##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139253_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9233943 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64831838359843 33.0 33.0 33.0 33.0 33.0 2 32.64945722536949 33.0 33.0 33.0 33.0 33.0 3 32.64347787288702 33.0 33.0 33.0 33.0 33.0 4 36.57203970178287 37.0 37.0 37.0 37.0 37.0 5 36.60362025193355 37.0 37.0 37.0 37.0 37.0 6 36.609931098773295 37.0 37.0 37.0 37.0 37.0 7 36.58621858506166 37.0 37.0 37.0 37.0 37.0 8 36.57933376890024 37.0 37.0 37.0 37.0 37.0 9 36.60561636561976 37.0 37.0 37.0 37.0 37.0 10-11 36.56012014585752 37.0 37.0 37.0 37.0 37.0 12-13 36.54895416833307 37.0 37.0 37.0 37.0 37.0 14-15 38.63852484252935 40.0 37.0 40.0 37.0 40.0 16-17 38.57927041568266 40.0 37.0 40.0 37.0 40.0 18-19 38.64065594730225 40.0 37.0 40.0 37.0 40.0 20-21 38.656024479665824 40.0 37.0 40.0 37.0 40.0 22-23 38.648556669320534 40.0 37.0 40.0 37.0 40.0 24-25 38.64599357055561 40.0 37.0 40.0 37.0 40.0 26-27 38.53198341969661 40.0 37.0 40.0 37.0 40.0 28-29 38.4800051122112 40.0 37.0 40.0 37.0 40.0 30-31 38.30471567988397 40.0 37.0 40.0 37.0 40.0 32-33 38.30646895692265 40.0 37.0 40.0 37.0 40.0 34-35 38.282962479072296 40.0 37.0 40.0 37.0 40.0 36-37 38.23817323587993 40.0 37.0 40.0 37.0 40.0 38-39 38.190871687901435 40.0 37.0 40.0 37.0 40.0 40-41 38.16570651108679 40.0 37.0 40.0 37.0 40.0 42-43 38.118390067339284 40.0 37.0 40.0 37.0 40.0 44-45 38.046418133825554 40.0 37.0 40.0 33.0 40.0 46-47 37.897217998725324 40.0 37.0 40.0 33.0 40.0 48-49 37.915655711323474 40.0 37.0 40.0 33.0 40.0 50-51 37.89805472449001 40.0 37.0 40.0 33.0 40.0 52-53 37.85986541029973 40.0 37.0 40.0 33.0 40.0 54-55 37.72244366113303 40.0 37.0 40.0 33.0 40.0 56-57 37.62567227168133 40.0 37.0 40.0 33.0 40.0 58-59 37.52398727285225 40.0 37.0 40.0 33.0 40.0 60-61 37.37656509904067 40.0 37.0 40.0 33.0 40.0 62-63 37.22615129049552 37.0 37.0 40.0 33.0 40.0 64-65 37.0659525981596 37.0 37.0 40.0 33.0 40.0 66-67 36.871560855200414 37.0 37.0 40.0 33.0 40.0 68-69 36.6579765751724 37.0 37.0 40.0 33.0 40.0 70-71 36.41894316261114 37.0 37.0 40.0 33.0 40.0 72-73 36.187503329672936 37.0 37.0 37.0 33.0 40.0 74-75 35.97452956607692 37.0 37.0 37.0 33.0 40.0 76-77 34.30818712528156 35.0 33.0 37.0 30.0 37.0 78-79 35.42610660450944 37.0 33.0 37.0 33.0 37.0 80-81 35.451615486447494 37.0 33.0 37.0 33.0 37.0 82-83 35.29250547580301 37.0 33.0 37.0 33.0 37.0 84-85 35.158013743995 37.0 33.0 37.0 33.0 37.0 86-87 35.0644151705128 37.0 33.0 37.0 33.0 37.0 88-89 34.924422554127545 37.0 33.0 37.0 33.0 37.0 90-91 34.785521548868346 37.0 33.0 37.0 33.0 37.0 92-93 34.79396881395928 37.0 33.0 37.0 33.0 37.0 94-95 34.832231871285536 37.0 33.0 37.0 33.0 37.0 96-97 34.8298919308063 37.0 33.0 37.0 33.0 37.0 98-99 34.840411082747615 37.0 33.0 37.0 33.0 37.0 100 34.8266545073866 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 5.0 19 7.0 20 58.0 21 305.0 22 1071.0 23 3069.0 24 7242.0 25 14230.0 26 24746.0 27 40270.0 28 59659.0 29 84873.0 30 115927.0 31 155717.0 32 207632.0 33 279600.0 34 387147.0 35 559001.0 36 989550.0 37 2600502.0 38 3601534.0 39 101793.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.234796121223624 20.28600349818057 14.57880994067215 22.900390439923658 2 14.546743465927827 21.36866125337789 42.5613846652508 21.523210615443478 3 18.00091250292535 27.438516785299626 30.66845875050344 23.892111961271585 4 11.822435984281038 18.73362224566472 39.71451848901385 29.729423281040397 5 12.614621944276674 38.379270913844714 35.54893072222776 13.457176419650846 6 28.200035781089046 38.66001554268129 19.50871828327013 13.631230392959528 7 25.724882642225538 33.59928689185108 23.236953054616 17.43887741130739 8 24.113534164116025 36.56053540724694 21.460821233139516 17.865109195497524 9 26.1906886571304 16.58081673027619 21.298541836195202 35.9299527763982 10-11 23.79300634924933 27.36092165649072 28.79619857311113 20.049873421148824 12-13 25.167375726538417 25.212800537322067 28.872743981835274 20.74707975430424 14-15 22.278288370096213 26.216717147679887 27.380429366861254 24.124565115362646 16-17 20.823893974654165 29.338257773521022 28.06714856264545 21.770699689179366 18-19 20.692904428801434 27.902305656424346 30.66064518700191 20.74414472777231 20-21 22.13997035640542 26.874525244382045 30.66647295590564 20.319031443306894 22-23 21.59327480656713 27.129594675437254 30.373437795052922 20.903692722942697 24-25 21.074779113816444 27.332251914919247 30.70174825699411 20.8912207142702 26-27 21.002148398166614 27.566966843540776 30.544648978027695 20.886235780264915 28-29 20.850571712161823 27.482001332961577 30.691261339821512 20.976165615055095 30-31 21.241746113273653 27.35000342614934 30.561246664794172 20.847003795782836 32-33 20.878720274527808 27.542706254671344 30.49881257615515 21.079760894645705 34-35 21.174454226452035 27.631369028428608 30.413655440752187 20.780521304367173 36-37 21.087491227644563 27.582350862308058 30.30562219740865 21.024535712638727 38-39 20.898964363739893 27.78482876037584 30.285159283753238 21.031047592131028 40-41 21.2735256188185 27.555198627362724 30.242082770384627 20.929192983434145 42-43 21.109641363466082 27.66293826760546 29.88023201243413 21.347188356494332 44-45 21.23519106148 27.953472418103033 29.49933564374067 21.3120008766763 46-47 21.440465544408692 27.919424450028675 28.969699893220856 21.67041011234178 48-49 21.37071614498621 28.19128849055572 28.767312934888533 21.67068242956953 50-51 21.43918005714761 28.33334377298459 28.433001258562214 21.794474911305585 52-53 21.404135905386656 28.293705325031098 28.450010948429238 21.85214782115301 54-55 21.624812790610175 28.15050704457505 28.47239680842739 21.75228335638738 56-57 21.563108258582446 28.090088972508802 28.347220791266864 21.999581977641885 58-59 21.305686200504443 27.978652607614375 28.605475621118657 22.110185570762518 60-61 21.594775588345456 28.28563466655548 28.50925738733401 21.610332357765053 62-63 21.134214185796925 28.40215932496727 28.64789566700024 21.815730822235565 64-65 21.070115592024965 28.494839095056385 28.436541148288004 21.99850416463065 66-67 21.13425065792246 28.88210762155764 28.03822270914656 21.945419011373342 68-69 21.261380920005887 28.897132023868423 27.85637497078562 21.985112085340074 70-71 21.249474428362298 28.42214548408595 27.915784816634982 22.412595270916775 72-73 21.37508563274802 28.140982713809954 27.916888671792115 22.56704298164991 74-75 21.504101566215315 28.195263620073092 27.876010472020468 22.424624341691132 76-77 21.66436813582883 28.021663200721086 27.64551714935396 22.668451514096123 78-79 21.856665136030603 27.9678780711754 27.301439594598477 22.874017198195517 80-81 21.721509112192543 28.353434524654936 27.307127009755938 22.617929353396583 82-83 21.839594320781288 28.13693151298584 27.398130414223765 22.62534375200911 84-85 21.860496779557373 28.306610590523356 27.323360508933654 22.509532120985618 86-87 22.054506920790665 28.296368005369786 27.521664846147043 22.127460227692506 88-89 22.145670921907232 28.25839595153089 27.618060842533204 21.97787228402867 90-91 22.097286753546584 28.0139771716076 27.58310093446471 22.305635140381106 92-93 22.03189642931488 27.626847482488465 27.853067155238847 22.488188932957804 94-95 21.550330943101244 27.899195851684368 28.263605187857717 22.286868017356678 96-97 21.66526553796103 27.95509598248721 28.267916064081472 22.111722415470286 98-99 22.752552799585114 29.68147573380142 28.781882947729976 18.78408851888349 100 21.748514227007906 30.845362567623802 22.40412375156055 25.001999453807738 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2319.0 1 2175.5 2 3335.0 3 5024.5 4 7346.0 5 12564.0 6 16599.0 7 18789.0 8 19838.0 9 19243.0 10 17965.5 11 16861.0 12 19086.5 13 26766.0 14 44341.5 15 68294.5 16 88139.5 17 99775.0 18 101153.0 19 92088.5 20 76899.5 21 60398.0 22 47107.0 23 40819.0 24 41689.5 25 48648.0 26 60233.5 27 74766.5 28 91142.5 29 111238.5 30 134301.5 31 158107.5 32 187134.0 33 218415.0 34 247870.0 35 276002.0 36 305031.5 37 329994.5 38 346639.0 39 359627.5 40 369403.5 41 374532.5 42 375322.5 43 380472.0 44 386436.0 45 388384.0 46 385124.5 47 378095.0 48 377697.5 49 371683.5 50 356501.5 51 338460.0 52 314799.0 53 288205.0 54 260269.0 55 232383.5 56 205245.5 57 178994.0 58 153978.0 59 129498.5 60 105212.5 61 82803.5 62 63067.5 63 46658.5 64 34296.0 65 25379.5 66 18613.5 67 13785.5 68 10291.5 69 7351.5 70 5296.5 71 3890.5 72 2731.5 73 1948.0 74 1358.0 75 897.5 76 567.0 77 340.5 78 227.5 79 153.5 80 116.0 81 87.5 82 60.5 83 45.0 84 35.0 85 27.0 86 22.5 87 20.5 88 18.0 89 13.0 90 9.5 91 7.5 92 5.0 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.6244414764093735E-4 7 0.0 8 0.0 9 1.0829609842729158E-5 10-11 0.006151218390670161 12-13 2.707402460682289E-5 14-15 0.006535669540087046 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 148.0 20-21 567.0 22-23 1145.0 24-25 2730.0 26-27 3538.0 28-29 6626.0 30-31 14442.0 32-33 19098.0 34-35 26822.0 36-37 35685.0 38-39 33542.0 40-41 53388.0 42-43 71629.0 44-45 90747.0 46-47 85839.0 48-49 72055.0 50-51 40841.0 52-53 19436.0 54-55 17333.0 56-57 17941.0 58-59 41223.0 60-61 67941.0 62-63 66786.0 64-65 70719.0 66-67 79085.0 68-69 79008.0 70-71 78526.0 72-73 75075.0 74-75 77056.0 76-77 77326.0 78-79 84772.0 80-81 86635.0 82-83 84316.0 84-85 84302.0 86-87 89103.0 88-89 96901.0 90-91 102004.0 92-93 104916.0 94-95 118410.0 96-97 302610.0 98-99 601997.0 100-101 6151680.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.88595334783176 #Duplication Level Percentage of deduplicated Percentage of total 1 88.70741679559416 74.41306226921878 2 7.895458750710856 13.246361688437219 3 1.9337615663703658 4.866462976271237 4 0.7043277984086725 2.3633283535556386 5 0.29970872042515484 1.2570675869761445 6 0.15300005978652223 0.7700733526480604 7 0.09102640572052792 0.5345085776585107 8 0.05805260449129575 0.3895838457661571 9 0.03586832396480877 0.27079636956991776 >10 0.11822909388706061 1.4909666631214469 >50 0.0019038042769190364 0.10898470029276264 >100 0.0010617118715439793 0.16220965953875288 >500 1.433951716993385E-4 0.08076488908455658 >1k 4.096932044181176E-5 0.045829067860711066 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.0829609842729158E-5 0.0 0.0 0.0 5 0.0 2.1659219685458315E-5 0.0 0.0 1.0829609842729158E-5 6 0.0 2.1659219685458315E-5 0.0 0.0 3.248882952818747E-5 7 0.0 2.1659219685458315E-5 0.0 0.0 3.248882952818747E-5 8 0.0 3.248882952818747E-5 0.0 2.1659219685458315E-5 5.414804921364578E-5 9 2.1659219685458315E-5 4.331843937091663E-5 0.0 2.1659219685458315E-5 7.58072688991041E-5 10-11 2.1659219685458315E-5 4.331843937091663E-5 0.0 2.1659219685458315E-5 7.58072688991041E-5 12-13 2.1659219685458315E-5 4.873324429228121E-5 0.0 2.1659219685458315E-5 7.58072688991041E-5 14-15 2.1659219685458315E-5 9.746648858456241E-5 0.0 5.414804921364578E-5 1.1912570827002073E-4 16-17 2.1659219685458315E-5 9.746648858456241E-5 0.0 7.58072688991041E-5 1.2995531811274989E-4 18-19 2.1659219685458315E-5 1.0288129350592698E-4 0.0 1.1912570827002073E-4 1.4078492795547903E-4 20-21 2.1659219685458315E-5 1.0829609842729157E-4 0.0 1.732737574836665E-4 1.4619973287684362E-4 22-23 2.1659219685458315E-5 1.0829609842729157E-4 0.0 2.9239946575368724E-4 1.6244414764093735E-4 24-25 2.1659219685458315E-5 1.1912570827002073E-4 0.0 7.093394446987598E-4 1.6244414764093735E-4 26-27 2.1659219685458315E-5 1.2995531811274989E-4 0.0 0.0020846998947253626 1.6244414764093735E-4 28-29 2.1659219685458315E-5 1.2995531811274989E-4 0.0 0.00777024506215817 1.6244414764093735E-4 30-31 2.1659219685458315E-5 1.4078492795547903E-4 0.0 0.01144689760376472 1.6244414764093735E-4 32-33 2.1659219685458315E-5 1.516145377982082E-4 0.0 0.015123550145371267 1.9493297716912481E-4 34-35 2.1659219685458315E-5 1.6244414764093738E-4 0.0 0.019872334061408002 1.9493297716912481E-4 36-37 2.1659219685458315E-5 1.8410336732639567E-4 0.0 0.029640642139549703 1.9493297716912481E-4 38-39 2.1659219685458315E-5 2.274218066973123E-4 0.0 0.11008298405134187 2.1117739193321857E-4 40-41 2.1659219685458315E-5 2.4366622146140604E-4 0.0 0.19657366306029828 2.1659219685458313E-4 42-43 2.1659219685458315E-5 2.761550509895935E-4 0.0 0.21915881438730994 2.2200700177594772E-4 44-45 2.1659219685458315E-5 3.0864388051778097E-4 0.0 0.2495900180453789 2.274218066973123E-4 46-47 2.1659219685458315E-5 3.411327100459685E-4 0.0 0.2819326478406895 2.490810263827706E-4 48-49 2.1659219685458315E-5 3.519623198886976E-4 0.0 0.3134738865076382 2.5991063622549977E-4 50-51 2.1659219685458315E-5 3.952807592596142E-4 0.0 0.34358020187042526 2.5991063622549977E-4 52-53 2.1659219685458315E-5 4.006955641809788E-4 0.0 0.6521428603143857 2.869846608323227E-4 54-55 2.1659219685458315E-5 4.006955641809788E-4 0.0 1.0830476211516575 3.3030310020323926E-4 56-57 2.1659219685458315E-5 4.006955641809788E-4 0.0 1.5762876162436783 3.3571790512460387E-4 58-59 2.1659219685458315E-5 4.061103691023434E-4 0.0 2.115889171072423 3.411327100459685E-4 60-61 2.1659219685458315E-5 4.11525174023708E-4 0.0 2.270844643507113 3.4654751496733305E-4 62-63 2.1659219685458315E-5 4.11525174023708E-4 0.0 2.2770121063125472 3.5737712481006216E-4 64-65 2.1659219685458315E-5 4.2235478386643715E-4 0.0 2.282535207332339 3.5737712481006216E-4 66-67 2.1659219685458315E-5 4.548436133946246E-4 0.0 2.2868670512694305 3.627919297314267E-4 68-69 2.1659219685458315E-5 4.6025841831598917E-4 0.0 2.291577931551018 3.7362153957415595E-4 70-71 2.1659219685458315E-5 4.6567322323735373E-4 0.0 2.2960830492455933 4.006955641809788E-4 72-73 2.1659219685458315E-5 4.6567322323735373E-4 0.0 2.299597257639559 4.4401400355189544E-4 74-75 2.1659219685458315E-5 4.8191763800144746E-4 0.0 2.302450859833118 4.4401400355189544E-4 76-77 2.1659219685458315E-5 4.873324429228121E-4 0.0 2.305201580733171 4.4401400355189544E-4 78-79 2.1659219685458315E-5 4.873324429228121E-4 0.0 2.306923488698165 4.4401400355189544E-4 80-81 2.1659219685458315E-5 4.873324429228121E-4 0.0 2.307546191264122 4.7650283308008296E-4 82-83 2.1659219685458315E-5 4.873324429228121E-4 0.0 2.3079902052676737 5.360656872150933E-4 84-85 2.1659219685458315E-5 4.873324429228121E-4 0.0 2.3082067974645284 5.414804921364579E-4 86-87 2.1659219685458315E-5 4.981620527655412E-4 0.0 2.3082988491481915 5.414804921364579E-4 88 2.1659219685458315E-5 5.306508822937287E-4 0.0 2.3082988491481915 5.414804921364579E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19695 0.0 59.110397 1 GTATCAA 37135 0.0 39.350197 1 TGGTATC 7365 0.0 31.836628 2 GTGGTAT 7900 0.0 31.15643 1 ATCAACG 46800 0.0 30.826952 3 TCAACGC 46945 0.0 30.696936 4 TATCAAC 47485 0.0 30.50957 2 CAACGCA 47885 0.0 30.076635 5 AACGCAG 49170 0.0 29.40479 6 ATCTCGT 9120 0.0 26.89891 94 ACGCAGA 55705 0.0 25.93207 7 CGCAGAG 56375 0.0 25.64727 8 GCAGAGT 62965 0.0 22.890772 9 GTACATG 47150 0.0 22.60286 1 TACATGG 47025 0.0 22.231356 2 GAGTACT 37250 0.0 21.75669 12-13 ACATGGG 47180 0.0 21.508488 3 TATCTCG 9980 0.0 21.273237 94 CAGAGTA 62555 0.0 20.654575 10-11 GTACTTT 40120 0.0 20.190151 14-15 >>END_MODULE