##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139262_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6174646 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13711701043266 33.0 31.0 34.0 30.0 34.0 2 32.36222805323577 34.0 31.0 34.0 30.0 34.0 3 32.409469465941854 34.0 31.0 34.0 30.0 34.0 4 36.05446174566121 37.0 35.0 37.0 35.0 37.0 5 35.91011419925936 37.0 35.0 37.0 35.0 37.0 6 35.93070210016898 37.0 35.0 37.0 35.0 37.0 7 35.884899798304225 37.0 35.0 37.0 35.0 37.0 8 35.88238289288163 37.0 35.0 37.0 35.0 37.0 9 37.658011487622126 39.0 37.0 39.0 35.0 39.0 10-11 37.53830689241133 39.0 37.0 39.0 35.0 39.0 12-13 37.504486249090235 39.0 37.0 39.0 35.0 39.0 14-15 38.768965945578095 40.0 38.0 41.0 34.5 41.0 16-17 38.75542160635605 40.0 38.0 41.0 34.0 41.0 18-19 38.733648536288555 40.0 38.0 41.0 34.0 41.0 20-21 38.72509952529272 40.0 38.0 41.0 34.0 41.0 22-23 38.649362660648585 40.0 38.0 41.0 34.0 41.0 24-25 38.58818860698117 40.0 38.0 41.0 34.0 41.0 26-27 38.41778039553836 40.0 38.0 41.0 34.0 41.0 28-29 38.28503097916479 40.0 38.0 41.0 34.0 41.0 30-31 38.15243560631119 40.0 38.0 41.0 33.5 41.0 32-33 38.06467799609637 40.0 37.5 41.0 33.0 41.0 34-35 38.11951663180944 40.0 38.0 41.0 33.0 41.0 36-37 38.08245885482638 40.0 37.5 41.0 33.0 41.0 38-39 38.01841408888181 40.0 37.0 41.0 33.0 41.0 40-41 37.94950460938489 40.0 37.0 41.0 33.0 41.0 42-43 37.92149316125078 40.0 37.0 41.0 33.0 41.0 44-45 37.95220538324129 40.0 37.0 41.0 33.0 41.0 46-47 37.93863400251763 40.0 37.0 41.0 33.0 41.0 48-49 37.8581857055663 40.0 37.0 41.0 33.0 41.0 50-51 37.77387079281789 40.0 37.0 41.0 33.0 41.0 52-53 37.54459890587742 40.0 36.0 41.0 32.0 41.0 54-55 37.425147981619546 39.0 36.0 41.0 32.0 41.0 56-57 37.35900051563904 39.0 36.0 41.0 32.0 41.0 58-59 37.20609444663074 39.0 35.5 41.0 31.0 41.0 60-61 37.017359871684114 39.0 35.0 40.5 31.0 41.0 62-63 36.769797594423665 38.5 35.0 40.0 31.0 41.0 64-65 36.48320078816245 38.0 35.0 40.0 30.5 41.0 66-67 36.20677783888689 37.5 35.0 40.0 30.0 41.0 68-69 35.931469084235275 37.0 34.0 40.0 30.0 41.0 70-71 35.63246162751031 36.5 34.0 39.0 30.0 41.0 72-73 35.32461643941909 36.0 34.0 39.0 29.5 40.5 74-75 34.96846425903728 36.0 34.0 39.0 29.0 40.0 76-77 33.630178788354954 34.5 32.0 36.5 28.0 39.0 78-79 34.344747232870326 35.0 33.5 37.0 29.0 39.0 80-81 34.28249866259531 35.0 34.0 37.0 29.0 39.0 82-83 33.99554622699053 35.0 33.5 36.0 29.0 38.5 84-85 33.80831986075525 35.0 33.0 36.0 29.0 37.0 86-87 33.57018297877245 35.0 33.0 35.5 29.0 37.0 88-89 33.44726572059338 35.0 33.0 35.0 29.0 36.5 90-91 33.26354709274548 35.0 33.0 35.0 29.0 36.0 92-93 33.15461809301717 35.0 33.0 35.0 29.0 36.0 94-95 33.14669674397932 35.0 33.0 35.0 29.0 36.0 96-97 33.18542159641108 35.0 33.0 35.0 29.0 35.0 98-99 33.29122382221832 35.0 33.0 35.0 29.0 35.0 100 31.994187957591603 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 26.0 21 161.0 22 875.0 23 3083.0 24 8504.0 25 18334.0 26 33817.0 27 53928.0 28 77451.0 29 104903.0 30 132718.0 31 164874.0 32 204251.0 33 257274.0 34 340976.0 35 468127.0 36 715266.0 37 1214731.0 38 1553166.0 39 791784.0 40 30394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.89905720910964 20.725965504743105 14.651204295760436 23.72377299038682 2 14.427288625129279 21.620818424246508 41.597947477474825 22.35394547314939 3 17.818786696435716 26.747832993178882 30.924590656695138 24.50878965369027 4 12.287732770429269 18.80120738905518 39.72494941410407 29.18611042641149 5 12.861935728785099 38.14366038150203 36.09104068476152 12.903363204951345 6 28.929059252951504 38.892642590360644 19.326128169938812 12.852169986749038 7 25.778660023586774 32.984643977970556 23.811211201419482 17.42548479702318 8 23.965292909099567 36.94504915747397 21.656269849316057 17.43338808411041 9 25.317240858828182 17.072055628776127 21.573123382295925 36.03758013009977 10-11 23.705537127148666 26.983757449414913 29.48200593199999 19.82869949143643 12-13 24.762569384544474 24.57676925932272 29.37434793832715 21.28631341780565 14-15 21.839470635239657 25.993724984395865 27.030958535922544 25.135845844441935 16-17 21.388087347424374 29.15050964756847 27.639155237109165 21.82224776789799 18-19 21.395457307852237 28.39510141680267 29.24599278419763 20.963448491147464 20-21 22.2377143527184 27.524200088072465 29.128089075305517 21.109996483903615 22-23 21.97357426595701 27.49614465093146 28.922540791055024 21.60774029205651 24-25 21.78392029816254 27.611951905672594 28.998968601815495 21.605159194349376 26-27 21.747392385632317 27.76936365658877 28.88867546279355 21.594568494985364 28-29 21.608598983231403 27.884026205155553 28.894178404220288 21.613196407392753 30-31 21.964771937548306 27.65971400737879 28.84438033281662 21.531133722256286 32-33 21.80324948075182 27.821272863801184 28.75003762667988 21.625440028767123 34-35 21.83881007896736 27.84688025918865 28.81793987171324 21.49636979013075 36-37 21.85232715136528 27.844545356288396 28.733265916129252 21.569861576217072 38-39 21.67855477015871 27.916328763957317 28.814738539338798 21.59037792654518 40-41 21.917892901728464 27.775318415909116 28.705488258471696 21.601300423890727 42-43 21.8300321659352 27.850953940684388 28.531885800774482 21.787128092605933 44-45 21.92432351683066 28.00822501560042 28.303920581777124 21.763530885791795 46-47 21.956499073782883 27.94927062264004 28.086664814090582 22.00756548948649 48-49 21.95017267375815 27.989282620623996 28.132321903850283 21.928222801767568 50-51 21.93241919762974 28.113819696651017 28.010283745011588 21.94347736070766 52-53 22.03419199496798 28.05420636543305 27.92830103879755 21.98330060080142 54-55 21.982037866001384 27.968441859730316 27.99745080383203 22.05206947043627 56-57 22.010333273130605 28.01683783027002 27.939580128129748 22.033248768469626 58-59 21.90821732801409 28.051528996055623 27.93767804854327 22.102575627387015 60-61 22.16244954513162 28.008765565173782 28.004640550943382 21.82414433875121 62-63 21.908749570268917 28.06774361684586 27.949227829375804 22.074278983509416 64-65 21.89062942082451 27.995280050230658 27.978243534288993 22.135846994655836 66-67 21.921453932599057 28.023175358862513 28.037176721192292 22.01819398734614 68-69 21.872977406885806 28.233733107601957 27.866454544092527 22.02683494141971 70-71 21.89488808320512 28.025572598380627 27.728096399363384 22.351442919050864 72-73 21.94200701871466 28.041165591843875 27.70138434216674 22.315443047274726 74-75 21.907044319421264 28.105021016694053 27.89983296083542 22.08810170304926 76-77 21.999235855011793 27.835857356996424 27.826027051905182 22.3388797360866 78-79 21.94464195860808 27.866687967568883 27.610178076925703 22.57849199689734 80-81 22.156591562169346 28.09973394137592 27.634123850684432 22.1095506457703 82-83 22.205610261333742 27.85165950756602 27.72944823965675 22.21328199144349 84-85 22.10678163966831 27.833065692204368 27.655660394753934 22.40449227337339 86-87 21.925296088900907 28.027947434785013 27.76353185753785 22.283224618776234 88-89 22.24799564739387 27.956340523880463 27.72520038791308 22.070463440812585 90-91 22.269258728699405 27.928908939299994 27.779008359881125 22.022823972119475 92-93 22.043129529235276 27.69039607683556 27.81474898106653 22.45172541286263 94-95 22.07439315533703 27.971040786241876 27.906293674479045 22.04827238394205 96-97 22.31279041890774 27.90262729469483 27.96522400124851 21.81935828514892 98-99 22.973479462168537 30.047920665025572 28.354719648728278 18.623880224077606 100 22.02976339609793 31.081029716285176 22.03070026103734 24.858506626579555 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 978.0 1 892.5 2 1296.0 3 1894.5 4 2551.0 5 4115.0 6 5504.5 7 6535.5 8 7303.5 9 7395.0 10 6987.0 11 6439.5 12 6920.5 13 9037.5 14 13909.5 15 20822.0 16 26660.0 17 30425.0 18 31984.5 19 31350.0 20 29513.5 21 27828.0 22 27691.0 23 29833.0 24 34907.0 25 43121.0 26 54235.5 27 67134.0 28 81429.5 29 97387.5 30 112951.0 31 128120.0 32 143158.5 33 156984.0 34 171412.5 35 185477.5 36 199272.0 37 213005.0 38 223585.5 39 231161.5 40 239217.5 41 246418.0 42 251331.0 43 255882.0 44 260067.5 45 263542.5 46 264309.5 47 263090.5 48 259496.0 49 252256.5 50 245054.0 51 235649.5 52 221972.5 53 207823.0 54 193473.0 55 177190.0 56 160685.5 57 144133.0 58 127120.5 59 110506.0 60 92573.0 61 75580.0 62 60610.0 63 47457.0 64 36504.5 65 27640.5 66 21222.0 67 16588.5 68 12691.5 69 9169.5 70 6596.0 71 4867.5 72 3479.0 73 2454.0 74 1741.5 75 1171.0 76 779.0 77 508.0 78 318.0 79 202.0 80 144.0 81 100.0 82 64.0 83 39.0 84 28.0 85 24.0 86 18.5 87 12.5 88 9.5 89 8.0 90 6.0 91 3.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0013765971360949277 18-19 5.668341148626172E-5 20-21 0.0 22-23 0.00681893295361109 24-25 0.008156874434759787 26-27 0.02095459101232796 28-29 0.016538261389329078 30-31 0.0020697324517734077 32-33 0.006133789500709534 34-35 0.033502294450246196 36-37 0.005547230612715793 38-39 0.0024808909580014008 40-41 0.0070359996757466195 42-43 0.007622351911785318 44-45 0.008353808312384888 46-47 0.00533615568025687 48-49 8.590874137766178E-4 50-51 0.0027471327560137076 52-53 9.519665620435036E-4 54-55 0.00530687651505604 56-57 0.0010383753348760455 58-59 0.0012872428866421734 60-61 8.195921799377705E-4 62-63 0.001608909102362342 64-65 4.3118621253645476E-4 66-67 0.005420485097279639 68-69 0.0040824749836045554 70-71 0.0017793926081191601 72-73 0.0015210427656957982 74-75 7.250750380156843E-4 76-77 6.546979414244683E-4 78-79 8.397780535762591E-4 80-81 0.0011297690752010289 82-83 0.0072866005185023485 84-85 8.092681071434096E-4 86-87 9.337798599454714E-5 88-89 4.945162358097515E-4 90-91 3.2071052347440676E-4 92-93 0.002556174379388054 94-95 0.0033065983391777644 96-97 3.419960944046019E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 111.0 20-21 354.0 22-23 938.0 24-25 2149.0 26-27 2449.0 28-29 5417.0 30-31 13033.0 32-33 17156.0 34-35 23116.0 36-37 33805.0 38-39 39662.0 40-41 42121.0 42-43 49393.0 44-45 55673.0 46-47 55985.0 48-49 51641.0 50-51 45955.0 52-53 43090.0 54-55 46350.0 56-57 50491.0 58-59 31101.0 60-61 51657.0 62-63 50020.0 64-65 52727.0 66-67 56273.0 68-69 56919.0 70-71 56767.0 72-73 54711.0 74-75 55406.0 76-77 54602.0 78-79 59333.0 80-81 60771.0 82-83 59786.0 84-85 60663.0 86-87 65297.0 88-89 72894.0 90-91 78936.0 92-93 87509.0 94-95 104247.0 96-97 258305.0 98-99 431969.0 100-101 3735864.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.34383787839329 #Duplication Level Percentage of deduplicated Percentage of total 1 90.64374607593797 79.17172661946975 2 6.842465270306317 11.952943545163428 3 1.5127798887304356 3.96396004040895 4 0.49627166010575136 1.733850856956714 5 0.2209441185007583 0.9649053633257373 6 0.10326613594400327 0.5411796381732686 7 0.05904746448854687 0.3610202515792476 8 0.038999933696689124 0.27251231088573624 9 0.021757271257958975 0.17103272160882554 >10 0.05955325548916202 0.7607690521268471 >50 8.14910274631418E-4 0.04666325903519869 >100 3.5401526776912746E-4 0.059436341266326465 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6195260424646207E-5 2 0.0 3.2390520849292413E-5 0.0 1.6195260424646207E-5 1.6195260424646207E-5 3 0.0 3.2390520849292413E-5 0.0 1.6195260424646207E-5 1.6195260424646207E-5 4 0.0 1.1336682297252345E-4 0.0 1.6195260424646207E-5 1.6195260424646207E-5 5 0.0 1.1336682297252345E-4 0.0 1.6195260424646207E-5 1.6195260424646207E-5 6 9.717156254787724E-5 1.1336682297252345E-4 0.0 1.6195260424646207E-5 4.858578127393862E-5 7 9.717156254787724E-5 1.1336682297252345E-4 0.0 1.6195260424646207E-5 4.858578127393862E-5 8 9.717156254787724E-5 1.2956208339716965E-4 0.0 1.6195260424646207E-5 4.858578127393862E-5 9 9.717156254787724E-5 2.1053838552040067E-4 0.0 3.2390520849292413E-5 6.478104169858483E-5 10-11 1.2956208339716965E-4 2.1053838552040067E-4 0.0 6.478104169858483E-5 6.478104169858483E-5 12-13 1.2956208339716965E-4 2.1053838552040067E-4 0.0 7.287867191090792E-5 6.478104169858483E-5 14-15 1.2956208339716965E-4 3.0770994806827794E-4 0.0 8.097630212323103E-5 6.478104169858483E-5 16-17 2.267336459450469E-4 3.0770994806827794E-4 0.0 1.0526919276020034E-4 6.478104169858483E-5 18-19 2.267336459450469E-4 3.562957293422166E-4 0.0 1.5385497403413897E-4 6.478104169858483E-5 20-21 2.3483127615737E-4 4.2107677104080135E-4 0.0 2.186360157327238E-4 6.478104169858483E-5 22-23 2.510265365820162E-4 4.4536966167777066E-4 0.0 5.263459638010017E-4 1.1336682297252343E-4 24-25 2.591241667943393E-4 5.020530731640325E-4 0.0 0.0015466473705537127 1.4575734382181585E-4 26-27 2.591241667943393E-4 5.344435940133249E-4 0.0 0.0038949601321274126 1.4575734382181585E-4 28-29 2.753194272189855E-4 5.344435940133249E-4 0.0 0.012640400761436365 1.4575734382181585E-4 30-31 2.753194272189855E-4 7.0449382847211E-4 0.0 0.013887435814134121 1.4575734382181585E-4 32-33 2.753194272189855E-4 7.206890888967561E-4 0.0 0.016948340034392256 1.4575734382181585E-4 34-35 2.753194272189855E-4 8.502511722939259E-4 0.0 0.020713738083122497 1.6195260424646207E-4 36-37 2.753194272189855E-4 9.717156254787723E-4 0.0 0.027629114284446428 1.6195260424646207E-4 38-39 2.753194272189855E-4 9.717156254787723E-4 0.0 0.04667474054383037 1.6195260424646207E-4 40-41 2.753194272189855E-4 0.001012203776540388 0.0 0.0672589165435557 1.6195260424646207E-4 42-43 3.0770994806827794E-4 0.0010364966671773572 0.0 0.08070908032622437 1.7005023445878516E-4 44-45 3.2390520849292413E-4 0.0011174729693005881 0.0 0.09679907155811038 1.7814786467110826E-4 46-47 3.4010046891757033E-4 0.0011660587505745268 0.0 0.11390126656653676 1.8624549488343136E-4 48-49 3.481980991298934E-4 0.0011660587505745268 0.0 0.1295053999856834 2.1053838552040067E-4 50-51 3.7249098976686277E-4 0.0012713279433347272 0.0 0.1449961665818575 2.1053838552040067E-4 52-53 3.7249098976686277E-4 0.0012794255735470504 0.0 0.18532236503922656 2.2673364594504687E-4 54-55 3.7249098976686277E-4 0.0012875232037593736 0.0 0.23246676813537165 2.429289063696931E-4 56-57 3.7249098976686277E-4 0.0013118160943963427 0.0 0.279141508679202 2.510265365820162E-4 58-59 3.7249098976686277E-4 0.0013118160943963427 0.0 0.4773229104955976 2.591241667943393E-4 60-61 3.805886199791859E-4 0.0013361089850333122 0.0 0.6562805381879382 2.753194272189855E-4 62-63 3.8868625019150896E-4 0.0013604018756702813 0.0 0.6651231503797951 2.753194272189855E-4 64-65 4.2917440125312447E-4 0.0016519165633139131 0.0 0.672289553117701 2.753194272189855E-4 66-67 4.534672918900938E-4 0.0016519165633139131 0.0 0.6793182961419975 2.753194272189855E-4 68-69 4.534672918900938E-4 0.0016762094539508822 0.0 0.686274160494383 2.753194272189855E-4 70-71 4.7776018252706305E-4 0.0016924047143755286 0.0 0.6916833774762148 3.15807578280601E-4 72-73 5.344435940133249E-4 0.0017005023445878517 0.0 0.6961451717232049 3.4010046891757033E-4 74-75 5.425412242256479E-4 0.001732892865437144 0.0 0.6994732977404696 3.4010046891757033E-4 76-77 5.587364846502941E-4 0.0018300644279850213 0.0 0.7027366427160359 3.4010046891757033E-4 78-79 5.668341148626172E-4 0.00187865020925896 0.0 0.704769147899329 3.4010046891757033E-4 80-81 5.992246357119096E-4 0.00187865020925896 0.0 0.7053602749048286 3.4010046891757033E-4 82-83 5.992246357119096E-4 0.00187865020925896 0.0 0.7058380350873557 3.4010046891757033E-4 84-85 6.154198961365559E-4 0.00187865020925896 0.0 0.7060809639937253 3.4010046891757033E-4 86-87 6.154198961365559E-4 0.001894845469683606 0.0 0.7062105260771225 3.4010046891757033E-4 88 6.154198961365559E-4 0.0020082122926561295 0.0 0.7062267213375472 3.4010046891757033E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7295 0.0 48.04799 1 GTATCAA 12690 0.0 36.5503 1 TCAACGC 15225 0.0 29.82586 4 ATCAACG 15205 0.0 29.809475 3 CAACGCA 15600 0.0 29.027582 5 TATCAAC 16235 0.0 28.1787 2 AACGCAG 16220 0.0 28.10049 6 AGACCGA 4940 0.0 25.75915 88-89 ACCGAGG 5140 0.0 25.440699 90-91 CGAGACC 4970 0.0 25.317343 86-87 GACCGAG 5035 0.0 25.26132 90-91 GAGACCG 5015 0.0 24.680325 88-89 ACGCAGA 18430 0.0 24.593222 7 ACGAGAC 5030 0.0 24.507133 86-87 CGCAGAG 18705 0.0 24.27686 8 CCCACGA 5160 0.0 23.587278 82-83 GCCCACG 5095 0.0 23.187185 82-83 CACGAGA 5400 0.0 23.05812 84-85 TCTCCGA 5220 0.0 22.351076 74-75 TCCGAGC 5245 0.0 22.17431 76-77 >>END_MODULE