##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139264_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8232642 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.806622952874665 33.0 31.0 34.0 30.0 34.0 2 31.897259105886057 33.0 31.0 34.0 30.0 34.0 3 31.95180672255638 34.0 31.0 34.0 30.0 34.0 4 35.45526709408717 37.0 35.0 37.0 33.0 37.0 5 35.5027654548807 37.0 35.0 37.0 33.0 37.0 6 35.57706857652744 37.0 35.0 37.0 33.0 37.0 7 35.503805582703585 37.0 35.0 37.0 33.0 37.0 8 35.47243582315373 37.0 35.0 37.0 33.0 37.0 9 37.0499045142495 39.0 37.0 39.0 33.0 39.0 10-11 37.0284542313391 39.0 37.0 39.0 33.0 39.0 12-13 36.972792816692376 39.0 37.0 39.0 33.0 39.0 14-15 38.32946561990671 40.0 38.0 41.0 33.0 41.0 16-17 38.33923538761918 40.0 38.0 41.0 33.0 41.0 18-19 38.353760433163494 40.0 38.0 41.0 33.0 41.0 20-21 38.40677389487864 40.0 38.0 41.0 33.0 41.0 22-23 38.39056705291209 40.0 38.0 41.0 33.0 41.0 24-25 38.40044685663978 40.0 38.0 41.0 33.0 41.0 26-27 38.375244131970135 40.0 38.0 41.0 33.0 41.0 28-29 38.34374645005026 40.0 38.0 41.0 33.0 41.0 30-31 38.292947414508745 40.0 38.0 41.0 33.0 41.0 32-33 38.249553640016416 40.0 38.0 41.0 33.0 41.0 34-35 38.19351512744851 40.0 38.0 41.0 33.0 41.0 36-37 38.14149811425725 40.0 38.0 41.0 33.0 41.0 38-39 38.066604990625805 40.0 38.0 41.0 33.0 41.0 40-41 38.00148887890519 40.0 37.5 41.0 32.0 41.0 42-43 37.92230773139069 40.0 37.0 41.0 32.0 41.0 44-45 37.82077909809981 40.0 37.0 41.0 32.0 41.0 46-47 37.72819578267696 40.0 37.0 41.0 32.0 41.0 48-49 37.631633620961054 40.0 37.0 41.0 31.5 41.0 50-51 37.50267380503045 40.0 36.0 41.0 31.0 41.0 52-53 37.385305797634146 40.0 36.0 41.0 31.0 41.0 54-55 37.25090454042015 39.0 36.0 41.0 31.0 41.0 56-57 37.07895596036809 39.0 35.5 41.0 31.0 41.0 58-59 37.23418640934203 39.0 35.5 41.0 31.0 41.0 60-61 37.299287682617404 39.0 35.5 41.0 31.0 41.0 62-63 37.146645190937036 39.0 35.0 41.0 31.0 41.0 64-65 36.94172830718335 39.0 35.0 41.0 31.0 41.0 66-67 36.669417653458886 38.0 35.0 40.0 31.0 41.0 68-69 36.384371590506234 37.5 35.0 40.0 31.0 41.0 70-71 36.13661604206875 37.0 35.0 40.0 30.5 41.0 72-73 35.88129515936707 36.5 34.5 39.0 30.0 41.0 74-75 35.59276562870375 36.0 34.0 39.0 30.0 41.0 76-77 35.31169459226702 36.0 34.0 39.0 30.0 40.5 78-79 34.969022156795035 35.0 34.0 37.0 30.0 39.5 80-81 34.644304861314126 35.0 34.0 37.0 30.0 39.0 82-83 34.35327122659919 35.0 34.0 36.5 30.0 39.0 84-85 34.11177728245871 35.0 34.0 36.0 30.0 37.5 86-87 33.89301750348534 35.0 34.0 36.0 29.0 37.0 88-89 33.72955308034497 35.0 34.0 35.5 29.0 37.0 90-91 33.588794708894156 35.0 33.5 35.0 29.0 36.0 92-93 33.47951313061653 35.0 33.0 35.0 29.0 36.0 94-95 33.454894051320196 35.0 33.0 35.0 29.0 36.0 96-97 33.46935459901534 35.0 33.0 35.0 29.0 36.0 98-99 33.577970410949405 35.0 34.0 35.0 30.0 36.0 100 33.22190513148984 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 3.0 16 44.0 17 288.0 18 1117.0 19 3491.0 20 8662.0 21 17642.0 22 29367.0 23 42084.0 24 55821.0 25 69976.0 26 80842.0 27 89131.0 28 102852.0 29 126154.0 30 149890.0 31 175200.0 32 221376.0 33 288793.0 34 388754.0 35 543071.0 36 840510.0 37 1517071.0 38 2182571.0 39 1222715.0 40 75217.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.573803646508615 20.96024581173334 14.347508369731127 24.118442172026914 2 13.912350373063715 21.24763836445214 42.17631472375454 22.663696538729607 3 17.474888377266982 26.52078154254734 30.80487406108513 25.199456019100552 4 12.162887685387023 18.25887728386586 39.94965407216784 29.628580958579278 5 13.08352830940863 38.22033142734148 35.98817826712569 12.707961996124206 6 29.28737821953147 38.434624024705556 19.487522960429956 12.790474795333019 7 25.98872877018095 32.89606179887332 23.930385895560626 17.184823535385117 8 23.860702780553652 37.09317581077567 21.87196065029436 17.174160758376324 9 25.13204145157776 17.4872416412617 21.9274322872293 35.453284619931246 10-11 23.487189223285508 27.200755432128144 29.714329755015374 19.597725589570974 12-13 24.107758004973377 24.874444770518103 29.443864368041716 21.5739328564668 14-15 21.600504625429434 26.436540837867216 26.740592721096423 25.222361815606924 16-17 21.495547901734984 29.451591136981055 27.445562690438724 21.60729827084524 18-19 21.524856284176767 29.16252356798597 28.45612777352772 20.85649237430954 20-21 22.423441895464773 28.347541006716533 28.056636737098618 21.172380360720076 22-23 22.181571921998362 28.182058460916032 27.901176783325955 21.735192833759648 24-25 21.91392283559015 28.314703641662536 27.98044188118481 21.790931641562505 26-27 21.83928855462905 28.5021833497386 27.856233599300822 21.802294496331527 28-29 21.784957703641844 28.538927176331374 27.90895781068805 21.767157309338728 30-31 22.100794161978815 28.315504017509863 27.83514141574895 21.748560404762372 32-33 21.936833417396485 28.380118299784492 27.770639032815197 21.91240925000382 34-35 22.02050431314409 28.344434248320628 27.90988341207007 21.72517802646522 36-37 21.930524306516748 28.117208191240188 27.994140559812625 21.958126942430436 38-39 21.7701541802191 28.11624002239454 28.232709107833276 21.880896689553083 40-41 21.972589549198197 27.82999323151536 28.271048759857447 21.926368459428996 42-43 21.681530502999834 27.89473397984718 28.242790742744393 22.18094477440859 44-45 21.675614340426232 27.900611681935295 28.321526002269653 22.10224797536882 46-47 21.566473735077167 27.777573533172596 28.336504566644166 22.319448165106078 48-49 21.414793317105378 27.73775989722942 28.546160346273158 22.301286439392044 50-51 21.261319307353187 27.795906860830183 28.56146078469915 22.38131304711748 52-53 21.301302276761522 27.7269513636774 28.549456378940484 22.422289980620587 54-55 21.196696326650795 27.61483339123788 28.651117792826376 22.537352489284952 56-57 21.22205415564088 27.67363963431318 28.5067538115194 22.597552398526545 58-59 21.152753908978337 27.67637620938816 28.486927140204028 22.683942741429476 60-61 21.175691460724106 27.493187375156236 28.536249034742255 22.794872129377403 62-63 21.17648803652812 27.446024879838653 28.43809008014611 22.93939700348712 64-65 21.34560447352959 27.52422402090889 28.279493030370567 22.850678475190954 66-67 21.210311749679246 27.691209070942207 27.943860497423085 23.154618681955462 68-69 21.222029918569906 27.790527994725384 27.831936303859163 23.155505782845545 70-71 21.39233210884746 27.74516685474001 27.64840235007725 23.214098686335277 72-73 21.57821936522835 27.69969872472152 27.2201996165011 23.50188229354903 74-75 21.63932560685519 27.6565447946447 27.030768317383668 23.67336128111644 76-77 21.930930424366675 27.400746326959226 27.162491014907886 23.505832233766213 78-79 22.089738924692462 27.137530332816333 27.327470500704987 23.44526024178622 80-81 22.18433239672406 27.065909299004986 27.33238374291391 23.41737456135705 82-83 22.199718304284474 27.18644660342141 27.216990988596457 23.39684410369766 84-85 22.322661395265673 26.977749074518808 27.33782934613479 23.36176018408073 86-87 21.966749044897444 27.22881461007105 27.615610456953814 23.188825888077687 88-89 22.12209213458023 27.397405529587093 27.3768480163255 23.103654319507175 90-91 22.05149640981095 27.635910646122703 27.680809635056747 22.631783309009602 92-93 21.77847294120102 27.579892821613406 27.97513767058848 22.66649656659709 94-95 21.61009862605657 27.634770892656483 28.254696700933877 22.500433780353067 96-97 21.76319849104205 27.504040212685908 28.53830889695371 22.194452399318333 98-99 23.05642723177142 29.603785647735325 28.648809535300295 18.690977585192954 100 22.56648629101275 30.698181163368428 22.383657888105468 24.351674657513353 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2437.0 1 1805.5 2 1350.5 3 1518.0 4 1496.5 5 1603.5 6 1855.0 7 2149.5 8 2468.5 9 2853.5 10 3271.0 11 3576.0 12 3901.5 13 4418.5 14 5073.0 15 5917.0 16 7017.0 17 8223.0 18 9640.0 19 11515.5 20 14309.5 21 18392.5 22 23736.5 23 30552.5 24 39666.0 25 51931.5 26 67706.5 27 84901.0 28 102215.0 29 121658.0 30 140048.0 31 157126.5 32 176506.5 33 194508.0 34 211231.5 35 227311.0 36 245642.0 37 265546.0 38 279805.0 39 289643.5 40 302423.0 41 314524.0 42 322230.5 43 330040.5 44 336267.5 45 343895.0 46 347565.5 47 346582.5 48 344071.5 49 336201.5 50 326375.5 51 314764.5 52 298930.5 53 279114.5 54 257993.5 55 235750.0 56 213070.5 57 189458.5 58 165918.5 59 143754.0 60 119462.5 61 96414.5 62 76942.0 63 59709.5 64 44952.5 65 33535.0 66 25841.0 67 20409.0 68 16121.5 69 12478.0 70 9762.5 71 7642.5 72 5897.0 73 4557.0 74 3504.0 75 2623.5 76 1927.0 77 1467.0 78 1162.5 79 905.0 80 683.5 81 513.5 82 397.0 83 287.5 84 209.5 85 161.0 86 134.0 87 105.5 88 72.5 89 49.0 90 34.0 91 28.5 92 25.0 93 15.5 94 8.0 95 6.5 96 6.5 97 6.5 98 4.5 99 3.0 100 16.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 9.717415138420936E-5 6 0.0 7 0.0 8 1.214676892302617E-5 9 0.0 10-11 3.64403067690785E-5 12-13 1.2146768923026167E-4 14-15 1.214676892302617E-5 16-17 8.502738246118318E-5 18-19 9.231544381499888E-4 20-21 3.7673100300497663E-4 22-23 0.0 24-25 1.0343564538366715E-4 26-27 1.4005961302503248E-4 28-29 0.0 30-31 0.0 32-33 6.725047825788982E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 6.842462806393821E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 2.2038332005468178E-4 76-77 2.70329888970108E-5 78-79 4.313069119739562E-4 80-81 2.7767147202602223E-5 82-83 7.747013526285616E-5 84-85 4.8595521536784773E-4 86-87 1.959999886755562E-4 88-89 1.4768326311486451E-5 90-91 1.5044055010693314E-5 92-93 5.98364072625442E-4 94-95 2.9780676290945297E-4 96-97 3.622954459784481E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2738.0 20-21 5119.0 22-23 5583.0 24-25 6541.0 26-27 8184.0 28-29 10552.0 30-31 12557.0 32-33 12935.0 34-35 14695.0 36-37 19573.0 38-39 21320.0 40-41 18987.0 42-43 12805.0 44-45 12809.0 46-47 13514.0 48-49 13461.0 50-51 13244.0 52-53 13049.0 54-55 13166.0 56-57 13081.0 58-59 13140.0 60-61 14834.0 62-63 44579.0 64-65 78212.0 66-67 82163.0 68-69 82689.0 70-71 81767.0 72-73 83231.0 74-75 86896.0 76-77 93060.0 78-79 99539.0 80-81 103279.0 82-83 102766.0 84-85 106877.0 86-87 114489.0 88-89 121916.0 90-91 128232.0 92-93 135101.0 94-95 151852.0 96-97 308488.0 98-99 546722.0 100-101 5408897.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.32246776839325 #Duplication Level Percentage of deduplicated Percentage of total 1 87.33607319864198 71.89721070913238 2 8.67446730157563 14.282071096838816 3 2.273615865606311 5.615090064422492 4 0.826176598909773 2.720515857390022 5 0.3690263009977648 1.5189577884788938 6 0.18695830511215528 0.92345214279773 7 0.10705072753553421 0.6168876046988945 8 0.060540230252835905 0.39870569229441516 9 0.03942093414631951 0.29207057225943067 >10 0.12441168926760472 1.5313843214841707 >50 0.0017948782346400155 0.09675560994199082 >100 4.1539457521434054E-4 0.06355126925189833 >500 2.4287572254121378E-5 0.017854757054677494 >1k 2.4287571951497417E-5 0.025492513954158393 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2146768923026168E-5 1.2146768923026168E-5 2 0.0 4.858707569210467E-5 0.0 2.4293537846052335E-5 1.2146768923026168E-5 3 0.0 4.858707569210467E-5 0.0 2.4293537846052335E-5 1.2146768923026168E-5 4 0.0 1.3361445815328785E-4 0.0 6.073384461513084E-5 3.6440306769078507E-5 5 0.0 1.3361445815328785E-4 0.0 6.073384461513084E-5 3.6440306769078507E-5 6 0.0 1.3361445815328785E-4 0.0 7.288061353815701E-5 6.073384461513084E-5 7 0.0 1.3361445815328785E-4 0.0 9.717415138420934E-5 7.288061353815701E-5 8 0.0 1.4576122707631403E-4 0.0 9.717415138420934E-5 7.288061353815701E-5 9 0.0 3.5225629876775886E-4 0.0 1.4576122707631403E-4 1.2146768923026168E-4 10-11 0.0 3.5225629876775886E-4 0.0 1.5790799599934018E-4 1.2754107369177477E-4 12-13 0.0 3.5225629876775886E-4 0.0 2.0042168722993176E-4 1.3361445815328785E-4 14-15 0.0 4.31210296767429E-4 0.0 2.307886095374972E-4 1.7612814938387943E-4 16-17 0.0 4.372836812289421E-4 0.0 2.9152245415262805E-4 2.2471522507598412E-4 18-19 0.0 5.283844481516383E-4 0.0 3.7047645215229814E-4 2.5508214738354955E-4 20-21 0.0 5.951916772282823E-4 0.0 4.615772190749944E-4 2.611555318450626E-4 22-23 0.0 6.437787529203869E-4 0.0 8.259802867657794E-4 2.7330230076808877E-4 24-25 0.0 7.16659366458544E-4 0.0 0.0018159419539924121 3.036692230756542E-4 26-27 0.0 7.591730576891355E-4 0.0 0.004646139113057509 3.097426075371673E-4 28-29 0.0 7.652464421506486E-4 0.0 0.019859967189147787 3.1581599199868035E-4 30-31 0.0 8.502738246118317E-4 0.0 0.0735729793667695 3.1581599199868035E-4 32-33 0.0 8.502738246118317E-4 0.0 0.21075858758342705 3.5225629876775886E-4 34-35 0.0 9.778148983036064E-4 0.0 0.4090120765605986 3.6440306769078507E-4 36-37 0.0 0.0011053559719953812 0.0 0.7020953905198355 3.6440306769078507E-4 38-39 0.0 0.0011053559719953812 0.0 1.0895590990109858 3.765498366138112E-4 40-41 0.0 0.0011903833544565645 0.0 1.4865094340310194 3.765498366138112E-4 42-43 0.0 0.0012389704301486691 0.0 1.9707646706853037 3.765498366138112E-4 44-45 0.0 0.0013725848883019572 0.0 2.575637322745238 3.826232210753243E-4 46-47 0.0 0.0014454655018401141 0.0 3.252406700060564 3.9476998999835044E-4 48-49 0.0 0.0014454655018401141 0.0 3.9178249218173216 4.372836812289421E-4 50-51 0.0 0.0016094468823009674 0.0 4.56730658274707 4.372836812289421E-4 52-53 0.0 0.0016276670356855066 0.0 5.20748989206624 4.7979737245953366E-4 54-55 0.0 0.0016337404201470197 0.0 5.880074707487584 5.405312170746645E-4 56-57 0.0 0.001651960573531559 0.0 6.612682781542062 5.648247549207169E-4 58-59 0.0 0.0016823274958391243 0.0 7.365187263092455 5.76971523843743E-4 60-61 0.0 0.0017187678026082027 0.0 8.093179564956184 6.073384461513084E-4 62-63 0.0 0.0017369879559927422 0.0 8.788077994889125 6.802190596894654E-4 64-65 0.0 0.001943483027684187 0.0 8.968979824459755 6.802190596894654E-4 66-67 0.0 0.0019617031810687264 0.0 8.972891084052968 6.923658286124916E-4 68-69 0.0 0.002010290256760831 0.0 8.9767051694948 7.045125975355177E-4 70-71 0.0 0.0020406571790683964 0.0 8.980057677717554 7.348795198430832E-4 72-73 0.0 0.0020588773324529356 0.0 8.982960755490158 7.773932110736747E-4 74-75 0.0 0.0021196111770680664 0.0 8.98545691650384 7.773932110736747E-4 76-77 0.0 0.0022107119439907625 0.0 8.987813389674905 7.834665955351878E-4 78-79 0.0 0.002247152250759841 0.0 8.98955645101536 7.895399799967009E-4 80-81 0.0 0.002253225635221354 0.0 8.990339917610896 8.381270556888056E-4 82-83 0.0 0.00226537240414438 0.0 8.991032283439509 9.110076692269626E-4 84-85 0.0 0.00228359255752892 0.0 8.991232705126738 9.110076692269626E-4 86-87 0.0 0.002295739326451946 0.0 8.991269145433508 9.292278226115018E-4 88 0.0 0.0024779408602973382 0.0 8.991269145433508 9.353012070730149E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6160 0.0 36.88309 1 GTATCAA 9865 0.0 29.89117 1 ATCAACG 10000 0.0 27.77375 3 TCAACGC 10245 0.0 27.152464 4 CAACGCA 10215 0.0 27.146164 5 AACGCAG 10895 0.0 25.532536 6 TCGGTGG 3785 0.0 24.756475 94 TATCAAC 11605 0.0 24.689934 2 ACGCAGA 13220 0.0 20.975647 7 GTACATG 22680 0.0 20.945951 1 TACATGG 22615 0.0 20.539783 2 CGCAGAG 13485 0.0 20.498268 8 ACATGGG 22890 0.0 19.429077 3 CATGGGG 17670 0.0 18.006094 4 CTCGGTG 4970 0.0 16.295048 94 GTACTAG 2240 0.0 15.891118 1 TCTCGGT 5170 0.0 15.83902 92-93 GCAGAGT 17485 0.0 15.607862 9 ACCGAAC 830 0.0 15.35456 8 AGAGTAC 14310 0.0 15.247445 10-11 >>END_MODULE