E-5 9 0.0 10-11 2.195101740221782E-5 12-13 9.87795783099802E-5 14-15 1.097550870110891E-5 16-17 6.585305220665346E-5 18-19 9.713325200481387E-4 20-21 4.556991770512091E-4 22-23 0.0 24-25 8.246705358742129E-5 26-27 1.3205796882628584E-4 28-29 0.0 30-31 0.0 32-33 6.631536470632186E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 3.4625922881837074E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.415376352753991E-4 76-77 1.9524999712006254E-5 78-79 3.8886324661660965E-4 80-81 4.0064142692450617E-5 82-83 2.0297665261053347E-5 84-85 3.7711742003413665E-4 86-87 9.034992595823568E-5 88-89 3.523783743136462E-5 90-91 2.1450604263522103E-5 92-93 7.113309946512264E-4 94-95 4.7204215985545476E-4 96-97 4.8219727654978206E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2887.0 20-21 5817.0 22-23 6191.0 24-25 7280.0 26-27 9062.0 28-29 11853.0 30-31 16263.0 32-33 18366.0 34-35 22737.0 36-37 34792.0 38-39 41102.0 40-41 38085.0 42-43 44715.0 44-45 54689.0 46-47 60396.0 48-49 57646.0 50-51 57290.0 52-53 57651.0 54-55 63877.0 56-57 72072.0 58-59 73880.0 60-61 74057.0 62-63 73954.0 64-65 78576.0 66-67 82736.0 68-69 83441.0 70-71 83922.0 72-73 84899.0 74-75 87286.0 76-77 94795.0 78-79 98208.0 80-81 98752.0 82-83 97455.0 84-85 97400.0 86-87 99110.0 88-89 101146.0 90-91 104255.0 92-93 106881.0 94-95 123216.0 96-97 301101.0 98-99 544664.0 100-101 5838690.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.32343424801593 #Duplication Level Percentage of deduplicated Percentage of total 1 88.97722083591083 75.02864830728119 2 7.605690573339004 12.826758979434121 3 1.9254252552294695 4.870754097264343 4 0.7102564931741556 2.395650668055891 5 0.3218597457429139 1.3570159553617864 6 0.16287312639158166 0.8240412818429595 7 0.09169583650664412 0.5412475488339377 8 0.0566684399820153 0.38227819782088834 9 0.04056319885903331 0.3078385408691001 >10 0.1060266639736659 1.3195274396298977 >50 0.0013656246354780384 0.07295804634765057 >100 3.127929610132485E-4 0.04997131871016077 >500 4.141329416554303E-5 0.023309618548138376 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.097550870110891E-5 0.0 0.0 0.0 3 0.0 1.097550870110891E-5 0.0 1.097550870110891E-5 0.0 4 0.0 4.390203480443564E-5 0.0 2.195101740221782E-5 0.0 5 0.0 5.4877543505544556E-5 0.0 3.292652610332673E-5 0.0 6 3.292652610332673E-5 5.4877543505544556E-5 0.0 3.292652610332673E-5 0.0 7 3.292652610332673E-5 8.780406960887128E-5 0.0 5.4877543505544556E-5 0.0 8 4.390203480443564E-5 9.87795783099802E-5 0.0 6.585305220665346E-5 0.0 9 4.390203480443564E-5 1.8658364791885148E-4 0.0 8.780406960887128E-5 2.195101740221782E-5 10-11 4.93897891549901E-5 1.8658364791885148E-4 0.0 9.329182395942574E-5 2.195101740221782E-5 12-13 5.4877543505544556E-5 1.8658364791885148E-4 0.0 1.0426733266053465E-4 2.195101740221782E-5 14-15 5.4877543505544556E-5 2.2499792837273267E-4 0.0 1.481693674649703E-4 6.0365297856099007E-5 16-17 6.585305220665346E-5 2.304856827232871E-4 0.0 1.701203848671881E-4 9.87795783099802E-5 18-19 8.231631525831682E-5 2.6341220882661386E-4 0.0 2.6341220882661386E-4 1.3170610441330693E-4 20-21 1.1524284136164357E-4 3.182897523321584E-4 0.0 4.390203480443564E-4 1.3170610441330693E-4 22-23 1.5365712181552476E-4 3.896305588893663E-4 0.0 7.682856090776237E-4 1.591448761660792E-4 24-25 1.9755915661996037E-4 4.4450810239491084E-4 0.0 0.001432303885494713 2.2499792837273267E-4 26-27 2.304856827232871E-4 4.609713654465742E-4 0.0 0.0030237526471555047 2.688999631771683E-4 28-29 2.4146119142439603E-4 4.609713654465742E-4 0.0 0.012665737041079683 2.853632262288317E-4 30-31 2.5243670012550497E-4 5.487754350554455E-4 0.0 0.04597091819459467 2.853632262288317E-4 32-33 2.688999631771683E-4 5.597509437565544E-4 0.0 0.13508656109324846 3.182897523321584E-4 34-35 2.9633873492994063E-4 6.420672590148713E-4 0.0 0.25538362421175265 3.292652610332673E-4 36-37 3.073142436310495E-4 7.134080655720791E-4 0.0 0.4277539883626681 3.3475301538382174E-4 38-39 3.1280199798160396E-4 7.408468373248515E-4 0.0 0.6111876652843014 3.4024076973437624E-4 40-41 3.6219178713659407E-4 8.012121351809505E-4 0.0 0.7832726662089879 3.512162784354851E-4 42-43 3.7316729583770295E-4 8.121876438820595E-4 0.0 1.0176381912581172 3.567040327860396E-4 44-45 3.786550501882574E-4 8.835284504392673E-4 0.0 1.1908591573333684 3.676795414871485E-4 46-47 4.0060606759047523E-4 9.438937482953663E-4 0.0 1.3490436764881006 3.8414280453881184E-4 48-49 4.0609382194102967E-4 9.438937482953663E-4 0.0 1.460642648960976 3.8414280453881184E-4 50-51 4.1158157629158417E-4 0.0010755998527086732 0.0 1.5944395877818442 3.896305588893663E-4 52-53 4.2255708499269306E-4 0.001086575361409782 0.0 1.7247353393270588 4.2255708499269306E-4 54-55 4.280448393432475E-4 0.001097550870110891 0.0 1.8420799906049645 4.554836110960198E-4 56-57 4.280448393432475E-4 0.0011414529049153267 0.0 1.9370455796413095 4.664591197971287E-4 58-59 4.3353259369380195E-4 0.0011414529049153267 0.0 1.982330528542085 4.7194687414768316E-4 60-61 4.609713654465743E-4 0.00115791616796699 0.0 2.000374264846708 4.8292238284879205E-4 62-63 4.993856459004555E-4 0.0011798671853692079 0.0 2.011799769404562 5.048734002510099E-4 64-65 5.158489089521188E-4 0.0013280365528341783 0.0 2.015953999447932 5.048734002510099E-4 66-67 5.323121720037822E-4 0.0013280365528341783 0.0 2.019746037704165 5.103611546015644E-4 68-69 5.377999263543366E-4 0.0013884018506902772 0.0 2.0235600269778002 5.158489089521188E-4 70-71 5.43287680704891E-4 0.0014158406224430494 0.0 2.0269569469207935 5.487754350554455E-4 72-73 5.542631894059999E-4 0.0014377916398452674 0.0 2.0299642363048975 5.817019611587723E-4 74-75 5.652386981071089E-4 0.0014652304115980396 0.0 2.0328672583563407 5.817019611587723E-4 76-77 5.707264524576634E-4 0.001520107955103584 0.0 2.0355672334968133 5.871897155093267E-4 78-79 5.707264524576634E-4 0.0015475467268563565 0.0 2.0375318495543118 5.926774698598811E-4 80-81 5.707264524576634E-4 0.0015475467268563565 0.0 2.038486718811309 6.036529785609901E-4 82-83 5.707264524576634E-4 0.0015475467268563565 0.0 2.03909585954422 6.256039959632079E-4 84-85 5.707264524576634E-4 0.0015585222355574654 0.0 2.039414149296552 6.256039959632079E-4 86-87 5.707264524576634E-4 0.0015694977442585743 0.0 2.0394415880683052 6.256039959632079E-4 88 5.707264524576634E-4 0.0016573018138674456 0.0 2.0394470758226557 6.365795046643168E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6760 0.0 31.899534 1 GTATCAA 10555 0.0 30.584631 1 ATCAACG 10750 0.0 28.162905 3 TCAACGC 10805 0.0 27.86147 4 CAACGCA 11100 0.0 27.121006 5 AACGCAG 11915 0.0 25.516766 6 TATCAAC 12700 0.0 24.544762 2 ACGCAGA 14310 0.0 21.12678 7 CGCAGAG 14565 0.0 20.698263 8 GTACATG 25225 0.0 20.313732 1 TACATGG 24710 0.0 19.700253 2 ACATGGG 24850 0.0 18.936289 3 CATGGGG 18565 0.0 16.606646 4 GTACTAG 2660 0.0 16.37413 1 GCAGAGT 19155 0.0 15.671582 9 AGAGTAC 15745 0.0 15.078974 10-11 GTATTAT 4770 0.0 13.965158 1 CAGAGTA 18620 0.0 13.736839 10-11 CGACGAG 940 0.0 13.695786 24-25 GTATATA 8805 0.0 13.433528 1 >>END_MODULE