##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139263_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6881182 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.123629632234696 33.0 31.0 34.0 30.0 34.0 2 32.34755569609989 34.0 31.0 34.0 30.0 34.0 3 32.39576049579854 34.0 31.0 34.0 30.0 34.0 4 36.042879987769545 37.0 35.0 37.0 35.0 37.0 5 35.89779168753275 37.0 35.0 37.0 35.0 37.0 6 35.92043082133273 37.0 35.0 37.0 35.0 37.0 7 35.87415112694302 37.0 35.0 37.0 35.0 37.0 8 35.875463110843455 37.0 35.0 37.0 35.0 37.0 9 37.64848364714086 39.0 37.0 39.0 35.0 39.0 10-11 37.52808093144463 39.0 37.0 39.0 35.0 39.0 12-13 37.492761926657366 39.0 37.0 39.0 34.5 39.0 14-15 38.75270890960303 40.0 38.0 41.0 34.5 41.0 16-17 38.73733727722941 40.0 38.0 41.0 34.0 41.0 18-19 38.7211293059826 40.0 38.0 41.0 34.0 41.0 20-21 38.71260139815766 40.0 38.0 41.0 34.0 41.0 22-23 38.635687920232925 40.0 38.0 41.0 34.0 41.0 24-25 38.570588700990925 40.0 38.0 41.0 34.0 41.0 26-27 38.39999238812504 40.0 38.0 41.0 34.0 41.0 28-29 38.265607624590146 40.0 38.0 41.0 34.0 41.0 30-31 38.133981982038954 40.0 38.0 41.0 33.5 41.0 32-33 38.04978730224228 40.0 37.5 41.0 33.0 41.0 34-35 38.10961359439534 40.0 38.0 41.0 33.0 41.0 36-37 38.070080069843456 40.0 37.0 41.0 33.0 41.0 38-39 38.006708660378536 40.0 37.0 41.0 33.0 41.0 40-41 37.93846772353021 40.0 37.0 41.0 33.0 41.0 42-43 37.909915962319275 40.0 37.0 41.0 33.0 41.0 44-45 37.94241816947873 40.0 37.0 41.0 33.0 41.0 46-47 37.931138250888566 40.0 37.0 41.0 33.0 41.0 48-49 37.849801078386534 40.0 37.0 41.0 33.0 41.0 50-51 37.768041100551955 40.0 37.0 41.0 33.0 41.0 52-53 37.542601566612746 40.0 36.5 41.0 32.0 41.0 54-55 37.42524963697744 39.0 36.0 41.0 32.0 41.0 56-57 37.367613416194416 39.0 36.0 41.0 32.0 41.0 58-59 37.21342424136209 39.0 35.5 41.0 31.0 41.0 60-61 37.02871366439578 39.0 35.0 40.5 31.0 41.0 62-63 36.783747471810216 38.5 35.0 40.0 31.0 41.0 64-65 36.502020793991 38.0 35.0 40.0 30.5 41.0 66-67 36.225034369895994 38.0 35.0 40.0 30.0 41.0 68-69 35.95106311012888 37.0 34.0 40.0 30.0 41.0 70-71 35.65776637878696 37.0 34.0 39.0 30.0 41.0 72-73 35.34656222450228 36.0 34.0 39.0 29.0 40.5 74-75 34.993857323426965 36.0 34.0 39.0 29.0 40.0 76-77 33.645880344394776 34.5 32.0 36.5 28.0 39.0 78-79 34.37076040958681 35.0 33.5 37.0 29.0 39.0 80-81 34.30091328810168 35.0 34.0 37.0 29.0 39.0 82-83 34.00722161868867 35.0 33.0 36.0 29.0 38.5 84-85 33.81599373218345 35.0 33.0 36.0 29.0 37.0 86-87 33.573152547995406 35.0 33.0 36.0 29.0 37.0 88-89 33.450455759485635 35.0 33.0 35.0 29.0 36.5 90-91 33.26102450411591 35.0 33.0 35.0 29.0 36.0 92-93 33.14577306401999 35.0 33.0 35.0 29.0 36.0 94-95 33.13752788210162 35.0 33.0 35.0 29.0 36.0 96-97 33.17594621184874 35.0 33.0 35.0 29.0 35.5 98-99 33.280119248311436 35.0 33.0 35.0 29.0 35.0 100 31.965222960025788 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 25.0 21 175.0 22 951.0 23 3407.0 24 9352.0 25 20418.0 26 37852.0 27 60194.0 28 86958.0 29 116759.0 30 148612.0 31 183952.0 32 228914.0 33 287673.0 34 381660.0 35 522156.0 36 796353.0 37 1350251.0 38 1735117.0 39 877973.0 40 32426.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.78374907101716 20.914139460342714 14.700860985801567 23.60125048283856 2 14.256402461088808 21.74415674516384 41.77638376662614 22.22305702712121 3 17.744945563131452 26.936258915982748 31.030105002309195 24.288690518576605 4 12.098560973972203 18.942050944154655 40.14824778649947 28.811140295373672 5 12.699576904084212 38.38699514124173 36.14944351130372 12.76398444337034 6 28.567257776352957 39.23206797901872 19.50502108504033 12.69565315958799 7 25.632718332402778 33.1977849154404 23.895691176312443 17.273805575844385 8 23.886303254295555 37.04405725644228 21.68852676763963 17.381112721622536 9 25.298662351904078 17.118192775601635 21.71823096671473 35.86491390577956 10-11 23.556570658936213 27.131254485057944 29.657259465016327 19.654915390989515 12-13 24.60867188224349 24.724545870171724 29.55689153404168 21.10989071354311 14-15 21.675934454284164 26.180734647041742 27.223709531298546 24.919621367375548 16-17 21.173309585190562 29.293668838824377 27.867072696739815 21.665948879245242 18-19 21.15807787561955 28.568880212079968 29.511218863979394 20.761823048321087 20-21 22.119187040572548 27.723851374142328 29.275511943569693 20.881449641715434 22-23 21.808978466999182 27.642845359056555 29.13563486705122 21.412541306893047 24-25 21.55624810273218 27.782942966239393 29.221173741464472 21.43963518956395 26-27 21.532600048044618 27.97883360379947 29.037837064161092 21.45072928399482 28-29 21.411963024205296 28.13840629423286 29.088604116888405 21.36102656467344 30-31 21.757528110888696 27.91320615384974 28.995073560792207 21.334192174469358 32-33 21.571254593388936 28.081085009700207 28.89616810994945 21.451492286961408 34-35 21.624817545085744 28.112584340880453 28.95045055899374 21.312147555040063 36-37 21.61511483741825 28.01856392309673 28.94163521283778 21.42468602664724 38-39 21.51376613272125 28.143401637965116 28.98437953575334 21.3584526935603 40-41 21.733323107326164 27.97067121575063 28.88923968395681 21.406765992966392 42-43 21.642266425904822 28.054448363125513 28.689471230099787 21.613813980869875 44-45 21.758350653153286 28.2592561171702 28.42717316850803 21.555220061168487 46-47 21.76538121950968 28.161459202904837 28.26137404300174 21.81178553458375 48-49 21.792336472112154 28.201311822017104 28.30462056328332 21.701731142587427 50-51 21.72079240245253 28.398220777852597 28.11865340196717 21.762333417727703 52-53 21.82852941393276 28.311417063558096 28.025783840643886 21.834269681865255 54-55 21.860763312299568 28.227078703110585 28.071840692702004 21.840317291887846 56-57 21.866568780105737 28.26664120680996 28.07490330222098 21.79188671086332 58-59 21.77427768944089 28.281108094494677 28.034018958134094 21.910595257930336 60-61 21.96470546954296 28.24077450305216 28.158687618859428 21.635832408545443 62-63 21.7360003857804 28.22709018848979 28.126549027034574 21.910360398695232 64-65 21.680395737121152 28.20135014876865 28.096838279223967 22.02141583488623 66-67 21.781882280108395 28.247670702040672 28.140932430883066 21.82951458696787 68-69 21.686763280933967 28.419607831279155 28.053364969163802 21.840263918623076 70-71 21.70970919816316 28.21176373714295 27.908699606919008 22.169827457774886 72-73 21.790564826414588 28.25224091034334 27.881143481055158 22.07605078218691 74-75 21.70474001011945 28.381627258683732 28.007422548796185 21.90621018240063 76-77 21.752552779551166 28.152358914527586 27.94432723588935 22.150761070031898 78-79 21.75979346855281 28.14635758750466 27.701717658870955 22.39213128507157 80-81 21.940172590610967 28.33719013596405 27.791264017218737 21.93137325620624 82-83 22.008716192153795 28.096937507294555 27.903912401697532 21.99043389885412 84-85 21.949613902589963 28.128594772801186 27.7753205977591 22.146470726849753 86-87 21.706435617527468 28.410461737116993 27.82666259539261 22.056440049962934 88-89 22.017007210938363 28.33411930859549 27.769978734392048 21.878894746074096 90-91 22.034334130860454 28.329240470450124 27.867637091774355 21.76878830691507 92-93 21.81256513012989 28.145711697500236 27.883123747806216 22.158599424563658 94-95 21.779359543565853 28.4671518365874 27.922558238890126 21.830930380956623 96-97 22.029732894045043 28.38236999987972 28.067561674767244 21.520335431307995 98-99 22.714735081551236 30.545546229316955 28.360170950398857 18.379547738732953 100 21.831016419539566 31.644354271112057 22.03749612012964 24.487133189218735 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1518.0 1 1363.0 2 1795.5 3 2520.5 4 3289.5 5 5065.5 6 6584.0 7 7643.5 8 8363.0 9 8350.5 10 7863.0 11 7364.0 12 8053.5 13 10631.5 14 16331.0 15 24363.5 16 31158.0 17 35296.0 18 36617.0 19 35604.5 20 33330.0 21 31356.0 22 31319.5 23 33861.0 24 40082.0 25 50269.5 26 64221.5 27 80249.5 28 96499.0 29 114347.0 30 131064.0 31 146177.5 32 163191.0 33 180018.0 34 196958.0 35 213230.0 36 229343.0 37 245852.0 38 256113.0 39 261302.5 40 269308.5 41 277086.5 42 282485.0 43 288556.0 44 292457.0 45 295464.0 46 296576.0 47 295264.0 48 291800.0 49 283416.0 50 273230.5 51 260797.0 52 244770.5 53 227473.0 54 208951.0 55 189297.0 56 170803.5 57 152254.5 58 133300.5 59 114830.0 60 94983.5 61 75621.0 62 59137.0 63 45716.5 64 34391.5 65 25550.0 66 19385.5 67 14976.0 68 11612.5 69 8451.0 70 5966.5 71 4229.5 72 2963.0 73 2057.0 74 1406.5 75 942.5 76 639.5 77 447.5 78 299.5 79 175.0 80 109.5 81 75.0 82 59.5 83 42.5 84 30.0 85 23.0 86 15.5 87 12.5 88 11.0 89 8.0 90 6.0 91 6.0 92 6.0 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0011989219294010825 18-19 5.8129548092173696E-5 20-21 0.0 22-23 0.0066856918201287285 24-25 0.008518806355320286 26-27 0.020730670703730286 28-29 0.016493415474956162 30-31 0.0017481477100321171 32-33 0.006278292926313063 34-35 0.03245030954827661 36-37 0.005528960503958868 38-39 0.0027585864145313753 40-41 0.007460457342415336 42-43 0.007485740714043655 44-45 0.00870991942529969 46-47 0.005417236469783358 48-49 0.0011955101882149537 50-51 0.002458632343744189 52-53 0.0010351195680728348 54-55 0.005634785896312669 56-57 0.0010758692645110655 58-59 0.0014847439350417306 60-61 9.540194943373283E-4 62-63 0.001542118688308113 64-65 3.5405298032329974E-4 66-67 0.00608565661449768 68-69 0.0044431315695248885 70-71 0.0018930008035491302 72-73 0.0016470072334498936 74-75 6.241184868143267E-4 76-77 5.869884461399552E-4 78-79 8.85693778107492E-4 80-81 0.001066303084196546 82-83 0.006800985834634664 84-85 7.524419954394674E-4 86-87 7.43384850522962E-5 88-89 4.710177147878461E-4 90-91 2.582844745202366E-4 92-93 0.0023835685153364636 94-95 0.0034716611769784428 96-97 4.0772982354064835E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 113.0 20-21 470.0 22-23 1136.0 24-25 2412.0 26-27 3410.0 28-29 5910.0 30-31 14485.0 32-33 18680.0 34-35 25377.0 36-37 37570.0 38-39 44703.0 40-41 47248.0 42-43 56818.0 44-45 63019.0 46-47 62553.0 48-49 57534.0 50-51 51608.0 52-53 48613.0 54-55 51852.0 56-57 55171.0 58-59 33620.0 60-61 57209.0 62-63 55111.0 64-65 57590.0 66-67 60530.0 68-69 62563.0 70-71 62068.0 72-73 60536.0 74-75 61496.0 76-77 60273.0 78-79 64885.0 80-81 66379.0 82-83 65042.0 84-85 66793.0 86-87 71347.0 88-89 79161.0 90-91 85562.0 92-93 94230.0 94-95 117432.0 96-97 289639.0 98-99 482415.0 100-101 4178619.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.59508679797231 #Duplication Level Percentage of deduplicated Percentage of total 1 90.3015005033996 78.1966627407903 2 6.9747738185180905 12.079622884215977 3 1.627716135405001 4.228566600835684 4 0.5479738943390762 1.8980738777326085 5 0.22668234297368436 0.9814788582686964 6 0.11430806017565959 0.5939109835571451 7 0.06950570653084993 0.4213196882995339 8 0.039996192728192374 0.27707790247089986 9 0.022055657157556217 0.17189203913504103 >10 0.07399274722627425 0.9641259557422291 >50 9.057423686371209E-4 0.05299815621301549 >100 5.646437998055526E-4 0.10658490956913869 >500 0.0 0.0 >1k 2.455537756322559E-5 0.027685403169807412 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.4532387023043424E-5 0.0 2 0.0 5.8129548092173696E-5 0.0 1.4532387023043424E-5 0.0 3 0.0 5.8129548092173696E-5 0.0 1.4532387023043424E-5 0.0 4 0.0 7.266193511521713E-5 0.0 1.4532387023043424E-5 0.0 5 0.0 7.266193511521713E-5 0.0 1.4532387023043424E-5 0.0 6 0.0 7.266193511521713E-5 0.0 2.9064774046086848E-5 1.4532387023043424E-5 7 0.0 7.266193511521713E-5 0.0 2.9064774046086848E-5 2.9064774046086848E-5 8 0.0 7.266193511521713E-5 0.0 2.9064774046086848E-5 2.9064774046086848E-5 9 0.0 1.5985625725347768E-4 0.0 8.719432213826054E-5 4.359716106913027E-5 10-11 0.0 1.5985625725347768E-4 0.0 1.3079148320739082E-4 4.359716106913027E-5 12-13 0.0 1.5985625725347768E-4 0.0 1.671224507649994E-4 5.086335458065198E-5 14-15 0.0 2.397843858802165E-4 0.0 2.0345341832260792E-4 9.446051564978226E-5 16-17 0.0 2.470505793917382E-4 0.0 2.3251819236869478E-4 1.3079148320739082E-4 18-19 0.0 2.761153534378251E-4 0.0 2.3251819236869478E-4 1.3079148320739082E-4 20-21 0.0 2.906477404608685E-4 0.0 2.3251819236869478E-4 1.4532387023043425E-4 22-23 7.266193511521712E-6 3.705758690876073E-4 0.0 2.3251819236869478E-4 1.671224507649994E-4 24-25 1.4532387023043424E-5 4.069068366452159E-4 0.0 3.0518012748391194E-4 1.8892103129956452E-4 26-27 1.4532387023043424E-5 4.3597161069130276E-4 0.0 3.633096755760856E-4 1.8892103129956452E-4 28-29 1.4532387023043424E-5 4.432378042028245E-4 0.0 8.719432213826054E-4 2.0345341832260795E-4 30-31 1.4532387023043424E-5 4.6503638473738957E-4 0.0 0.002201656633991079 2.1071961183412967E-4 32-33 1.4532387023043424E-5 4.6503638473738957E-4 0.0 0.005282522682876285 2.1798580534565138E-4 34-35 1.4532387023043424E-5 5.158997393180416E-4 0.0 0.009097274276425184 2.470505793917382E-4 36-37 1.4532387023043424E-5 5.667630938986936E-4 0.0 0.01541159643793755 2.470505793917382E-4 38-39 1.4532387023043424E-5 6.030940614563022E-4 0.0 0.033954922279340966 2.5431677290325993E-4 40-41 2.9064774046086848E-5 7.120869641291278E-4 0.0 0.05353731379289198 2.6158296641478165E-4 42-43 2.9064774046086848E-5 7.338855446636929E-4 0.0 0.06666732546821172 2.761153534378251E-4 44-45 2.9064774046086848E-5 7.920150927558667E-4 0.0 0.08286367080539361 2.906477404608685E-4 46-47 2.9064774046086848E-5 8.283460603134752E-4 0.0 0.09996829033151572 3.1971251450695537E-4 48-49 2.9064774046086848E-5 8.356122538249969E-4 0.0 0.11620096663625523 3.560434820645639E-4 50-51 4.359716106913027E-5 9.954685110784745E-4 0.0 0.1324845062955754 3.7784206259912904E-4 52-53 4.359716106913027E-5 0.0010027347045899963 0.0 0.17335684479788502 3.8510825611065075E-4 54-55 4.359716106913027E-5 0.0010172670916130397 0.0 0.22219293138882246 3.9237444962217247E-4 56-57 4.359716106913027E-5 0.0010463318656591266 0.0 0.2711380108824327 4.069068366452159E-4 58-59 4.359716106913027E-5 0.0010535980591706482 0.0 0.4720046643149389 4.3597161069130276E-4 60-61 4.359716106913027E-5 0.0010971952202397787 0.0 0.6519882775953317 4.505039977143462E-4 62-63 4.359716106913027E-5 0.0011335261877973872 0.0 0.6609038970339689 4.505039977143462E-4 64-65 4.359716106913027E-5 0.001264317671004778 0.0 0.6676687231931956 4.505039977143462E-4 66-67 4.359716106913027E-5 0.0013079148320739083 0.0 0.6741429016119614 4.5777019122586785E-4 68-69 4.359716106913027E-5 0.0013297134126084732 0.0 0.6806897419658425 4.6503638473738957E-4 70-71 4.359716106913027E-5 0.001336979606119995 0.0 0.6863137757437603 4.6503638473738957E-4 72-73 4.359716106913027E-5 0.0013515119931430384 0.0 0.6907606861728115 5.086335458065199E-4 74-75 4.359716106913027E-5 0.0013951091542121687 0.0 0.6942121280907845 5.086335458065199E-4 76-77 4.359716106913027E-5 0.0014459725087928206 0.0 0.6974673827839462 5.086335458065199E-4 78-79 4.359716106913027E-5 0.0014677710893273859 0.0 0.6995745789022874 5.086335458065199E-4 80-81 4.359716106913027E-5 0.0014750372828389075 0.0 0.7004029249626009 5.158997393180416E-4 82-83 4.359716106913027E-5 0.0014823034763504293 0.0 0.700976954250011 5.594969003871719E-4 84-85 4.359716106913027E-5 0.0014968358633734727 0.0 0.7011513428942876 5.667630938986936E-4 86-87 4.359716106913027E-5 0.0015259006374195596 0.0 0.7012312710229144 5.667630938986936E-4 88 4.359716106913027E-5 0.0015694977984886899 0.0 0.7012312710229144 5.81295480921737E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8245 0.0 47.19645 1 GTATCAA 14780 0.0 36.4592 1 ATCAACG 17305 0.0 30.112806 3 TCAACGC 17580 0.0 29.713936 4 CAACGCA 17645 0.0 29.604479 5 CGAGACC 4620 0.0 28.872587 86-87 TATCAAC 18390 0.0 28.81917 2 AACGCAG 18310 0.0 28.644777 6 AGACCGA 4750 0.0 28.56562 88-89 CCCACGA 4695 0.0 27.89363 82-83 GACCGAG 4720 0.0 27.855425 90-91 ACGAGAC 4690 0.0 27.717026 86-87 GAGACCG 4710 0.0 27.643627 88-89 ACCGAGG 5010 0.0 27.605541 90-91 CACGAGA 4990 0.0 26.909346 84-85 TCCGAGC 4755 0.0 26.878538 76-77 GCCCACG 4915 0.0 26.142347 82-83 TCTCCGA 4945 0.0 25.584322 74-75 ATCTCCG 4825 0.0 25.139353 74-75 ACGCAGA 20890 0.0 25.005795 7 >>END_MODULE