##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139255_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 19205399 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.674460082813173 31.0 31.0 34.0 30.0 34.0 2 31.810254189459954 31.0 31.0 34.0 30.0 34.0 3 31.856580068969148 31.0 31.0 34.0 30.0 34.0 4 35.6058467725664 37.0 35.0 37.0 33.0 37.0 5 35.4583934444684 37.0 35.0 37.0 33.0 37.0 6 35.477910091844485 37.0 35.0 37.0 33.0 37.0 7 35.38592736344608 37.0 35.0 37.0 33.0 37.0 8 35.37077407243661 37.0 35.0 37.0 32.0 37.0 9 36.98208347558934 39.0 37.0 39.0 33.0 39.0 10-11 36.86745386024003 39.0 37.0 39.0 32.5 39.0 12-13 36.79931408871016 39.0 37.0 39.0 32.0 39.0 14-15 37.95677098403423 40.0 37.0 41.0 33.0 41.0 16-17 37.934201262884464 40.0 37.0 41.0 33.0 41.0 18-19 37.95535651198915 40.0 37.0 41.0 33.0 41.0 20-21 37.93611301912677 40.0 37.0 41.0 32.0 41.0 22-23 37.83985965982719 40.0 37.0 41.0 32.0 41.0 24-25 37.73488007685211 40.0 37.0 41.0 32.0 41.0 26-27 37.549262374902845 39.0 36.5 41.0 32.0 41.0 28-29 37.42142857528249 39.0 36.0 41.0 31.5 41.0 30-31 37.245677507574186 39.0 36.0 41.0 31.0 41.0 32-33 37.05306974575923 39.0 36.0 40.5 31.0 41.0 34-35 36.9290127261553 39.0 35.5 40.0 30.0 41.0 36-37 36.779083040599176 39.0 35.0 40.0 30.0 41.0 38-39 36.63173273606657 38.0 35.0 40.0 30.0 41.0 40-41 36.50568081925463 38.0 35.0 40.0 30.0 41.0 42-43 36.31914585764659 38.0 35.0 40.0 30.0 41.0 44-45 36.16075188668286 38.0 35.0 40.0 29.5 41.0 46-47 36.2927817919699 38.0 35.0 40.0 30.0 41.0 48-49 36.70690168026782 39.0 35.0 40.0 30.0 41.0 50-51 36.80808691082771 39.0 35.0 41.0 30.0 41.0 52-53 36.76827194326066 39.0 35.0 41.0 30.0 41.0 54-55 36.66469314797372 39.0 35.0 40.0 30.0 41.0 56-57 36.52921524627628 38.5 35.0 40.0 30.0 41.0 58-59 36.33585847885534 38.0 34.5 40.0 29.0 41.0 60-61 36.16901441243674 38.0 34.0 40.0 29.0 41.0 62-63 35.96539620500323 38.0 34.0 40.0 29.0 41.0 64-65 35.72246281261219 37.5 34.0 40.0 28.0 41.0 66-67 35.47030393797588 37.0 34.0 40.0 28.0 41.0 68-69 35.20018999254388 36.5 33.5 39.0 28.0 41.0 70-71 34.917802463611594 36.0 33.0 39.0 28.0 41.0 72-73 34.61170843227954 36.0 33.0 39.0 28.0 40.0 74-75 34.29421927632487 35.0 32.5 38.0 28.0 40.0 76-77 32.51117132617764 34.0 30.5 36.0 25.5 39.0 78-79 33.564679844771426 35.0 32.0 37.0 27.0 39.0 80-81 33.59334987403149 35.0 32.0 36.5 27.5 39.0 82-83 33.36212335819701 35.0 32.0 36.0 27.0 38.5 84-85 33.143614945548904 35.0 32.0 36.0 27.0 37.0 86-87 32.92647538034488 34.5 32.0 35.0 27.0 37.0 88-89 32.77201100201034 34.0 32.0 35.0 27.0 36.5 90-91 32.642022507035904 34.0 32.0 35.0 27.0 36.0 92-93 32.55721402747359 34.0 32.0 35.0 27.0 36.0 94-95 32.531571876923124 34.0 32.0 35.0 27.0 35.5 96-97 32.61087717908752 34.0 32.0 35.0 27.5 35.0 98-99 32.753246089044104 34.0 32.0 35.0 29.0 35.0 100 31.36804255545189 33.0 30.0 34.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 4.0 19 26.0 20 216.0 21 1464.0 22 6726.0 23 22918.0 24 56959.0 25 115321.0 26 198159.0 27 299172.0 28 409764.0 29 524619.0 30 641009.0 31 766572.0 32 912047.0 33 1102993.0 34 1373812.0 35 1755962.0 36 2391059.0 37 3365659.0 38 3592296.0 39 1618412.0 40 50228.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.6906619852053 21.764317419284026 14.946401269767945 23.598619325742725 2 14.25125208707249 22.820312117904486 41.168467563470415 21.759968231552605 3 17.310075151263455 28.15823821207776 31.49423763598975 23.03744900066903 4 12.212244094611187 19.812916615899535 40.15419149049171 27.820647798997573 5 12.314672556399376 38.8932247645571 36.47426955305641 12.317833125987125 6 27.742188537712753 40.161654543079266 19.740438613121235 12.355718306086741 7 24.640060849555898 33.570117444579 24.93942979263279 16.850391913232315 8 23.548820828976268 37.39817641903716 22.233971811780634 16.819030940205927 9 25.348299266950768 16.784153619334568 21.94425576771527 35.923291345999395 10-11 23.202921805829128 27.41114040787419 30.134212892291707 19.25172489400498 12-13 24.383103760284055 25.069993995177658 29.925324378211904 20.62157786632638 14-15 21.549101686205198 26.23789571897009 27.534943595255147 24.678058999569576 16-17 21.037795871479258 29.31944801916284 28.1001564845814 21.5425996247765 18-19 21.104126009153106 28.622217862336992 29.648450148014373 20.625205980495537 20-21 21.963991605697633 27.837615765266964 29.404313370451746 20.794079258583658 22-23 21.62482712739259 27.811583889758595 29.305619343743306 21.257969639105507 24-25 21.41125568752739 27.954112960627043 29.35740041169656 21.27723094014901 26-27 21.431346155630553 28.073711719024736 29.19112059340614 21.303821531938574 28-29 21.3874264861061 28.12125495534332 29.20809373198678 21.2832248265638 30-31 21.697347075434138 27.958205269361052 29.141202118084802 21.203245537120008 32-33 21.501916989569512 28.175066680061516 29.02552096138711 21.297495368981863 34-35 21.55556249007759 28.170022187318462 29.10895384434667 21.16546147825728 36-37 21.599196693329247 28.134523056975873 28.997411400915045 21.268868848779828 38-39 21.478691389082492 28.208166972084207 29.051021223048018 21.26212041578528 40-41 21.674222592378165 28.07209930352125 28.92659692261924 21.327081181481347 42-43 21.598186761761703 28.215383691759193 28.741457539111682 21.444972007367426 44-45 21.680114248655418 28.31425952491074 28.55166102147339 21.453965204960454 46-47 21.764913168054942 28.29046074669494 28.260051257946685 21.684574827303436 48-49 21.698071691354297 28.365669459889187 28.29753451592133 21.638724332835185 50-51 21.679658404824185 28.477042178137125 28.176141080999805 21.667158336038888 52-53 21.78550336883523 28.37711029663721 28.138380105511416 21.699006229016142 54-55 21.768464528130696 28.307923110622962 28.188900774753627 21.734711586492715 56-57 21.78462114800947 28.378731364063125 28.145767389744965 21.69088009818244 58-59 21.770853549024913 28.497259257915026 28.12917233091321 21.60271486214685 60-61 21.828097207694324 28.44679038059592 28.110032990711787 21.61507942099797 62-63 21.759520953004014 28.514931336852527 28.059154492302735 21.666393217840724 64-65 21.742342581775414 28.489317715324603 28.06043313132519 21.707906571574792 66-67 21.82322463015324 28.484367569570225 27.95319536148668 21.739212438789853 68-69 21.743122131688782 28.443250652187118 28.054632397650238 21.758994818473866 70-71 21.782910690949283 28.203141168018064 28.12575108621455 21.888197054818097 72-73 21.792857349538654 28.286460450321933 28.084608012724626 21.836074187414788 74-75 21.66915715857422 28.352069035035356 28.073536665019454 21.90523714137097 76-77 21.738598622430395 28.33130170522124 28.068460215145542 21.861639457202823 78-79 21.766665102517454 28.31580924150101 28.043743632796602 21.873782023184933 80-81 21.7680503745542 28.318364695141163 28.05691113707791 21.856673793226726 82-83 21.78687557855374 28.261139375357608 28.15930435725117 21.792680688837486 84-85 21.871157712816082 28.24414619231501 28.091384346138838 21.793311748730066 86-87 21.707151542601487 28.266073798988433 28.192910626105522 21.833864032304554 88-89 21.800944817996502 28.21424223913511 28.159752564510416 21.825060378357968 90-91 21.78452866385074 28.188710414253887 28.279282878739714 21.747478043155656 92-93 21.815847196739817 28.122966439543912 28.261214605775304 21.79997175794097 94-95 21.608622042795876 28.159236160126138 28.383614598567057 21.84852719851093 96-97 21.643279664994182 28.31313801395556 28.47535501487417 21.568227306176095 98-99 22.680298108828094 30.269700737860898 28.771141710445992 18.278859442865013 100 21.989143311637545 30.972399633654057 22.58779771400988 24.450659340698515 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3033.0 1 2975.0 2 5184.5 3 7856.0 4 10574.5 5 17292.5 6 23034.5 7 26934.0 8 29437.0 9 28607.5 10 25695.0 11 22531.5 12 23658.5 13 30499.0 14 48159.5 15 73912.0 16 94787.5 17 106618.0 18 110373.0 19 107808.5 20 102020.5 21 96703.0 22 96174.0 23 105712.5 24 126943.5 25 160105.0 26 204058.5 27 250563.0 28 296386.5 29 344999.5 30 390281.5 31 433519.0 32 482810.0 33 531163.5 34 575939.5 35 617958.5 36 662323.0 37 703576.5 38 727364.5 39 742788.5 40 762305.5 41 777579.5 42 782917.5 43 788775.5 44 794833.5 45 799921.5 46 799143.0 47 790931.0 48 777684.0 49 753796.5 50 727507.5 51 696293.5 52 654447.0 53 611001.5 54 567885.5 55 521094.0 56 473031.5 57 423921.5 58 374293.5 59 324309.5 60 270229.5 61 219473.5 62 175126.0 63 135890.0 64 103272.0 65 77734.5 66 58464.5 67 44463.5 68 34112.0 69 24973.0 70 18002.5 71 13350.0 72 9599.0 73 6771.5 74 4778.0 75 3361.0 76 2365.0 77 1615.0 78 1085.5 79 753.0 80 569.0 81 432.5 82 328.0 83 222.0 84 149.5 85 111.0 86 84.0 87 64.5 88 45.0 89 28.5 90 18.5 91 14.0 92 11.0 93 6.5 94 2.5 95 2.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.13861206424297667 3 0.0 4 3.072052811816094E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 2.0827476690278602E-5 10-11 8.330990676111441E-5 12-13 7.810303758854477E-6 14-15 2.889812390776156E-4 16-17 0.0016245431818417311 18-19 2.6034345862848252E-6 20-21 4.061591536205613E-4 22-23 0.0022862969231521183 24-25 0.0 26-27 0.004475033833158385 28-29 0.0033046919740169307 30-31 0.00889134953707779 32-33 0.009408857435017673 34-35 0.003052147222343777 36-37 0.007461990338344684 38-39 2.149017032976348E-4 40-41 2.9385927875232053E-5 42-43 0.0022533053324026494 44-45 2.1728120536314114E-5 46-47 0.0 48-49 1.0800991564259419E-4 50-51 0.0 52-53 5.6316905363523515E-6 54-55 0.00261705472687202 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.946983533843317E-6 66-67 0.0 68-69 2.1855631110944497E-4 70-71 5.003379429805671E-4 72-73 4.8121965774229803E-4 74-75 4.8037749005084846E-4 76-77 0.001114556923137011 78-79 0.006998034127283162 80-81 8.098298118257984E-4 82-83 4.153553990119882E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.965693253487343E-4 94-95 1.170446104193917E-4 96-97 4.530777229914517E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 660.0 20-21 2368.0 22-23 4919.0 24-25 10164.0 26-27 13098.0 28-29 20917.0 30-31 47238.0 32-33 53872.0 34-35 73183.0 36-37 101672.0 38-39 127743.0 40-41 139080.0 42-43 157210.0 44-45 185885.0 46-47 173832.0 48-49 156681.0 50-51 145565.0 52-53 139815.0 54-55 148755.0 56-57 159282.0 58-59 163495.0 60-61 166047.0 62-63 158817.0 64-65 163204.0 66-67 175531.0 68-69 181066.0 70-71 185115.0 72-73 180110.0 74-75 182904.0 76-77 171200.0 78-79 191510.0 80-81 205972.0 82-83 202753.0 84-85 204871.0 86-87 219437.0 88-89 246013.0 90-91 276663.0 92-93 312429.0 94-95 373195.0 96-97 792950.0 98-99 1370182.0 100-101 1.1219996E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.32727825407787 #Duplication Level Percentage of deduplicated Percentage of total 1 88.26624188986501 72.66719456508662 2 7.764376031231078 12.784398919849075 3 2.116235981631024 5.226718455330868 4 0.8375317130703755 2.758068255542373 5 0.39202520819000863 1.613718419863582 6 0.19938431441171484 0.9848860759243078 7 0.12306156338054275 0.7091926499568247 8 0.08102755041479252 0.5336622151395958 9 0.05354375156360823 0.39673002003699526 >10 0.1636910432860815 2.0454450822638734 >50 0.0021160685004296114 0.11441556292761729 >100 6.837223640825719E-4 0.08559991365547952 >500 4.6398638118943135E-5 0.030514842772192026 >1k 3.476345318273848E-5 0.04945502165061279 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.2068691725696505E-6 2 0.0 2.6034345862848254E-5 0.0 0.0 5.2068691725696505E-6 3 0.0 2.6034345862848254E-5 0.0 5.2068691725696505E-6 5.2068691725696505E-6 4 0.0 8.330990676111441E-5 0.0 3.6448084207987555E-5 5.2068691725696505E-6 5 0.0 8.851677593368406E-5 0.0 3.6448084207987555E-5 5.2068691725696505E-6 6 2.0827476690278602E-5 8.851677593368406E-5 0.0 3.6448084207987555E-5 1.0413738345139301E-5 7 2.0827476690278602E-5 8.851677593368406E-5 0.0 5.727556089826616E-5 1.0413738345139301E-5 8 2.0827476690278602E-5 1.0934425262396267E-4 0.0 5.727556089826616E-5 2.6034345862848254E-5 9 2.0827476690278602E-5 1.9265415938507708E-4 0.0 1.0413738345139302E-4 2.6034345862848254E-5 10-11 2.0827476690278602E-5 2.0046446314393154E-4 0.0 1.0674081803767785E-4 2.6034345862848254E-5 12-13 2.0827476690278602E-5 2.1087820148907088E-4 0.0 1.431889022456654E-4 2.6034345862848254E-5 14-15 2.6034345862848254E-5 2.9418810825018526E-4 0.0 1.4839577141823504E-4 3.1241215035417906E-5 16-17 4.686182255312686E-5 3.046018465953246E-4 0.0 1.822404210399378E-4 4.686182255312686E-5 18-19 4.686182255312686E-5 3.3323962704445763E-4 0.0 2.0827476690278603E-4 4.946525713941168E-5 20-21 4.686182255312686E-5 3.6968771125244523E-4 0.0 2.2910224359306463E-4 5.4672126311981336E-5 22-23 4.686182255312686E-5 4.3477357590956587E-4 0.0 2.9939497742275496E-4 6.248243007083581E-5 24-25 4.686182255312686E-5 5.024628751529713E-4 0.0 3.150155849404639E-4 6.508586465712063E-5 26-27 4.686182255312686E-5 5.311006556021044E-4 0.0 3.670842766661604E-4 6.768929924340547E-5 28-29 4.686182255312686E-5 5.415143939472436E-4 0.0 6.820998616066242E-4 7.029273382969029E-5 30-31 4.686182255312686E-5 5.831693473278009E-4 0.0 0.0015959054013925979 7.289616841597511E-5 32-33 4.686182255312686E-5 5.831693473278009E-4 0.0 0.003772376715526712 7.549960300225994E-5 34-35 4.686182255312686E-5 6.56065515743776E-4 0.0 0.006443500601054943 8.330990676111441E-5 36-37 4.946525713941168E-5 7.393754225048905E-4 0.0 0.010702719584216917 8.330990676111441E-5 38-39 5.206869172569651E-5 7.75823506712878E-4 0.0 0.01697439350257706 8.330990676111441E-5 40-41 5.206869172569651E-5 8.877711939231255E-4 0.0 0.023230446813419497 8.591334134739923E-5 42-43 5.206869172569651E-5 9.190124089585433E-4 0.0 0.030751769333196358 8.851677593368406E-5 44-45 6.508586465712063E-5 9.99718881133373E-4 0.0 0.03819238538079839 9.11202105199689E-5 46-47 7.810303758854477E-5 0.0010595978766179239 0.0 0.04820259136506354 9.893051427882336E-5 48-49 7.810303758854477E-5 0.0010674081803767783 0.0 0.05695013157498056 1.0413738345139302E-4 50-51 8.851677593368406E-5 0.001163735260069317 0.0 0.06706707837728339 1.0413738345139302E-4 52-53 8.851677593368406E-5 0.001176752433000741 0.0 0.07592916970899694 1.1194768721024749E-4 54-55 8.851677593368406E-5 0.0011897696059321651 0.0 0.08579097992184385 1.1975799096910197E-4 56-57 8.851677593368406E-5 0.0012027867788635893 0.0 0.09469212277235167 1.223614255553868E-4 58-59 8.851677593368406E-5 0.0012158039517950136 0.0 0.10344226641685497 1.2756829472795645E-4 60-61 1.0934425262396267E-4 0.0012548554705892859 0.0 0.11207525550497545 1.3537859848681094E-4 62-63 1.3537859848681094E-4 0.0012887001202109886 0.0 0.11892228846690454 1.4839577141823504E-4 64-65 1.3537859848681094E-4 0.001431889022456654 0.0 0.1251731349085744 1.536026405908047E-4 66-67 1.3537859848681094E-4 0.001444906195388078 0.0 0.13136149892017343 1.5620607517708953E-4 68-69 1.3537859848681094E-4 0.0014865611487686354 0.0 0.13724265765059085 1.5880950976337435E-4 70-71 1.3798203307309576E-4 0.001491768017941205 0.0 0.14206421850439035 1.6661981352222881E-4 72-73 1.5620607517708953E-4 0.0015047851908726291 0.0 0.14576630248608735 1.8744729021250744E-4 74-75 1.5620607517708953E-4 0.0015438367096669015 0.0 0.14882273469038576 1.8744729021250744E-4 76-77 1.5880950976337435E-4 0.0016167328780828767 0.0 0.15149646201050027 1.8744729021250744E-4 78-79 1.6141294434965917E-4 0.0016427672239457249 0.0 0.15356098563742415 1.8744729021250744E-4 80-81 1.6141294434965917E-4 0.0016505775277045793 0.0 0.15427953358323876 2.0046446314393154E-4 82-83 1.6141294434965917E-4 0.0016661981352222883 0.0 0.1547898067621506 2.1348163607535567E-4 84-85 1.7182668269479848E-4 0.001697439350257706 0.0 0.1549746506177768 2.1348163607535567E-4 86-87 1.7182668269479848E-4 0.001744301172810833 0.0 0.1551100292162636 2.1348163607535567E-4 88 1.8744729021250744E-4 0.0017859561261913902 0.0 0.15511783952002248 2.1348163607535567E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22555 0.0 49.293068 1 GTATCAA 40545 0.0 35.763126 1 ATCAACG 49130 0.0 28.762257 3 TCAACGC 49270 0.0 28.689056 4 CAACGCA 50120 0.0 28.185745 5 AACGCAG 51640 0.0 27.46186 6 TATCAAC 52085 0.0 27.346756 2 ACGCAGA 59265 0.0 23.836493 7 CGCAGAG 59910 0.0 23.558828 8 GTACATG 53370 0.0 19.41327 1 GCAGAGT 71980 0.0 19.386845 9 TACATGG 52880 0.0 19.13177 2 ACATGGG 53390 0.0 18.520823 3 GAGTACT 41860 0.0 18.469776 12-13 AGAGTAC 64405 0.0 18.36697 10-11 CAGAGTA 70250 0.0 17.589237 10-11 CATGGGG 37430 0.0 16.912476 4 GTACTTT 48730 0.0 15.923 14-15 AGTACTT 47355 0.0 15.718928 12-13 GTGGTAT 10325 0.0 15.441185 1 >>END_MODULE