##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139257_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23153514 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.82245710089622 31.0 31.0 34.0 30.0 34.0 2 31.924933036082557 31.0 31.0 34.0 30.0 34.0 3 32.646872003964496 34.0 31.0 34.0 30.0 37.0 4 35.57004690519115 37.0 35.0 37.0 33.0 37.0 5 35.45891755350829 37.0 35.0 37.0 33.0 37.0 6 35.466056210733285 37.0 35.0 37.0 33.0 37.0 7 35.448272171558926 37.0 35.0 37.0 33.0 37.0 8 35.70146017576425 37.0 35.0 37.0 33.0 39.0 9 36.95717047528941 39.0 37.0 39.0 33.0 39.0 10-11 36.86772571541408 39.0 37.0 39.0 32.0 39.0 12-13 36.95302836105137 39.0 37.0 39.0 32.0 39.5 14-15 37.95290758024894 40.0 37.0 41.0 33.0 41.0 16-17 37.92544177095537 40.0 37.0 41.0 33.0 41.0 18-19 37.95324590902271 40.0 37.0 41.0 32.5 41.0 20-21 37.925477848515094 40.0 37.0 41.0 32.0 41.0 22-23 37.825295447144185 40.0 37.0 41.0 32.0 41.0 24-25 37.71027765451986 40.0 37.0 41.0 32.0 41.0 26-27 37.52882875310095 39.0 36.0 41.0 32.0 41.0 28-29 37.40343770002571 39.0 36.0 41.0 31.5 41.0 30-31 37.22581288220087 39.0 36.0 41.0 31.0 41.0 32-33 37.03504321834658 39.0 36.0 40.5 30.5 41.0 34-35 36.906443190387236 39.0 35.5 40.0 30.0 41.0 36-37 36.757409664556604 38.5 35.0 40.0 30.0 41.0 38-39 36.61006439796677 38.0 35.0 40.0 30.0 41.0 40-41 36.48555269818564 38.0 35.0 40.0 30.0 41.0 42-43 36.297497634080415 38.0 35.0 40.0 30.0 41.0 44-45 36.17047586664597 38.0 35.0 40.0 29.5 41.0 46-47 36.33762708142274 38.0 35.0 40.0 30.0 41.0 48-49 36.72059352033991 39.0 35.0 40.0 30.0 41.0 50-51 36.79602384730444 39.0 35.0 41.0 30.0 41.0 52-53 36.75194829790353 39.0 35.0 40.5 30.0 41.0 54-55 36.640177978196526 39.0 35.0 40.0 30.0 41.0 56-57 36.49789762337339 38.5 35.0 40.0 30.0 41.0 58-59 36.30492250059902 38.0 34.5 40.0 29.0 41.0 60-61 36.13493081793004 38.0 34.0 40.0 29.0 41.0 62-63 35.92277236548076 38.0 34.0 40.0 28.5 41.0 64-65 35.68000294049134 37.0 34.0 40.0 28.0 41.0 66-67 35.42481827249007 37.0 34.0 40.0 28.0 41.0 68-69 35.14884002968735 36.5 33.5 39.0 28.0 41.0 70-71 34.86819162461647 36.0 33.0 39.0 28.0 41.0 72-73 34.54678382998658 35.5 33.0 39.0 28.0 40.0 74-75 34.01732081204947 35.0 32.0 37.5 27.0 39.5 76-77 32.67194474852495 34.0 30.5 36.0 26.0 39.0 78-79 33.57083616380297 35.0 32.0 37.0 27.0 39.0 80-81 33.555201647228174 35.0 32.0 36.5 27.0 39.0 82-83 33.32526049346937 35.0 32.0 36.0 27.0 37.5 84-85 33.109902544086616 35.0 32.0 36.0 27.0 37.0 86-87 32.90249652935183 34.5 32.0 35.0 27.0 37.0 88-89 32.756387027929755 34.0 32.0 35.0 27.0 36.0 90-91 32.62984185142858 34.0 32.0 35.0 27.0 36.0 92-93 32.55433685686693 34.0 32.0 35.0 27.0 36.0 94-95 32.544653370761765 34.0 32.0 35.0 27.0 35.5 96-97 32.62368275008681 34.0 32.0 35.0 27.5 35.0 98-99 32.61413493197021 34.0 31.5 35.0 28.0 35.0 100 31.34177043740237 33.0 30.0 34.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 13.0 19 45.0 20 306.0 21 1846.0 22 8349.0 23 27761.0 24 69595.0 25 140205.0 26 239226.0 27 361179.0 28 493567.0 29 628877.0 30 768580.0 31 919024.0 32 1096484.0 33 1324985.0 34 1650599.0 35 2108123.0 36 2875348.0 37 4035280.0 38 4315987.0 39 2004890.0 40 83240.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.001372479589506 5.184385253741959E-5 26.317507824533443 29.681067852024512 2 14.680943581059012 26.15597180053879 37.63800003346517 21.525084584937034 3 16.012531497941758 26.25534276744459 34.151441572735216 23.58068416187844 4 12.803259053329022 25.024842926365427 38.04150841826228 24.13038960204327 5 16.37968215105491 37.72048597029375 32.923451705862014 12.976380172789323 6 26.156431373656712 38.7984087426211 21.529064659472425 13.51609522424976 7 24.609466390694145 33.55382399206548 24.04431673068359 17.792392886556783 8 23.519459012548115 32.646389340572206 23.1852289542412 20.64892269263848 9 23.33930996547046 20.732067900898645 24.72948375684583 31.19913837678506 10-11 23.946395383745802 26.57343335395945 29.755139300591864 19.72503196170288 12-13 24.39076286722032 24.756478554758772 29.34648771319936 21.50627086482155 14-15 21.815332321284814 27.073141557214814 27.32422812152676 23.78729799997361 16-17 20.957795115091717 29.220336783992597 28.24729453803346 21.574573562882225 18-19 21.116051809888745 28.432659950473997 29.747258459252045 20.70402978038521 20-21 21.908071149115603 27.86161713066708 29.47131773255765 20.758993987659665 22-23 21.73040085188678 27.64253406508135 29.286197919557978 21.3408671634739 24-25 21.434935599910744 27.877610887208515 29.441963558873752 21.24548995400699 26-27 21.43023005515128 28.063598192256407 29.228418281432816 21.2777534711595 28-29 21.44265598868643 27.939414249285495 29.257964748652217 21.35996501337586 30-31 21.623593949599996 27.892972207449628 29.235245431616995 21.248188411333377 32-33 21.526946839011153 28.166475324410516 29.095578216481577 21.21099962009675 34-35 21.633028881500405 27.998476531144938 29.072566102334097 21.295928485020557 36-37 21.57810232808285 28.04870121432284 29.10258023980549 21.27061621778882 38-39 21.45920034914012 28.234187638059428 29.069553298068996 21.237058714731457 40-41 21.730032339231308 27.93424430961011 28.87439033101137 21.461333020147215 42-43 21.58936322497384 28.037633419734686 28.878362627415772 21.4946407278757 44-45 21.672115941155727 28.36104108763263 28.524727913807375 21.44211505740427 46-47 21.799909340823024 28.207988875738486 28.249950928071776 21.742150855366717 48-49 21.67771331760856 28.295965125034815 28.346611725413677 21.679709831942944 50-51 21.683663325150256 28.566647640827668 28.089550870331216 21.660138163690856 52-53 21.870951053278695 28.256702081952938 28.09723857126719 21.775108293501173 54-55 21.760066605526717 28.21278353121291 28.258632599005516 21.768517264254857 56-57 21.785299530245553 28.52167762417846 28.051364189880644 21.64165865569534 58-59 21.868627969160638 28.338243384240315 28.094862073079412 21.698266573519636 60-61 21.794006925864544 28.39219235323267 28.139372114425136 21.67442860647765 62-63 21.76937590161204 28.566163550869746 28.045322720931853 21.619137826586364 64-65 21.81865051326504 28.342415848883572 28.039707617393937 21.799226020457454 66-67 21.776097472758718 28.412623534307208 28.008569099574494 21.802709893359587 68-69 21.779094055531463 28.502877666555943 28.02868502181568 21.689343256096915 70-71 21.831867041003253 28.13057914164483 28.09243304110966 21.945120776242256 72-73 21.788751871978313 28.271741582602782 28.059530879684207 21.879975665734698 74-75 21.63177395982213 28.43180880140917 28.12287448945292 21.813542749315772 76-77 21.87656680781305 28.234226952683212 27.985921443936252 21.903284795567487 78-79 21.68016572805727 28.34229586582599 28.104232384655436 21.873306021461303 80-81 21.760313966976387 28.377218053263668 28.01207232734506 21.850395652414882 82-83 21.86043987420238 28.15470147564031 28.151087106622896 21.833771543534418 84-85 21.83165889914763 28.211500687796747 28.1898874804508 21.76695293260483 86-87 21.7079568517032 28.314783805849668 28.169317605986283 21.807941736460847 88-89 21.815033254679868 28.13849821979956 28.127924732382997 21.918543793137584 90-91 21.8564052139095 28.11428823016029 28.2526191501014 21.776687405828806 92-93 21.741833047552323 28.145576408154927 28.293723039469782 21.818867504822975 94-95 21.712237199160235 28.070215693728624 28.338924980513212 21.87862212659793 96-97 21.65394421274428 28.40312749797938 28.53000046826441 21.41292782101193 98-99 22.683557678248867 30.45122095479753 28.157469522900563 18.707751844053035 100 22.182042363417114 30.561151514649644 22.446888676884928 24.809917445048317 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4112.0 1 3893.0 2 6613.5 3 10041.0 4 13363.0 5 21821.0 6 29004.0 7 33892.5 8 37172.0 9 36163.0 10 32387.0 11 28127.0 12 29428.0 13 37194.5 14 58170.5 15 91573.5 16 120906.5 17 138060.5 18 141850.5 19 136230.5 20 126899.5 21 117946.5 22 115010.0 23 124590.0 24 148938.0 25 187279.5 26 237624.0 27 293730.5 28 350372.0 29 410930.0 30 468271.0 31 521880.5 32 581591.0 33 637222.0 34 688728.5 35 735562.5 36 782473.5 37 831063.5 38 864782.5 39 884662.5 40 909263.5 41 933899.0 42 945963.5 43 954847.0 44 960508.5 45 964550.5 46 961290.5 47 949624.0 48 935094.0 49 910040.5 50 881197.5 51 847531.5 52 799271.0 53 745055.5 54 693105.5 55 637939.5 56 581064.5 57 524143.5 58 463711.5 59 401689.5 60 337640.0 61 276514.5 62 221493.0 63 173043.5 64 131741.5 65 98405.0 66 73945.5 67 57174.0 68 44615.0 69 32797.0 70 23571.5 71 17382.0 72 12627.5 73 8929.0 74 6315.0 75 4565.5 76 3221.0 77 2179.5 78 1503.5 79 1055.0 80 769.5 81 578.5 82 460.5 83 346.0 84 243.0 85 164.5 86 115.0 87 97.5 88 74.5 89 54.5 90 40.5 91 30.0 92 21.0 93 11.0 94 6.5 95 6.5 96 6.0 97 6.0 98 3.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.030604425747210555 2 0.10791882389860993 3 7.342298020075916E-5 4 1.8139795108422852E-4 5 0.0 6 0.0 7 4.318998835338774E-6 8 4.318998835338774E-6 9 2.5913993012032642E-5 10-11 9.933697321279181E-5 12-13 3.887098951804897E-5 14-15 6.240953317064529E-4 16-17 0.0013194541441959955 18-19 8.206097787143671E-5 20-21 5.507081123689021E-4 22-23 0.002207516199540111 24-25 5.83398261598503E-4 26-27 0.0048363459026367255 28-29 0.004050536063132105 30-31 0.009507450768330754 32-33 0.008401752648621561 34-35 0.0039100896463245445 36-37 0.006979424119133952 38-39 2.2684541997665517E-4 40-41 5.078308402608999E-4 42-43 0.0017632770009165688 44-45 9.020172284839632E-6 46-47 2.2784407217507812E-5 48-49 7.360416091682078E-5 50-51 2.7840420011712463E-5 52-53 5.542987422774432E-4 54-55 0.0021456290294647917 56-57 0.0 58-59 0.0 60-61 0.0 62-63 2.4478708162613722E-6 64-65 9.88523709283975E-6 66-67 1.997179383556603E-5 68-69 2.3220062921827463E-4 70-71 6.229146400666458E-4 72-73 3.5382960630232E-4 74-75 6.505322987065615E-4 76-77 0.0019846499089452665 78-79 0.006371734248895127 80-81 6.636555845303671E-4 82-83 4.11970455236691E-4 84-85 0.0 86-87 0.0 88-89 2.8701105084389285E-6 90-91 5.554633681263893E-5 92-93 3.134263053265338E-4 94-95 8.26034629023718E-5 96-97 5.718286699646355E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 910.0 20-21 3092.0 22-23 6180.0 24-25 12520.0 26-27 16863.0 28-29 29329.0 30-31 56195.0 32-33 66495.0 34-35 94340.0 36-37 126950.0 38-39 153735.0 40-41 167455.0 42-43 192848.0 44-45 227523.0 46-47 212887.0 48-49 190408.0 50-51 175528.0 52-53 169620.0 54-55 182312.0 56-57 193940.0 58-59 199383.0 60-61 200818.0 62-63 193257.0 64-65 199175.0 66-67 216263.0 68-69 223222.0 70-71 227284.0 72-73 221260.0 74-75 222361.0 76-77 213175.0 78-79 236924.0 80-81 253151.0 82-83 249419.0 84-85 252356.0 86-87 270814.0 88-89 308157.0 90-91 343263.0 92-93 389142.0 94-95 505514.0 96-97 1310675.0 98-99 4132678.0 100-101 1.0506093E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.8453282571497 #Duplication Level Percentage of deduplicated Percentage of total 1 87.25684068179856 70.54307927601819 2 8.296141368480196 13.414085444050011 3 2.320008135613313 5.626854578487485 4 0.9531402318312944 3.08227739669987 5 0.4589543731637673 1.855215847673957 6 0.24440042934997355 1.1855179762192163 7 0.14079099576979923 0.7967605988062275 8 0.09535978722226213 0.6167514640412585 9 0.05486333734708092 0.39919000653967474 >10 0.17468999430647977 2.090643820860501 >50 0.003505169491886328 0.18833345556394243 >100 0.0012530782086257462 0.15663999713528529 >500 3.146960069782908E-5 0.021957038480251097 >1k 2.094781603490804E-5 0.022693099424134944 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.637997670677548E-6 2 0.0 6.0465983694742834E-5 0.0 0.0 8.637997670677548E-6 3 0.0 6.0465983694742834E-5 0.0 0.0 8.637997670677548E-6 4 0.0 6.0465983694742834E-5 0.0 4.318998835338774E-6 8.637997670677548E-6 5 0.0 6.0465983694742834E-5 0.0 4.318998835338774E-6 8.637997670677548E-6 6 4.7508987188726516E-5 6.0465983694742834E-5 0.0 4.318998835338774E-5 2.159499417669387E-5 7 4.7508987188726516E-5 6.0465983694742834E-5 0.0 4.318998835338774E-5 2.159499417669387E-5 8 5.182798602406529E-5 7.774197903609793E-5 0.0 4.7508987188726516E-5 2.5913993012032646E-5 9 5.182798602406529E-5 1.2525096622482444E-4 0.0 5.182798602406529E-5 3.0232991847371417E-5 10-11 5.398748544173468E-5 1.2525096622482444E-4 0.0 5.182798602406529E-5 3.0232991847371417E-5 12-13 5.6146984859404066E-5 1.2741046564249383E-4 0.0 8.637997670677548E-5 3.2392491265040804E-5 14-15 6.0465983694742834E-5 2.2458793943761624E-4 0.0 9.069897554211426E-5 3.887098951804897E-5 16-17 9.501797437745303E-5 2.461829336143101E-4 0.0 9.717747379512242E-5 3.887098951804897E-5 18-19 9.501797437745303E-5 2.461829336143101E-4 0.0 1.2525096622482444E-4 4.7508987188726516E-5 20-21 9.501797437745303E-5 2.461829336143101E-4 0.0 1.4252696156617954E-4 4.7508987188726516E-5 22-23 1.014964726304612E-4 2.807349242970203E-4 0.0 1.5764345748986525E-4 5.398748544173467E-5 24-25 1.0365597204813058E-4 3.023299184737142E-4 0.0 1.835574505018979E-4 6.0465983694742834E-5 26-27 1.0365597204813058E-4 3.196059138150693E-4 0.0 2.8937292196769786E-4 6.910398136542038E-5 28-29 1.0365597204813058E-4 3.196059138150693E-4 0.0 6.435308264654773E-4 6.910398136542038E-5 30-31 1.0581547146579997E-4 3.7791239809214274E-4 0.0 0.0016995260417058075 7.126348078308977E-5 32-33 1.0797497088346936E-4 3.843908963451509E-4 0.0 0.0039043749471462516 7.774197903609793E-5 34-35 1.1229396971880813E-4 4.29740384116208E-4 0.0 0.007005416110919491 9.069897554211426E-5 36-37 1.1229396971880813E-4 4.750898718872651E-4 0.0 0.011209961477121787 9.069897554211426E-5 38-39 1.1229396971880813E-4 4.815683701402733E-4 0.0 0.017876336179467184 9.069897554211426E-5 40-41 1.1661296855414689E-4 5.441938532526855E-4 0.0 0.02370698460717453 9.501797437745303E-5 42-43 1.1661296855414689E-4 5.938623398590814E-4 0.0 0.0300084039079338 1.014964726304612E-4 44-45 1.1661296855414689E-4 6.435308264654773E-4 0.0 0.03656032514114273 1.1229396971880812E-4 46-47 1.1661296855414689E-4 6.435308264654773E-4 0.0 0.04515297332404922 1.2741046564249383E-4 48-49 1.2093196738948567E-4 6.435308264654773E-4 0.0 0.05275009227541012 1.4684596040151832E-4 50-51 1.2525096622482444E-4 7.061563095778896E-4 0.0 0.06138593044667 1.4684596040151832E-4 52-53 1.2525096622482444E-4 7.104753084132283E-4 0.0 0.06861161549819177 1.6196245632520403E-4 54-55 1.2525096622482444E-4 7.169538066662365E-4 0.0 0.07709412921079711 1.7707895224888974E-4 56-57 1.2525096622482444E-4 7.342298020075916E-4 0.0 0.08507563905850317 1.7923845166655913E-4 58-59 1.2525096622482444E-4 7.407083002605998E-4 0.0 0.09361861875480326 1.8139795108422852E-4 60-61 1.2525096622482444E-4 7.558247961842855E-4 0.0 0.1021529604534327 1.8139795108422852E-4 62-63 1.3820796273084077E-4 7.774197903609794E-4 0.0 0.10908927258298676 1.9867394642558361E-4 64-65 1.4252696156617954E-4 8.897137600797875E-4 0.0 0.11513587095246104 1.9867394642558361E-4 66-67 1.4684596040151832E-4 9.069897554211426E-4 0.0 0.12122565931028871 2.0515244467859178E-4 68-69 1.4684596040151832E-4 9.437012455215221E-4 0.0 0.12693969476944192 2.1163094293159994E-4 70-71 1.490054598191877E-4 9.588177414452078E-4 0.0 0.1318503964452221 2.202689406022775E-4 72-73 1.5980295690753464E-4 9.696152385335547E-4 0.0 0.13571374090343263 2.461829336143101E-4 74-75 1.5980295690753464E-4 0.0010128052268869425 0.0 0.13909767649092056 2.461829336143101E-4 76-77 1.6412195574287342E-4 0.001071111711164016 0.0 0.14214257066983438 2.505019324496489E-4 78-79 1.684409545782122E-4 0.0010840687076700323 0.0 0.14390904119348796 2.505019324496489E-4 80-81 1.684409545782122E-4 0.0010840687076700323 0.0 0.14452233902810607 2.612994295379958E-4 82-83 1.684409545782122E-4 0.0010862282070877017 0.0 0.14496935540756362 2.7209692662634276E-4 84-85 1.7275995341355097E-4 0.0011013447030113874 0.0 0.14517234835282455 2.7209692662634276E-4 86-87 1.7275995341355097E-4 0.0011229396971880812 0.0 0.14526520682778432 2.7209692662634276E-4 88 1.7275995341355097E-4 0.0011747676832121465 0.0 0.145273844825455 2.7209692662634276E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 28180 0.0 48.9567 1 GTATCAA 50625 0.0 36.348934 1 ATCAACG 59965 0.0 29.918566 3 TCAACGC 62690 0.0 28.618008 4 CAACGCA 63605 0.0 28.193096 5 AACGCAG 64500 0.0 27.782429 6 TATCAAC 66010 0.0 27.437162 2 ACGCAGA 65770 0.0 27.265045 7 CGCAGAG 75870 0.0 23.596897 8 GTACATG 68695 0.0 20.839437 1 TACATGG 68170 0.0 20.342222 2 ACATGGG 67015 0.0 20.201675 3 GCAGAGT 90460 0.0 19.592314 9 AGAGTAC 81355 0.0 18.541924 10-11 GAGTACT 52035 0.0 18.3573 12-13 CAGAGTA 87965 0.0 17.6886 10-11 CATGGGG 48095 0.0 17.280787 4 GTGGTAT 13120 0.0 16.577795 1 AGTACTT 58155 0.0 16.054844 12-13 GTACTTT 60710 0.0 15.755863 14-15 >>END_MODULE