##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139260_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9786312 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.797308015522088 33.0 31.0 33.0 25.0 34.0 2 31.838887008711758 33.0 32.0 33.0 28.0 34.0 3 31.89109993631922 33.0 31.0 33.0 29.0 34.0 4 32.30801409151885 33.0 33.0 33.0 31.0 34.0 5 32.79958466478485 33.0 33.0 34.0 32.0 34.0 6 36.46494368869499 38.0 37.0 38.0 34.0 38.0 7 37.10950110726083 38.0 38.0 38.0 36.0 38.0 8 37.05611552135268 38.0 38.0 38.0 36.0 38.0 9 37.23339670756461 38.0 38.0 38.0 36.0 38.0 10-11 37.31596407308494 38.0 38.0 38.0 37.0 38.0 12-13 37.359558432226564 38.0 38.0 38.0 37.0 38.0 14-15 37.394666857136784 38.0 38.0 38.0 37.0 38.0 16-17 37.33100457046536 38.0 38.0 38.0 37.0 38.0 18-19 37.37836051006753 38.0 38.0 38.0 37.0 38.0 20-21 37.41173737535516 38.0 38.0 38.0 37.0 38.0 22-23 37.426920822039634 38.0 38.0 38.0 37.0 38.0 24-25 37.429431580803225 38.0 38.0 38.0 37.0 38.0 26-27 37.39847732644232 38.0 38.0 38.0 37.0 38.0 28-29 37.375547482041235 38.0 38.0 38.0 37.0 38.0 30-31 37.27647944861721 38.0 38.0 38.0 37.0 38.0 32-33 37.338592277025725 38.0 38.0 38.0 37.0 38.0 34-35 37.35183576462092 38.0 38.0 38.0 37.0 38.0 36-37 37.33662460317541 38.0 38.0 38.0 37.0 38.0 38-39 37.31404200211021 38.0 38.0 38.0 37.0 38.0 40-41 37.2952926307988 38.0 38.0 38.0 37.0 38.0 42-43 37.27410183083947 38.0 38.0 38.0 37.0 38.0 44-45 37.23911348015801 38.0 38.0 38.0 37.0 38.0 46-47 37.20999991729802 38.0 38.0 38.0 37.0 38.0 48-49 37.18058728968048 38.0 38.0 38.0 37.0 38.0 50-51 37.141460491309005 38.0 38.0 38.0 37.0 38.0 52-53 37.121686093975114 38.0 38.0 38.0 36.0 38.0 54-55 37.10507300500173 38.0 38.0 38.0 36.0 38.0 56-57 37.09281884265016 38.0 38.0 38.0 36.0 38.0 58-59 37.08129158906433 38.0 38.0 38.0 36.0 38.0 60-61 37.08019501984681 38.0 38.0 38.0 36.0 38.0 62-63 37.08382005572243 38.0 38.0 38.0 36.0 38.0 64-65 37.08421566738623 38.0 38.0 38.0 36.0 38.0 66-67 37.06387782059116 38.0 38.0 38.0 36.0 38.0 68-69 37.063792696708084 38.0 38.0 38.0 36.0 38.0 70-71 37.04370927527023 38.0 38.0 38.0 36.0 38.0 72-73 37.03196091776631 38.0 38.0 38.0 36.0 38.0 74-75 37.016020550249635 38.0 38.0 38.0 36.0 38.0 76-77 37.0150108800576 38.0 38.0 38.0 36.0 38.0 78-79 36.99518404132276 38.0 38.0 38.0 36.0 38.0 80-81 36.987242815346264 38.0 38.0 38.0 36.0 38.0 82-83 36.93099589779226 38.0 38.0 38.0 36.0 38.0 84-85 36.9149413794211 38.0 38.0 38.0 36.0 38.0 86-87 36.90307846725277 38.0 38.0 38.0 35.0 38.0 88-89 36.90588650310232 38.0 38.0 38.0 35.0 38.0 90-91 36.89413742136696 38.0 38.0 38.0 35.0 38.0 92-93 36.873861267854004 38.0 38.0 38.0 35.0 38.0 94-95 36.84382595309608 38.0 38.0 38.0 35.0 38.0 96-97 36.81129896099212 38.0 38.0 38.0 35.0 38.0 98-99 36.8143190034168 38.0 38.0 38.0 35.0 38.0 100 35.2151868960609 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 12.0 19 24.0 20 62.0 21 221.0 22 823.0 23 2154.0 24 4956.0 25 9830.0 26 16442.0 27 26266.0 28 39812.0 29 57462.0 30 78901.0 31 104076.0 32 135240.0 33 181383.0 34 263323.0 35 455394.0 36 1206203.0 37 7203725.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.29736513612074 19.818436199459 14.132545539116267 24.751653125303996 2 13.576812018371577 21.415020838885738 43.08962846449541 21.918538678247277 3 17.04137370645857 27.776418736700816 30.927861282166358 24.25434627467426 4 11.390878578439413 18.863605823297174 41.39225300982591 28.353262588437506 5 12.481338170438681 38.35971893777428 36.3005667882483 12.858376103538744 6 27.507543188894857 39.61328843797337 20.27128299199944 12.607885381132341 7 24.957879944968035 33.547663307689355 24.72286802219263 16.771588725149986 8 23.6604861974562 36.77628508063099 22.40169739121336 17.16153133069945 9 25.758894239464684 16.786831520625103 21.86128372809356 35.592990511816645 10-11 23.2502325584247 27.16922073474412 30.061150590821274 19.519396116009908 12-13 24.558149411042148 24.915480158178084 29.865245961157072 20.661124469622695 14-15 21.817161561985763 25.90971961654196 27.6412605688435 24.631858252628774 16-17 21.10324604406645 29.051832804840068 28.132196275777844 21.712724875315644 18-19 21.165506474757805 28.29849998651177 29.85187371912933 20.68411981960109 20-21 22.249924600176566 27.44896914914614 29.502199712890555 20.798906537786742 22-23 21.874405372013577 27.421769694640965 29.394299542283353 21.30952539106211 24-25 21.487063921550593 27.58005140705084 29.56339777099845 21.369486900400116 26-27 21.505023772880136 27.736040411979783 29.37957471752217 21.379361097617906 28-29 21.40853151905932 27.723242441219337 29.46556324436747 21.402662795353873 30-31 21.751222177097574 27.536447875555016 29.353927568695116 21.358402378652293 32-33 21.4990692934901 27.76073130790526 29.345028168181226 21.39517123042342 34-35 21.59147675165683 27.77438697061968 29.41596779726452 21.218168480458964 36-37 21.60204402531107 27.6601266707001 29.3504682885799 21.387361015408928 38-39 21.45516833392957 27.78470412065236 29.427160489995003 21.332967055423072 40-41 21.67578324029495 27.62477082855961 29.326812713907437 21.37263321723801 42-43 21.59006917880508 27.681537032042613 29.223072948053424 21.50532084109888 44-45 21.638731026544853 27.813637948820553 29.083017662731237 21.46461336190336 46-47 21.69114378638177 27.775982734219657 28.858126289416308 21.67474718998227 48-49 21.676445914921715 27.863845392531054 28.857715302431806 21.601993390115425 50-51 21.643425992614315 28.01825526775103 28.654996872240883 21.683321867393772 52-53 21.745722307059424 27.971540478499858 28.593892144015133 21.688845070425586 54-55 21.765009491735775 27.89887004806189 28.6345218010224 21.701598659179936 56-57 21.74370805728048 28.002279801476703 28.561260093293928 21.69275204794889 58-59 21.711714737002684 27.992454498387296 28.634498168579903 21.661332596030118 60-61 21.77703747255434 27.993809570392596 28.57087927271133 21.658273684341733 62-63 21.724462171415272 28.022148697450532 28.569587395522777 21.683801735611414 64-65 21.676991944927835 27.97086261432432 28.596929067258102 21.755216373489745 66-67 21.807425096154912 28.000998879105193 28.39698390843305 21.794592116306845 68-69 21.729023795553548 28.029289040485818 28.46530700757742 21.776380156383215 70-71 21.802082730380228 27.754981291371017 28.544238114092018 21.898697864156738 72-73 21.835870363317937 27.79497967246157 28.482383480426837 21.886766483793664 74-75 21.6907293202724 27.930942877914923 28.463138443960805 21.91518935785187 76-77 21.811655421661776 27.906492491238666 28.361462872236316 21.920389214863246 78-79 21.793463645816765 27.934992307446134 28.31935729321455 21.952186753522547 80-81 21.822448994095982 27.924215428836508 28.26332324576466 21.99001233130285 82-83 21.851428692267007 27.852748053528924 28.38144051498841 21.914382739215657 84-85 22.000084189458637 27.86933943075794 28.276071327711268 21.85450505207216 86-87 21.790587578341103 27.922473657746522 28.355729447853516 21.93120931605886 88-89 21.901748438099137 27.89223982050561 28.264965419669064 21.94104632172619 90-91 21.98466311746834 27.9059952010627 28.28243840940453 21.826903272064435 92-93 21.978183669395214 27.902762477231676 28.240350975749017 21.87870287762409 94-95 21.801493626652316 27.99884864008431 28.255096738914077 21.944560994349295 96-97 21.901398717148066 28.137394219845884 28.33247711918852 21.62872994381753 98-99 22.967684748048946 30.03009223169161 28.57626150706409 18.42596151319535 100 21.88210641598762 30.92670843008137 22.585566755478233 24.60561839845278 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1833.0 1 1933.0 2 2913.5 3 4192.5 4 5455.5 5 7442.0 6 9021.5 7 10919.0 8 13305.5 9 14416.0 10 14114.0 11 13967.5 12 15446.0 13 18674.0 14 24305.5 15 30418.0 16 34644.0 17 36764.5 18 35842.0 19 32532.0 20 29524.5 21 28619.0 22 31112.0 23 37934.0 24 49608.5 25 66907.5 26 88255.5 27 111123.0 28 133873.5 29 157578.5 30 180231.0 31 202907.0 32 228230.5 33 252453.5 34 276659.5 35 300176.0 36 324507.5 37 347293.5 38 361369.5 39 371106.0 40 383040.5 41 391109.0 42 395252.0 43 401865.5 44 406218.0 45 408186.5 46 407181.5 47 402937.0 48 396632.0 49 385740.5 50 371622.5 51 354555.5 52 333550.5 53 310935.0 54 287438.0 55 262174.5 56 237694.0 57 211388.5 58 184678.0 59 160433.0 60 134268.0 61 107385.0 62 82495.0 63 62155.0 64 46692.5 65 34280.0 66 24615.5 67 18130.5 68 13690.0 69 9624.5 70 6668.0 71 4797.0 72 3333.0 73 2244.0 74 1420.5 75 868.5 76 567.0 77 343.5 78 200.5 79 136.5 80 86.5 81 54.5 82 36.0 83 24.5 84 17.5 85 13.5 86 11.0 87 10.0 88 6.5 89 3.0 90 2.0 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007765949011231198 3 0.0 4 0.004567604221079402 5 0.003004196064871016 6 0.0 7 0.0 8 0.0 9 3.474240347129746E-4 10-11 6.284287686719982E-4 12-13 5.109176981073156E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.605928043014937E-4 24-25 0.0014921108217279134 26-27 0.0 28-29 0.0019272353629797003 30-31 0.002941713201585169 32-33 5.841541724287838E-4 34-35 3.594191540012492E-5 36-37 0.0011380284301129532 38-39 0.002322810192677364 40-41 0.0014668837724006027 42-43 0.0 44-45 0.0 46-47 0.001282872752858858 48-49 5.393920410835158E-4 50-51 0.001613884745389239 52-53 0.002409764865433315 54-55 0.0018472007525245212 56-57 0.0019197266835756191 58-59 0.0019496326488907668 60-61 8.958814881225868E-4 62-63 7.680183265990646E-4 64-65 0.003314293180116251 66-67 0.002434566336898589 68-69 1.0894416703182075E-4 70-71 0.002798684225210582 72-73 0.009767695054309841 74-75 0.012094024517608265 76-77 0.004737631450766386 78-79 0.004310605773847471 80-81 3.1319026079473474E-4 82-83 8.507296404293949E-5 84-85 6.127322201500299E-5 86-87 0.0020569328117412936 88-89 0.004391850221087609 90-91 5.469883419180115E-4 92-93 0.0010156179829128623 94-95 0.0022180495254559966 96-97 0.0024509098043738404 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 85.0 20-21 392.0 22-23 881.0 24-25 873.0 26-27 2127.0 28-29 5237.0 30-31 14851.0 32-33 18497.0 34-35 24612.0 36-37 40601.0 38-39 53258.0 40-41 51117.0 42-43 56149.0 44-45 67697.0 46-47 70417.0 48-49 68766.0 50-51 63417.0 52-53 56778.0 54-55 59457.0 56-57 62040.0 58-59 65996.0 60-61 68061.0 62-63 63744.0 64-65 64110.0 66-67 69067.0 68-69 72382.0 70-71 74418.0 72-73 66992.0 74-75 64739.0 76-77 67025.0 78-79 72041.0 80-81 74427.0 82-83 69508.0 84-85 65487.0 86-87 67227.0 88-89 72135.0 90-91 75861.0 92-93 76019.0 94-95 87579.0 96-97 294408.0 98-99 673700.0 100-101 6764134.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.78552547339079 #Duplication Level Percentage of deduplicated Percentage of total 1 88.13737122785365 72.96498590941177 2 8.0594950514954 13.344190657764788 3 2.053503015113761 5.100009785021551 4 0.8424559267334409 2.789726263312013 5 0.3574850138749755 1.4797292361251122 6 0.19034762325939739 0.945481680848414 7 0.11081563402424459 0.6421751345354836 8 0.06962052709750456 0.46108575356010856 9 0.039286154062996355 0.2927092417140365 >10 0.1359792265064755 1.7092706000132816 >50 0.0030437416757386274 0.1662826911598503 >100 5.755218326470853E-4 0.08255627677745107 >500 0.0 0.0 >1k 2.1336469890619518E-5 0.021796769756063733 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.0436707924292624E-5 0.0 3 0.0 0.0 0.0 2.0436707924292624E-5 0.0 4 0.0 2.0436707924292624E-5 0.0 2.0436707924292624E-5 0.0 5 0.0 3.0655061886438937E-5 0.0 2.0436707924292624E-5 0.0 6 0.0 3.0655061886438937E-5 0.0 2.0436707924292624E-5 0.0 7 0.0 5.109176981073156E-5 0.0 2.0436707924292624E-5 0.0 8 0.0 5.109176981073156E-5 0.0 2.0436707924292624E-5 0.0 9 0.0 8.17468316971705E-5 0.0 2.0436707924292624E-5 2.0436707924292624E-5 10-11 0.0 9.196518565931681E-5 0.0 3.0655061886438937E-5 2.0436707924292624E-5 12-13 0.0 9.196518565931681E-5 0.0 3.0655061886438937E-5 2.554588490536578E-5 14-15 0.0 2.0436707924292624E-4 0.0 4.087341584858525E-5 4.5982592829658405E-5 16-17 0.0 2.1458543320507256E-4 0.0 4.087341584858525E-5 5.109176981073156E-5 18-19 0.0 2.4013131811043834E-4 0.0 4.087341584858525E-5 5.109176981073156E-5 20-21 0.0 2.656772030158041E-4 0.0 4.5982592829658405E-5 5.620094679180472E-5 22-23 0.0 2.7589555697795043E-4 0.0 6.131012377287787E-5 7.152847773502419E-5 24-25 0.0 3.0144144188331624E-4 0.0 7.663765471609734E-5 9.196518565931681E-5 26-27 0.0 3.167689728265357E-4 0.0 1.1240189358360943E-4 1.0218353962146312E-4 28-29 0.0 3.372056807508283E-4 0.0 2.7589555697795043E-4 1.0218353962146312E-4 30-31 0.0 4.087341584858525E-4 0.0 9.247610335742412E-4 1.0218353962146312E-4 32-33 5.109176981073156E-6 4.24061689429072E-4 0.0 0.0024677324818583343 1.2262024754575575E-4 34-35 2.0436707924292624E-5 4.90480990183023E-4 0.0 0.004230398540328573 1.5327530943219468E-4 36-37 3.0655061886438937E-5 5.56900290936974E-4 0.0 0.007050664233880955 1.5327530943219468E-4 38-39 3.0655061886438937E-5 5.92664529804486E-4 0.0 0.015296875881333029 1.5327530943219468E-4 40-41 5.109176981073156E-5 6.744113615016566E-4 0.0 0.025193351693671734 1.5327530943219468E-4 42-43 5.109176981073156E-5 7.050664233880955E-4 0.0 0.03121196217737591 1.5327530943219468E-4 44-45 5.109176981073156E-5 7.714857241420466E-4 0.0 0.03773127200522526 1.5838448641326784E-4 46-47 5.620094679180472E-5 8.123591399906318E-4 0.0 0.044807482124011574 1.63493663394341E-4 48-49 7.152847773502419E-5 8.327958479149244E-4 0.0 0.05219535203864337 1.737120173564873E-4 50-51 7.152847773502419E-5 8.787784407445827E-4 0.0 0.06009413965138247 1.737120173564873E-4 52-53 7.152847773502419E-5 8.889967947067291E-4 0.0 0.077940494846271 1.7882119433756046E-4 54-55 8.17468316971705E-5 8.992151486688755E-4 0.0 0.09890344799961415 1.8903954829970678E-4 56-57 8.685600867824365E-5 9.298702105553144E-4 0.0 0.12440335031215027 1.992579022618531E-4 58-59 9.196518565931681E-5 9.451977414985338E-4 0.0 0.14649032240132953 2.0436707924292624E-4 60-61 1.0218353962146312E-4 9.605252724417533E-4 0.0 0.155671513436318 2.0436707924292624E-4 62-63 1.0218353962146312E-4 9.656344494228265E-4 0.0 0.16664602559166314 2.1458543320507256E-4 64-65 1.0729271660253628E-4 0.0011086914048928748 0.0 0.17196978800594137 2.1458543320507256E-4 66-67 1.1240189358360943E-4 0.0011240189358360942 0.0 0.17640966280249393 2.1458543320507256E-4 68-69 1.1240189358360943E-4 0.0011648923516846795 0.0 0.18108455974017587 2.1458543320507256E-4 70-71 1.1240189358360943E-4 0.0011904382365900453 0.0 0.18553976206767164 2.2991296414829202E-4 72-73 1.1240189358360943E-4 0.0011955474135711185 0.0 0.18909574924649858 2.452404950915115E-4 74-75 1.2262024754575575E-4 0.0012415300064007768 0.0 0.1918342681083538 2.452404950915115E-4 76-77 1.2262024754575575E-4 0.0013539318999843863 0.0 0.19463920627096293 2.452404950915115E-4 78-79 1.2262024754575575E-4 0.001410132846776191 0.0 0.19643252739131964 2.452404950915115E-4 80-81 1.277294245268289E-4 0.001410132846776191 0.0 0.19707628369093483 2.503496720725846E-4 82-83 1.3283860150790206E-4 0.0014203512007383372 0.0 0.1974441444335721 2.554588490536578E-4 84-85 1.3283860150790206E-4 0.0014458970856437033 0.0 0.19759741974300432 2.554588490536578E-4 86-87 1.3283860150790206E-4 0.001471442970549069 0.0 0.19768427575168257 2.60568026034731E-4 88 1.3283860150790206E-4 0.001604281572056971 0.0 0.1976944941056447 2.656772030158041E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12035 0.0 50.384098 1 GTATCAA 22675 0.0 40.97241 1 ATCAACG 27210 0.0 33.16981 3 TCAACGC 27425 0.0 32.973274 4 CAACGCA 27895 0.0 32.354782 5 TATCAAC 29105 0.0 31.414644 2 AACGCAG 28935 0.0 31.23581 6 ACGCAGA 32940 0.0 27.424868 7 CGCAGAG 33250 0.0 27.130102 8 GCAGAGT 40295 0.0 22.354555 9 TACATGG 33310 0.0 21.818699 2 GTACATG 34310 0.0 21.700348 1 ACATGGG 33670 0.0 21.133347 3 GAGTACT 21495 0.0 19.804571 12-13 AGAGTAC 36735 0.0 19.510553 10-11 CAGAGTA 39395 0.0 19.012142 10-11 CATGGGG 21490 0.0 19.004372 4 AGTACTT 23995 0.0 17.091438 12-13 GTACTTT 24810 0.0 17.088816 14-15 GTGGTAT 5955 0.0 15.419333 1 >>END_MODULE